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{vis}[foss/2020b] PyMOL v2.5.0 w/ Python 3.8.6 #16394

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merged 7 commits into from
Oct 18, 2022

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guacke
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@guacke guacke commented Oct 12, 2022

(created using eb --new-pr)

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guacke commented Oct 12, 2022

Based on work done in PR #12582.

@casparvl casparvl added the new label Oct 13, 2022
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@boegelbot please test @ generoso

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@casparvl: Request for testing this PR well received on login1

PR test command 'EB_PR=16394 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16394 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 9273

Test results coming soon (I hope)...

- notification for comment with ID 1277757760 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/daaece2ab0a3091912717a21e4f42587 for a full test report.

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@boegelbot please test @ generoso

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@casparvl: Request for testing this PR well received on login1

PR test command 'EB_PR=16394 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16394 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 9287

Test results coming soon (I hope)...

- notification for comment with ID 1279126755 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns4 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/ca67087ebf52c8e547a0d93e12dedb92 for a full test report.

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@boegelbot please test @ jsc-zen2

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@casparvl: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=16394 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16394 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 1695

Test results coming soon (I hope)...

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it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
FAILED
Build succeeded for 3 out of 4 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/0ee4af696e25497280d096850437b8cf for a full test report.

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The download link for Pmw-patched seems to not be working

== 2022-10-14 16:00:43,887 filetools.py:835 WARNING URL https://github.com/schrodinger/pmw-patched/archive/Pmw-patched-2.0.1-20200210-8bedfc8.zip was not found (HTTP response code 404), not trying again

Could you review the validity of the source_url and filename? You can make sure it works by passing --force-download to EasyBuild, to make sure it redownloads the file (instead of picking it up from your local source cache directory)

@guacke guacke requested a review from casparvl October 15, 2022 11:08
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@boegelbot please test @ jsc-zen2

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@casparvl: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=16394 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16394 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 1698

Test results coming soon (I hope)...

- notification for comment with ID 1280716831 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/22508d7f32b1fd8851f437c83fcbb292 for a full test report.

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Test report by @casparvl
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
software2.lisa.surfsara.nl - Linux debian 10.13, x86_64, Intel(R) Xeon(R) Bronze 3104 CPU @ 1.70GHz, 4 x NVIDIA NVIDIA TITAN V, 470.103.01, Python 3.7.3
See https://gist.github.com/6a57f7be6f670c3d5dd61d8b39bf4bba for a full test report.

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Lgtm!

@casparvl casparvl added this to the release after 4.6.2 milestone Oct 18, 2022
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Going in, thanks @guacke!

@casparvl casparvl merged commit b946968 into easybuilders:develop Oct 18, 2022
@casparvl casparvl removed this from the release after 4.6.2 milestone Oct 18, 2022
@casparvl casparvl added this to the next release (4.6.2?) milestone Oct 18, 2022
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boegel commented Oct 18, 2022

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (1 easyconfigs in total)
node3116.skitty.os - Linux RHEL 8.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/3f32abf5bf2b331ff21e56ac63080753 for a full test report.

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4 participants