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Kjell Petersen edited this page Aug 31, 2022
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(Formerly a more deployment docs focussed wiki only, that content is still here :))
This wiki is meant to be the central hub for the team, to find pointers for resources and docuementation from here. That does not mean that all docs should be wiki pages, they will created by many sources in different systems, but the FEGA Norway team should make this "the go to place" to find an overview and how to dig more into details, either here or in other locations.
- Architecture overview
- List of useful presentations
- FEGA Norway production web site: https://ega.elixir.no
- FEGA Norway test stack web site: https://tryggve.tsd.usit.uio.no
- Installation/access details prod vs test vs dev vs github
- Federated EGA governance structure
- An overview description of what is needed to deploy from scratch
- Index page for different deployment parts
- TSD file API: https://data.tsd.usit.no/api/tsd-api-integration.html
- CRG’s documentation page: https://localega.readthedocs.io/en/latest/
- NeIC documentation page: https://neic-sda.readthedocs.io/en/latest/
- Crypt4GH specification: http://samtools.github.io/hts-specs/crypt4gh.pdf
- Video on Norwegian microservices: https://vimeo.com/487279078
- https://github.com/elixir-oslo/crypt4gh (GO version, admins: Ahmed, Kjell, Stefan, Johan)
- https://github.com/elixir-oslo/lega-commander (GO version, admin: Kjell, write: Arash, Joshua, Kjetil, Parisa Maintain: Ahmed. )
- https://github.com/elixir-oslo/clearinghouse (Java, admins [Ahemd , Kjell], maintainers [Stefan, Johan], write: Joshua, Kjetil, Parisa)
- https://github.com/elixir-oslo/lega-utils contains utils.py script used in Manual Data-Out, most recent version is inside p969, latest changes must be updated to github.
- https://github.com/uio-bmi/crypt4gh (Java, Kjell maintainer)
- https://github.com/uio-bmi/TSD-File-API-client (Java, localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/uio-bmi/TSD-File-API-stub (Java , localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/uio-bmi/LocalEGA-TSD-proxy (Java , localega team admin [Kjell, Ahmed, Fabian, Milen], write access Arash)
- https://github.com/uio-bmi/NFEGA-webpages (Mostly wiki , localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/uio-bmi/mq-interceptor (GO, localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/uio-bmi/localega-broker (RMQ config/Shell , localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/neicnordic/LocalEGA-deploy-swarm/ (Java, sda-dev-collab team admin [Kjell, Arash, Ahmed, Fabian] )
- https://github.com/neicnordic/sda-pipeline (GO, sda-dev-collab team admin [Kjell, Arash, Ahmed, Fabian])
- https://github.com/neicnordic/sda-doa ( Java, sda-dev-collab team admin [Kjell, Arash, Ahmed, Fabian] )
- https://github.com/neicnordic/sda-db (postgres/entrypoint.sh/configs, sda-dev-collab team admin [Kjell, Arash, Ahmed, Fabian])