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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(GOannotation)
export(align_run)
export(compute_labels)
export(cor_batch)
export(cut_markers)
export(defac_matrix)
export(identity_heatmap)
export(identity_map)
export(markers_by_specificity)
export(matchSCore)
export(matchSCore2)
export(rank_sim)
export(scores)
export(seurat3_run)
export(summary_barplot)
export(tool_scores_by_specificity)
export(train_model)
export(tscores_plots)
importFrom(Matrix,colSums)
importFrom(S4Vectors,DataFrame)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,ElbowPlot)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,VariableFeatures)
importFrom(Seurat,`VariableFeatures<-`)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,rowData)
importFrom(corpcor,fast.svd)
importFrom(corrplot,corrplot)
importFrom(cowplot,plot_grid)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_colour_gradientn)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(graphics,plot)
importFrom(grid,unit)
importFrom(methods,new)
importFrom(nnet,multinom)
importFrom(org.Hs.eg.db,org.Hs.egALIAS2EG)
importFrom(org.Hs.eg.db,org.Hs.egGO2ALLEGS)
importFrom(org.Mm.eg.db,org.Mm.egALIAS2EG)
importFrom(org.Mm.eg.db,org.Mm.egGO2ALLEGS)
importFrom(reshape2,melt)
importFrom(stats,cor)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(topGO,GOKSTest)
importFrom(topGO,GenTable)
importFrom(topGO,annFUN.GO2genes)
importFrom(topGO,annFUN.org)
importFrom(topGO,getSigGroups)
importFrom(topGO,printGraph)
importFrom(topGO,score)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)