0.2.1
- Re-added the "filter" option to the TaxonResolver class and CLI
- Several improvements in usability and consistency
0.2.0
- Improved performance with Nested Sets
- Added new pandas dependency
- Tree "schema" stored as a pandas
DataFrame - Modified Preorder Tree Traversal markup is used for quick tree search
- Improved search times by reducing the number of subtrees searched
- Additional optimisations by using Python
sets - Updated description in the
README.rst
0.1.0
- Removed the "Any Python Tree" anytree dependency
- Large refactoring and rewrite of the TaxonResolver class
- Removed TaxonResolverFast and fast mode
- New test cases based on a mock tree testdata/nodes_mock.dmp
- Simplified usage of the class and CLI
- Only currently working with pickle format for writing and loading
- Searching takes included, excluded and filter lists of TaxIDs
- Validation only takes included TaxIDs
- CLI search and validate can take multiple TaxIDs at once
0.0.6
- Additional fixes and improvements for missing and invalid TaxIDs
0.0.5
- Brought TaxonResolverFast in line with the functionality of TaxonResolver
- Searching and validation based on lists of TaxIDs (instead of relying only on files)
- Updated CLI to take multiple filter files
- Updated CLI to take comma-separated values for search and validation
- CLI writes to STDOUT by default for search and validation
- Capturing a list TaxIDs used for filter, which allows searching and validation without having to provide them again
0.0.4
- Fixed the logic under validation and searching
- Added TaxonResolverFast class for faster searching and validation (but it requires a built Tree)
- Added --mode 'fast' mode to the CLI
0.0.3
- Improved filtering and searching functions
- Searching performs validation to prevent searching exceptions/errors
- Added search/validate 'by taxid' methods
- Added cached search as an option
0.0.2
- Added wrapper class and methods to work with the Taxonomy Resolver
- Added functions to build a Tree and converting it to anytree Tree (with re-parenting)
- Added command-line interface (CLI) with sub-commands for common functions
0.0.1
- Started development