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Welcome to the NFEGA deployment docs wiki!

Overview intro docs

• An overview description of what is needed to deploy from scratch

Some keywords on topics that should be covered:

Architecture overview

• Naming conventions

NFEGA USIT server

• Docker setup
• Web setup
• Proxy services
• Configuration
  • Connectivity to CEGA
  • Database connectivity

NFEGA TSD project backend server

• Docker setup
• Installation of microservices
• Configuration
• Deployment of keys (vault, self-signed messages)
• Configuration of host, docker, services
  • Connectivity to NFEGA USIT server (proxy)
  • Database connectivity

Automation

• A Makefile exists for some parts
• Ansible an option

Maintenance of secrets

• Overview of secrets used by the system
• Secure solution for storing them and provide access to people that need it.

Relevant external documentation links

• CRG’s documentation page: https://localega.readthedocs.io/en/latest/
• NeIC documentation page: https://neic-sda.readthedocs.io/en/latest/
• Crypt4GH specification: http://samtools.github.io/hts-specs/crypt4gh.pdf
• Video on Norwegian microservices: https://vimeo.com/487279078

List of code repositories

• https://github.com/elixir-oslo/crypt4gh
• https://github.com/elixir-oslo/lega-commander
• https://github.com/elixir-oslo/clearinghouse
• https://github.com/elixir-oslo/lega-utils contains utils.py script used in Manual Data-Out, most recent version is inside p969, latest changes must be updated to github.
• https://github.com/uio-bmi/crypt4gh
• https://github.com/uio-bmi/TSD-File-API-client
• https://github.com/uio-bmi/TSD-File-API-stub
• https://github.com/uio-bmi/LocalEGA-TSD-proxy
• https://github.com/uio-bmi/mq-interceptor
• https://github.com/uio-bmi/localega-broker
• https://github.com/neicnordic/LocalEGA-deploy-swarm/
• https://github.com/neicnordic/sda-pipeline
• https://github.com/neicnordic/sda-doa
• https://github.com/neicnordic/sda-db