From 3262ddd3747ea848f0ab289b2f7c26572f44fc59 Mon Sep 17 00:00:00 2001 From: Joselyn Chavez Date: Tue, 2 Jan 2024 13:43:35 -0600 Subject: [PATCH 1/3] update index description and fix installation --- INDEX.md | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/INDEX.md b/INDEX.md index 8a8ea7deb..9b09d6b46 100644 --- a/INDEX.md +++ b/INDEX.md @@ -21,16 +21,17 @@ Giotto Suite is a major upgrade to the Giotto package that provides tools to pro ## Installation To install Giotto suite use -`devtools::install_github("drieslab/Giotto@suite_modular")`. +`devtools::install_github("drieslab/Giotto")`. Visit the Giotto [Discussions](https://github.com/drieslab/Giotto/discussions) page for more information. ## Website description -- **Examples:** Here you can find end-to-end examples for different technologies and datasets -- **Tutorials:** Here you can find various tutorials on working with Giotto (analysis, visualizations, working on the cloud, …) - **Get started:** Here you can find more advanced information about the Giotto object, Giotto ecosystem, Giotto configuration, and installation FAQs. -- **NEWS:** Here you can find the changelog for every Giotto release and video recordings from previous presentations. +- **Documentation:** Here you will find all Giotto functions grouped by their purpose (Helpers, Getters & Setters, Visualization, ...) +- **Examples:** Here you can find end-to-end examples for different technologies and datasets. +- **Tutorials:** Here you can find various tutorials on working with Giotto (analysis, visualizations, working on the cloud, ...) +- **News:** Here you can find the changelog for every Giotto release and video recordings from previous presentations. ## References From 8d0e266d4274ff0d01effde20ed0d00616a471ef Mon Sep 17 00:00:00 2001 From: Joselyn Chavez Date: Tue, 2 Jan 2024 18:14:47 -0600 Subject: [PATCH 2/3] update link --- vignettes/branches.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/vignettes/branches.Rmd b/vignettes/branches.Rmd index d1db18862..5f8ddae89 100644 --- a/vignettes/branches.Rmd +++ b/vignettes/branches.Rmd @@ -13,7 +13,7 @@ The Suite branch of Giotto is the latest and extended version of Giotto and is u Using established packages optimized for large(r) data, Giotto Suite adopts fast and memory efficient methods to create an interactive analysis. Click the logo below to learn more about the Giotto Suite branch. -[![](images/branches/GiottoLogo.png){width="200px"}](https://giottosuite.com) +[![](images/branches/GiottoLogo.png){width="200px"}](https://drieslab.github.io/Giotto/articles/ecosystem.html) # Giotto Master From 245ae7d7665c586a22c80d4a2626f16ed3f3e889 Mon Sep 17 00:00:00 2001 From: Joselyn Chavez Date: Tue, 2 Jan 2024 18:14:59 -0600 Subject: [PATCH 3/3] move branches to News section --- _pkgdown.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/_pkgdown.yml b/_pkgdown.yml index f1254e538..4a805b754 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -47,8 +47,6 @@ navbar: href: articles/errorsfaqsandtips.html - text: FAQs href: articles/faqs.html - - text: Branches - href: articles/branches.html - text: How to report a bug href: articles/github_issues.html reference: @@ -175,6 +173,8 @@ navbar: href: news/index.html - text: Presentations href: articles/presentations.html + - text: Branches + href: articles/branches.html github: icon: fab fa-github fa-lg href: https://github.com/drieslab/Giotto/