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chore: catch up to suite #1081

Merged
merged 69 commits into from
Dec 9, 2024
Merged

chore: catch up to suite #1081

merged 69 commits into from
Dec 9, 2024

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jiajic
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@jiajic jiajic commented Dec 9, 2024

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jiajic added 30 commits October 16, 2024 09:46
chore: bump version for dev and drop remotes
This reverts commit f41142b.
- make transcript loading optional in create_gobject
- change featmeta loading to after possible expr matrix loading
- silence verbosity when loading TX cols
- autoload focus images
- auto load pre-agg data + metadata
- skip tx by default
enh: xenium convenience function updates
josschavezf and others added 29 commits November 15, 2024 22:14
add biocthis and run devtools::document
Merge branch 'suite_dev' into suite
fix: xenium focus image loading when not in a subdirectory
New internals
- .varexp() - variance explained per PC
- .cumvar() - cumulative variance per PC
- docs
- add cell_id subsets
- plotting of labels in joined umap
@jiajic jiajic merged commit 0dbbf5c into R4.4.0 Dec 9, 2024
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3 participants