Code

chore: catch up to suite#1081

Code

Merged

jiajic merged 69 commits intoR4.4.0drieslab/Giotto:R4.4.0from suitedrieslab/Giotto:suiteCopy head branch name to clipboardDec 9, 2024

+6,250-5,054

Commits

Commits on Oct 16, 2024

• temp

  jiajic

  committed
  f41142b

Commits on Oct 30, 2024

• chore: bump version for dev and drop remotes

  jiajic

  committed
  3436f49

• Merge pull request #1062 from jiajic/suite_dev

  Show description for 7291349
  jiajic

  authored
  7291349

Commits on Nov 1, 2024

• Merge branch 'suite' into suite_dev

  jiajic

  committed
  1821c80

Commits on Nov 6, 2024

• Update convenience_xenium.R

  jiajic

  committed
  578f39e

• Revert "temp"

  Show description for ae212be
  jiajic

  committed
  ae212be

• Merge branch 'suite_dev' into xen_update

  jiajic

  committed
  16a30bf

• Update convenience_xenium.R

  jiajic

  committed
  f61dcfd

• temporarily lower R ver

  jiajic

  committed
  8b0950f

• Update convenience_xenium.R

  jiajic

  committed
  ad9314f

• Update convenience_xenium.R

  jiajic

  committed
  f981835

• Update convenience_xenium.R

  jiajic

  committed
  eff1c71

• Update convenience_xenium.R

  jiajic

  committed
  8bf5431

Commits on Nov 7, 2024

• fix tif path checking

  jiajic

  committed
  0157ba8

• Update convenience_xenium.R

  jiajic

  committed
  2eb20b5

• fix: allow overwrite passing though ...

  jiajic

  committed
  57788f0

• fix: change when image input type is checked

  jiajic

  committed
  8555ccf

• fix: missing comma

  jiajic

  committed
  52abd97

• fix: warning that the "focus" dir does not exist

  jiajic

  committed
  5359eb2

• fix: focus img dir assignment

  jiajic

  committed
  4d35750

• Update convenience_xenium.R

  Show description for a23ca0e
  jiajic

  committed
  a23ca0e

• fix: ignore subdirectories within image focus dir

  jiajic

  committed
  0559c44

• add centroid creation step

  jiajic

  committed
  4a9da54

• Update convenience_xenium.R

  jiajic

  committed
  84c9cd2

• enh: update conv. fun

  Show description for 1e33aa1
  jiajic

  committed
  1e33aa1

• revert default changes

  jiajic

  committed
  4e4e2dd

• update prints and run docs

  jiajic

  committed
  7f70a92

• Revert "temporarily lower R ver"

  Show description for 34d10ad
  jiajic

  committed
  34d10ad

• Merge pull request #1064 from jiajic/xen_update

  Show description for ae5eab2
  jiajic

  authored
  ae5eab2

• chore: update news

  jiajic

  committed
  fbdb139

Commits on Nov 8, 2024

• chore: update news

  jiajic

  committed
  4613aa8

• chore: add back remotes

  jiajic

  committed
  89a031a

• Merge pull request #1065 from jiajic/suite_dev

  Show description for 084d645
  jiajic

  authored
  084d645

• Merge pull request #1066 from drieslab/suite_dev

  Show description for ec38ab8
  jiajic

  authored
  ec38ab8

Commits on Nov 15, 2024

• fix: account for when no morphology focus imgs found

  jiajic

  committed
  e5a266b

• fix: focus path detection when no focus directory but image is present

  jiajic

  committed
  92fdce2

• Update convenience_xenium.R

  jiajic

  committed
  ede47ac

• fix: list naming indexing

  jiajic

  committed
  12412c3

Commits on Nov 16, 2024

• add biocstyle

  josschavezf

  committed
  a778a4d

• run devtools::document

  josschavezf

  committed
  dad552b

• Merge pull request #1070 from josschavezf/suite_dev

  Show description for 9fcd742
  josschavezf

  authored
  9fcd742

• add website changes

  josschavezf

  committed
  38e202a

• Merge branch 'suite_dev' of https://github.com/josschavezf/Giotto into suite_dev

  josschavezf

  committed
  049ec15

• Merge pull request #1071 from josschavezf/suite_dev

  Show description for a816e98
  josschavezf

  authored
  a816e98

• Merge branch 'suite_dev' into suite

  josschavezf

  committed
  ea1fa21

• Merge pull request #1072 from josschavezf/suite

  Show description for 3b309ac
  josschavezf

  authored
  3b309ac

• chore: merge conflict

  jiajic

  committed
  4c4f2ca

• Merge pull request #1074 from jiajic/suite_dev

  Show description for 1321982
  jiajic

  authored
  1321982

Commits on Nov 19, 2024

• segmentations

  JunxiangXu

  committed
  a13453e

• Merge pull request #1076 from JunxiangXu/suite_dev

  Show description for 2fb7f3f
  jiajic

  authored
  2fb7f3f

Commits on Nov 20, 2024

• change scrublet seed setting

  jiajic

  committed
  9138988

• allow access to transcript datatable

  jiajic

  committed
  e3464a2

Commits on Nov 21, 2024

• refactor: var explained

  Show description for ebff423
  jiajic

  committed
  ebff423

Commits on Nov 22, 2024

• enh: labelTransfer with integration

  jiajic

  committed
  4d29198

• chore: docs

  jiajic

  committed
  5035de8

Commits on Nov 25, 2024

• chore: fix typo

  jiajic

  committed
  be6ad66

• fix param passing

  jiajic

  committed
  4b22026

Commits on Nov 26, 2024

• Update clustering.R

  jiajic

  committed
  bfc8d26

Commits on Dec 4, 2024

• fix: prevent drop during matrix indexing

  jiajic

  committed
  74826a7

Commits on Dec 8, 2024

• enh: labelTransfer() harmony integration

  jiajic

  committed
  11d2880

Commits on Dec 9, 2024

• enh: labelTransfer() harmony integration

  Show description for 771acc2
  jiajic

  committed
  771acc2

• chore: reexport dotplot

  jiajic

  committed
  faf11e1

• chore: update news

  jiajic

  committed
  fbee521

• chore: docs

  jiajic

  committed
  74dd669

• chore: merge conflict

  jiajic

  committed
  eca4404

• chore: docs

  jiajic

  committed
  d4f3e6f

• Update NEWS.md

  jiajic

  committed
  402b4c9

• Merge pull request #1079 from jiajic/suite_dev

  Show description for 8ad8609
  jiajic

  authored
  8ad8609

• Merge pull request #1080 from drieslab/suite_dev

  Show description for f3a78f6
  jiajic

  authored
  f3a78f6