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layout title venue address country language latitude longitude humandate humantime startdate enddate instructor helper email collaborative_notes eventbrite
workshop
Ed-DaSH FAIR bio practice
University of Edinburgh
online
gb
en
55.96327
-3.23222
19 - 22 October 2021
13:00 - 17:00
2021-10-19
2021-10-22
Tomasz Zielinski
Andrés Romanowski
Tomasz Zielinski
Andrés Romanowski
Ines Boehm
Ben Thomas
Livia Scorza
bio_rdm@ed.ac.uk

{% comment %} See instructions in the comments below for how to edit specific sections of this workshop template. {% endcomment %}

{% comment %} HEADER

Edit the values in the block above to be appropriate for your workshop. If the value is not 'true', 'false', 'null', or a number, please use double quotation marks around the value, unless specified otherwise. And run 'make workshop-check' before committing to make sure that changes are good. {% endcomment %}

{% comment %} 8< ============= For a workshop delete from here ============= For a workshop please delete the following block until the next dashed-line {% endcomment %}

{% comment %} 8< ============================= until here ================== {% endcomment %}

{% comment %} Check DC curriculum {% endcomment %}

{% comment %} Check SWC curriculum {% endcomment %}

{% comment %} EVENTBRITE

This block includes the Eventbrite registration widget if 'eventbrite' has been set in the header. You can delete it if you are not using Eventbrite, or leave it in, since it will not be displayed if the 'eventbrite' field in the header is not set.

{% endcomment %}

{% if page.eventbrite %} Some adblockers block the registration window. If you do not see the registration box below, please check your adblocker settings.

<iframe src="https://www.eventbrite.com/tickets-external?eid={{page.eventbrite}}&ref=etckt" frameborder="0" width="100%" height="280px" scrolling="auto"> </iframe> {% endif %}

{% comment %}

INTRODUCTION

Edit the general explanatory paragraph below if you want to change the pitch. {% endcomment %} {% if site.carpentry == "swc" %} {% include swc/intro.html %} {% elsif site.carpentry == "dc" %} {% include dc/intro.html %} {% elsif site.carpentry == "lc" %} {% include lc/intro.html %} {% endif %}

Overview

FAIR in (Biological) Practice

Open Science is disruptive. It will change how we do reasearch and how society benefits from it. Making data re-usable is key to this, and FAIR principles are a way to achieve it.

  • But what does it mean in practice?
  • How can a biologist incorporate those principles in their workflow?
  • We will learn that becoming FAIR and following OS practices is a process.

We will teach you how planning and using the correct set of tools you can make your outputs ready for public sharing and reuse.

This hands-on 4 half-day sessions workshop covers the basics of Open Science and FAIR practices, and looks at how to use these ideas in your own projects. The workshop is a mix of lectures and hands-on lessons where you will use the approaches learned and implement some of the discussed practices.

The course is aimed at active researchers in biomedicine science (PhD students, postdocs, technicians, young PIs etc.) who are interested in Open Science, FAIR (Findable, Accessible, Interoperable and Reusable) principles and data management. This training is aimed at those who want to be familiar with these concepts and apply them throughout their project’s life cycle. The course is covered in four half days.

Ed-DaSH

Ed-DaSH is a Data Science training programme for Health and Biosciences. The team has developed workshops using The Carpentries platform on the following topics. See workshops for dates and registration details. All workshops will be delivered remotely.

General Information

Registration: Online
The course is free but there is a 50 pounds holding deposit refunded after attending the workshop.

{% comment %}

AUDIENCE

Explain who your audience is. (In particular, tell readers if the workshop is only open to people from a particular institution.

{% endcomment %}

{% if site.carpentry == "swc" %} {% include swc/who.html %} {% elsif site.carpentry == "dc" %} {% include dc/who.html %} {% elsif site.carpentry == "lc" %} {% include lc/who.html %} {% endif %}

{% comment %} LOCATION

This block displays the address and links to maps showing directions if the latitude and longitude of the workshop have been set. You can use https://itouchmap.com/latlong.html to find the lat/long of an address. {% endcomment %}

{% assign begin_address = page.address | slice: 0, 4 | downcase %} {% if page.address == "online" %} {% assign online = "true_private" %} {% elsif begin_address contains "http" %} {% assign online = "true_public" %} {% else %} {% assign online = "false" %} {% endif %}

{% if page.latitude and page.longitude and online == "false" %}

Where: {{page.address}} Get directions with OpenStreetMap or Google Maps.

{% elsif online == "true_public" %}

Where: online at {{page.address}}. If you need a password or other information to access the training, the instructor will pass it on to you before the workshop.

{% elsif online == "true_private" %}

Where: This training will take place online. The instructors will provide you with the information you will need to connect to this meeting.

{% endif %}

{% comment %}

DATE

This block displays the date and links to Google Calendar.

{% endcomment %}

{% if page.humandate %}

When: {{page.humandate}}. {% include workshop_calendar.html %}

{% endif %}

{% comment %}

SPECIAL REQUIREMENTS

Modify the block below if there are any special requirements.

