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ggtranscript 1.0.0

Fixes

  • Updates geoms to work with the latest version of ggplot2 and ggrepel (R version 4.4).
  • Fixes all unit tests.
  • Fixes CI workflow issues and simplifies testing to linux-only.

ggtranscript 0.99.9

NEW FEATURES

  • Address ggtranscript reviews; update docs with examples of using gtf/bed files, integration with ggplot2 extensions and add usage of shorten_gaps() to README.

ggtranscript 0.99.8

NEW FEATURES

  • Address CRAN feedback; changing ggplot2 -> 'ggplot2', remove biocViews and contributing, removing Date field in DESCRIPTION.

ggtranscript 0.99.7

NEW FEATURES

  • Add cran-comments.md in preparation for first CRAN submission.
  • Update CI to run R CMD Check on latest R version (4.2).

ggtranscript 0.99.6

NEW FEATURES

  • Add @return documentation for geom_* functions for BiocCheck.

ggtranscript 0.99.5

NEW FEATURES

  • Change branch to naming from main to master to match BBS.

ggtranscript 0.99.4

NEW FEATURES

  • Change email to UCL email for Bioconductor submission.

NEW FEATURES

  • Add add_utr() for adding UTRs as ranges. This helper function is designed to work with shorten_gaps(), enabling shortening of gaps whilst visually differentiating UTRs from the CDS.
  • Allow to_intron() to take CDS and UTRs ranges as input.
  • Submit to Bioconductor.

ggtranscript 0.99.2

NEW FEATURES

  • Add geom_junction_label_repel() for labeling junctions (e.g. with counts).
  • Add add_exon_number() for visualizing the exon number/order.

ggtranscript 0.99.1

NEW FEATURES

  • Implement base geoms: geom_range(), geom_half_range(), geom_intron(), geom_junction() and helper functions: to_intron(), to_diff() and shorten_gaps().