setup.py

from setuptools import setup, find_packages 
import io

setup(	name='mantis-ml',
	version='1.6.3',
	author='Dimitrios Vitsios',
	author_email='dvitsios@gmail.com',
	description='Disease-agnostic gene prioritisation from high-throughput genomic screens by stochastic semi-supervised learning',
	url="https://github.com/astrazeneca-cgr-publications/mantis-ml-release",
	packages=find_packages(),
	python_requires='>=3.8',
	install_requires=[
		'absl-py==1.0.0',
		'asttokens==2.0.5',
		'astunparse==1.6.3',
		'backcall==0.2.0',
		'bokeh==2.4.2',
		'cachetools==5.0.0',
		'certifi==2021.10.8',
		'chardet==5.0.0',
		'charset-normalizer==2.0.12',
		'cycler==0.11.0',
		'decorator==5.1.1',
		'entrypoints==0.3',
		'executing==0.9.1',
		'flatbuffers==2.0',
		'fonttools==4.29.1',
		'gast==0.5.3',
		'gensim==4.1.2',
		'google-auth==2.6.0',
		'google-auth-oauthlib==0.4.6',
		'google-pasta==0.2.0',
		'grpcio==1.44.0',
		'h5py==3.6.0',
		'idna==3.3',
		'importlib-metadata==4.11.2',
		'ipython==8.4.0',
		'jedi==0.18.1',
		'Jinja2==3.0.3',
		'joblib==1.1.0',
		'keras==2.8.0',
		'Keras-Preprocessing==1.1.2',
		'kiwisolver==1.3.2',
		'libclang==13.0.0',
		'Markdown==3.3.6',
		'MarkupSafe==2.1.0',
		'matplotlib==3.5.1',
		'matplotlib-inline==0.1.3',
		'networkx==2.8.5',
		'numpy==1.22.2',
		'oauthlib==3.2.0',
		'opt-einsum==3.3.0',
		'packaging==21.3',
		'palettable==3.3.0',
		'pandas==1.4.1',
		'parso==0.8.3',
		'pexpect==4.8.0',
		'pickleshare==0.7.5',
		'Pillow==9.0.1',
		'plotly==5.6.0',
		'prompt-toolkit==3.0.30',
		'protobuf==3.19.4',
		'ptyprocess==0.7.0',
		'pure-eval==0.2.2',
		'pyasn1==0.4.8',
		'pyasn1-modules==0.2.8',
		'Pygments==2.12.0',
		'pyparsing==3.0.7',
		'python-dateutil==2.8.2',
		'pytz==2021.3',
		'PyYAML==6.0',
		'requests==2.27.1',
		'requests-oauthlib==1.3.1',
		'rsa==4.8',
		'scikit-learn==1.0.2',
		'scikit-network==0.24.0',
		'scipy==1.8.0',
		'seaborn==0.11.2',
		'six==1.16.0',
		'smart-open==5.2.1',
		'stack-data==0.3.0',
		'stellargraph==1.2.1',
		'tenacity==8.0.1',
		'tensorboard==2.8.0',
		'tensorboard-data-server==0.6.1',
		'tensorboard-plugin-wit==1.8.1',
		'tensorflow==2.8.0',
		'tensorflow-io-gcs-filesystem==0.24.0',
		'termcolor==1.1.0',
		'tf-estimator-nightly==2.8.0.dev2021122109',
		'threadpoolctl==3.1.0',
		'tornado==6.2',
		'traitlets==5.3.0',
		'typing_extensions==4.1.1',
		'umap==0.1.1',
		'urllib3==1.26.8',
		'wcwidth==0.2.5',
		'Werkzeug==2.0.3',
		'wrapt==1.13.3',
		'xgboost==1.5.2',
		'zipp==3.7.0',
		'download==0.3.5'
	],
	include_package_data=True,
	entry_points={'console_scripts': ['mantisml2=mantis_ml.modules.main.__main__:main']}
					 # 'mantisml-profiler=mantis_ml.modules.profiler.__main__:main',
					 # 'mantisml-overlap=mantis_ml.modules.hypergeom_enrichment.__main__:main']}
)