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Merge pull request #21657 from boegel/20241015191315_new_pr_anndata01…
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…05post1

demote hatchling to build-only dependency in easyconfigs for anndata 0.10.5.post1, Cassiopeia 2.0.0, phonemizer 3.2.1, scanpy 1.9.8, wandb 0.16.1
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bartoldeman authored Oct 15, 2024
2 parents c587a61 + cbaa2fc commit 7f1f0e6
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Showing 6 changed files with 53 additions and 11 deletions.
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Expand Up @@ -9,11 +9,14 @@ description = """anndata is a Python package for handling annotated data matrice

toolchain = {'name': 'foss', 'version': '2023a'}

builddependencies = [
('hatchling', '1.18.0'),
]

dependencies = [
('Python', '3.11.3'),
('SciPy-bundle', '2023.07'),
('h5py', '3.9.0'),
('hatchling', '1.18.0'),
]

use_pip = True
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Expand Up @@ -11,6 +11,8 @@ toolchain = {'name': 'foss', 'version': '2023a'}
builddependencies = [
('CMake', '3.26.3'),
('poetry', '1.5.1'),
('hatchling', '1.18.0'),
('hatch-jupyter-builder', '0.9.1'),
]

dependencies = [
Expand All @@ -27,7 +29,6 @@ dependencies = [
('PyYAML', '6.0'),
('typing-extensions', '4.9.0'),
('tqdm', '4.66.1'),
('hatchling', '1.18.0'),
('BeautifulSoup', '4.12.2'),
('statsmodels', '0.14.1'),
('Seaborn', '0.13.2'),
Expand All @@ -39,12 +40,6 @@ use_pip = True
sanity_pip_check = True

exts_list = [
('hatch_jupyter_builder', '0.9.1', {
'checksums': ['79278198d124c646b799c5e8dca8504aed9dcaaa88d071a09eb0b5c2009a58ad'],
}),
('hatch_nodejs_version', '0.3.2', {
'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'],
}),
('deprecation', '2.1.0', {
'checksums': ['72b3bde64e5d778694b0cf68178aed03d15e15477116add3fb773e581f9518ff'],
}),
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@@ -0,0 +1,35 @@
easyblock = 'PythonBundle'

name = 'hatch-jupyter-builder'
version = "0.9.1"

homepage = 'https://hatch-jupyter-builder.readthedocs.io'
description = """Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is
primarily targeted for package authors who are providing JavaScript as part of
their Python packages.
Typical use cases are Jupyter Lab Extensions and Jupyter Widgets."""


toolchain = {'name': 'GCCcore', 'version': '12.3.0'}

builddependencies = [
('binutils', '2.40'),
]
dependencies = [
('Python', '3.11.3'),
('hatchling', '1.18.0'),
]

sanity_pip_check = True
use_pip = True

exts_list = [
('hatch_nodejs_version', '0.3.2', {
'checksums': ['8a7828d817b71e50bbbbb01c9bfc0b329657b7900c56846489b9c958de15b54c'],
}),
('hatch_jupyter_builder', '0.9.1', {
'checksums': ['79278198d124c646b799c5e8dca8504aed9dcaaa88d071a09eb0b5c2009a58ad'],
}),
]

moduleclass = 'tools'
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Expand Up @@ -13,12 +13,15 @@ It is using four backends: espeak, espeak-mbrola, festival and segments.

toolchain = {'name': 'gfbf', 'version': '2023a'}

builddependencies = [
('hatchling', '1.18.0'),
]

dependencies = [
('Python', '3.11.3'),
('Python-bundle-PyPI', '2023.06'),
('eSpeak-NG', '1.51'),
('festival', '2.5.0'),
('hatchling', '1.18.0'),
('RDFlib', '7.0.0'),
('lxml', '4.9.2'),
]
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5 changes: 4 additions & 1 deletion easybuild/easyconfigs/s/scanpy/scanpy-1.9.8-foss-2023a.eb
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Expand Up @@ -13,6 +13,10 @@ description = """Scanpy is a scalable toolkit for analyzing single-cell gene exp
toolchain = {'name': 'foss', 'version': '2023a'}
toolchainopts = {'openmp': True}

builddependencies = [
('hatchling', '1.18.0'),
]

dependencies = [
('Python', '3.11.3'),
('SciPy-bundle', '2023.07'),
Expand All @@ -25,7 +29,6 @@ dependencies = [
('networkx', '3.1'),
('numba', '0.58.1'),
('umap-learn', '0.5.5'),
('hatchling', '1.18.0'),
('anndata', '0.10.5.post1'),
]

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5 changes: 4 additions & 1 deletion easybuild/easyconfigs/w/wandb/wandb-0.16.1-GCC-12.3.0.eb
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Expand Up @@ -9,13 +9,16 @@ tracking your machine learning experiments."""

toolchain = {'name': 'GCC', 'version': '12.3.0'}

builddependencies = [
('hatchling', '1.18.0'),
]

dependencies = [
('Python', '3.11.3'),
('Python-bundle-PyPI', '2023.06'),
('GitPython', '3.1.40'),
('PyYAML', '6.0'),
('protobuf-python', '4.24.0'),
('hatchling', '1.18.0'),
]

use_pip = True
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