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Issue when trying to plot Myeloid data for Coverage that is not 250x #152

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Yu-jinKim opened this issue Oct 29, 2024 · 1 comment
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@Yu-jinKim
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@Yu-jinKim
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Myeloid doesn't appear to have 200x or 300x. That might be a recent change?

dx cat file-GvXPf4j4j9k0y1K6pKj9yfjj | jq '.report_saved_raw_data.multiqc_general_stats."133070932-24289K0035-24NGSHO48-8128-M-96527893" | keys'
[
  "Picard_mqc-generalstats-picard-FOLD_ENRICHMENT",
  "Picard_mqc-generalstats-picard-PCT_PF_READS_ALIGNED",
  "Picard_mqc-generalstats-picard-PCT_TARGET_BASES_100X",
  "Picard_mqc-generalstats-picard-summed_mean",
  "Picard_mqc-generalstats-picard-summed_median",
  "Samtools_mqc-generalstats-samtools-flagstat_total",
  "Samtools_mqc-generalstats-samtools-mapped_passed",
  "VerifyBAMID_mqc-generalstats-verifybamid-FREEMIX",
  "bcl2fastq_mqc-generalstats-bcl2fastq-R1_trimmed_bases",
  "bcl2fastq_mqc-generalstats-bcl2fastq-R2_trimmed_bases",
  "bcl2fastq_mqc-generalstats-bcl2fastq-percent_R1_Q30",
  "bcl2fastq_mqc-generalstats-bcl2fastq-percent_R2_Q30",
  "bcl2fastq_mqc-generalstats-bcl2fastq-perfectPercent",
  "bcl2fastq_mqc-generalstats-bcl2fastq-total",
  "bcl2fastq_mqc-generalstats-bcl2fastq-yieldQ30",
  "custom_coverage_mqc-generalstats-custom_coverage-1000x",
  "custom_coverage_mqc-generalstats-custom_coverage-250x",
  "custom_coverage_mqc-generalstats-custom_coverage-500x",
  "custom_coverage_mqc-generalstats-custom_coverage-Usable_unique_bases_on_target"
]

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