{% endcomment %}

Requirements: {% if online == "false" %} Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.). {% else %} Participants must have access to a computer with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.). {% endif %}

{% comment %}

ACCESSIBILITY

Modify the block below if there are any barriers to accessibility or special instructions.

{% endcomment %}

Accessibility: {% if online == "false" %} We are committed to making this workshop accessible to everybody. The workshop organizers have checked that:

  • The room is wheelchair / scooter accessible.
  • Accessible restrooms are available.

Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.

{% else %} We are dedicated to providing a positive and accessible learning environment for all. Please notify the instructors in advance of the workshop if you require any accommodations or if there is anything we can do to make this workshop more accessible to you.

{% endif %}

{% comment %}

CONTACT EMAIL ADDRESS

Display the contact email address set in the configuration file.

{% endcomment %}

Contact: Please email {% if page.email %} {% for email in page.email %} {% if forloop.last and page.email.size > 1 %} or {% else %} {% unless forloop.first %} , {% endunless %} {% endif %} {{email}} {% endfor %} {% else %} to-be-announced {% endif %} for more information.

Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.

{% comment %}

WHO CAN ATTEND?

If you would like to specify who can attend the workshop, you can use the section below.

Move the 'endcomment' tag above the beginning of the following

tag to make this section visible.

Edit the text to match who can attend the workshop. For instance:

  • This workshop is open to affiliates to ABC university.
  • This workshop is open to the public.
  • If you are interested in attending this workshop, contact me@example.com for more information

Who can attend?: This workshop is open to ....

{% endcomment %}

{% comment%}

CODE OF CONDUCT

{% endcomment %}

Code of Conduct

Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.

Report a Code of Conduct Incident

{% comment %}

Collaborative Notes

If you want to use an Etherpad, go to

https://pad.carpentries.org/YYYY-MM-DD-site

where 'YYYY-MM-DD-site' is the identifier for your workshop, e.g., '2015-06-10-esu'.

Note we also have a CodiMD (the open-source version of HackMD) available at https://codimd.carpentries.org

{% endcomment %}

{% if page.collaborative_notes %}

Collaborative Notes

We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.

{% endif %}

{% comment %}

SURVEYS - DO NOT EDIT SURVEY LINKS

{% endcomment %}

{% comment %}

SCHEDULE

Show the workshop's schedule.

Small changes to the schedule can be made by modifying the schedule.html found in the _includes folder for your workshop type (swc, lc, or dc). Edit the items and times in the table to match your plans. You may also want to change 'Day 1' and 'Day 2' to be actual dates or days of the week.

For larger changes, a blank template for a 4-day workshop (useful for online teaching for instance) can be found in _includes/custom-schedule.html. Add the times, and what you will be teaching to this file. You may also want to add rows to the table if you wish to break down the schedule further. To use this custom schedule here, replace the block of code below the Schedule <h2> header below with {% include custom-schedule.html %}.

{% endcomment %}

Schedule

{% if site.carpentry == "swc" %} {% include swc/schedule.html %}

{% elsif site.carpentry == "dc" %} {% include dc/schedule.html %}

{% elsif site.carpentry == "lc" %} {% include lc/schedule.html %}

{% elsif site.carpentry == "pilot" %}

The lesson taught in this workshop is being piloted and a precise schedule is yet to be established.

{% include custom-schedule.html %}

{% comment %} Edit/replace the text above if you want to include a schedule table. See the contents of the _includes/custom-schedule.html file for an example of how one of these schedule tables is constructed.

{% endcomment %}

{% else %} {% include custom-schedule.html %}

{% endif %}

{% comment %}

SETUP

Delete irrelevant sections from the setup instructions. Each section is inside a 'div' without any classes to make the beginning and end easier to find.

This is the other place where people frequently make mistakes, so please preview your site before committing, and make sure to run 'tools/check' as well.

{% endcomment %}

Setup

To participate in a {% if site.carpentry == "swc" %} Software Carpentry

{% elsif site.carpentry == "dc" %} Data Carpentry

{% elsif site.carpentry == "lc" %} Library Carpentry

{% endif %}

workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

{% comment %}

For online workshops, the section below provides:

  • installation instructions for the Zoom client
  • recommendations for setting up Learners' workspace so they can follow along the instructions and the videoconferencing

If you do not use Zoom for your online workshop, edit the file _includes/install_instructions/videoconferencing.html to include the relevant installation instrucctions.

{% endcomment %}

{% if online != "false" %} {% include install_instructions/videoconferencing.html %} {% endif %}

{% comment %}

These are the installation instructions for the tools used during the workshop.

{% endcomment %}

{% if site.carpentry == "swc" %} {% include swc/setup.html %}

{% elsif site.carpentry == "dc" %} {% include dc/setup.html %}

{% elsif site.carpentry == "lc" %} {% include lc/setup.html %}

{% elsif site.carpentry == "pilot" %}

{% endif %}