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Get the correct pseudotime for a converging trajectory #59

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SirKuikka opened this issue Jul 25, 2022 · 0 comments
Open

Get the correct pseudotime for a converging trajectory #59

SirKuikka opened this issue Jul 25, 2022 · 0 comments

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@SirKuikka
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Hi,

So I have this converging trajectory and when I visualize it, I can't figure out how to make the pseudotime fit the milestone network.

dynplot::plot_dimred(converging_traj,dimred = dyndimred::dimred_mds(converging_traj$expression),color_cells = "pseudotime")

The trajectory is one of the trajectories from your dynverse benchmark data ("converging_1").

If the pseudotime would be correct, it would start from zero in both of the start milestones.
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@SirKuikka