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requirements.txt
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requirements.txt
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# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=conda_forge
_openmp_mutex=4.5=2_kmp_llvm
_py-xgboost-mutex=2.0=gpu_0
absl-py=1.4.0=pypi_0
access=1.1.9=pypi_0
adjusttext=0.7.3=pypi_0
affine=2.4.0=pypi_0
aiohttp=3.8.4=pypi_0
aiosignal=1.3.1=pypi_0
alsa-lib=1.2.8=h166bdaf_0
aniso8601=9.0.1=pypi_0
anndata=0.9.1=pyhd8ed1ab_0
annoy=1.17.3=pypi_0
ansi2html=1.8.0=pypi_0
antlr4-python3-runtime=4.9.3=pypi_0
anyio=3.7.0=pyhd8ed1ab_1
appdirs=1.4.4=pyhd3eb1b0_0
argon2-cffi=21.3.0=pyhd8ed1ab_0
argon2-cffi-bindings=21.2.0=py310h5764c6d_3
arrow=1.2.3=pypi_0
asteroid=0.5.2=pypi_0
asteroid-filterbanks=0.4.0=pypi_0
asttokens=2.2.1=pyhd8ed1ab_0
astunparse=1.6.3=pypi_0
async-lru=2.0.2=pyhd8ed1ab_0
async-timeout=4.0.2=pypi_0
attr=2.5.1=h166bdaf_1
attrs=23.1.0=pyh71513ae_1
babel=2.12.1=pyhd8ed1ab_1
backcall=0.2.0=pyh9f0ad1d_0
backoff=2.2.1=pypi_0
backports=1.0=pyhd8ed1ab_3
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
bamnostic=1.1.10=pypi_0
bbknn=1.5.1=pypi_0
beautifulsoup4=4.12.2=pyha770c72_0
bio-epidemiology-ner=0.1.3=pypi_0
bioinfokit=2.1.0=pypi_0
bleach=6.0.0=pyhd8ed1ab_0
blinker=1.6.2=pypi_0
blosc2=2.2.9=pypi_0
bokeh=3.1.1=pypi_0
boto3=1.26.159=pypi_0
botocore=1.29.159=pypi_0
braceexpand=0.1.7=pypi_0
branca=0.6.0=pypi_0
brotli=1.0.9=h5eee18b_7
brotli-bin=1.0.9=h5eee18b_7
brotlipy=0.7.0=py310h7f8727e_1002
bzip2=1.0.8=h7b6447c_0
c-ares=1.18.1=h7f98852_0
ca-certificates=2023.11.17=hbcca054_0
cached-property=1.5.2=hd8ed1ab_1
cached_property=1.5.2=pyha770c72_1
cachetools=5.3.0=pypi_0
cairo=1.16.0=hbbf8b49_1016
catalogue=2.0.7=py310h06a4308_0
certifi=2023.11.17=pyhd8ed1ab_0
cffi=1.15.1=py310h5eee18b_3
cfgv=3.4.0=pypi_0
charset-normalizer=2.1.1=pypi_0
click=8.1.3=pypi_0
click-plugins=1.1.1=pypi_0
cligj=0.7.2=pypi_0
cmake=3.26.3=pypi_0
colorama=0.4.6=pyhd8ed1ab_0
colorcet=3.0.1=pypi_0
combat=0.3.3=pypi_0
comet-ml=3.32.8=pypi_0
comm=0.1.3=pyhd8ed1ab_0
confection=0.0.4=py310h2f386ee_0
configobj=5.0.8=pypi_0
contourpy=1.0.5=py310hdb19cb5_0
cryptography=38.0.4=py310h600f1e7_0
csbdeep=0.7.4=pypi_0
cudatoolkit=11.3.1=h2bc3f7f_2
cudnn=8.4.1.50=hed8a83a_0
cvxopt=1.3.2=pypi_0
cycler=0.11.0=pyhd3eb1b0_0
cymem=2.0.6=py310h295c915_0
cython=0.29.34=pypi_0
cython-blis=0.7.9=py310ha9d4c09_0
dash=2.11.0=pypi_0
dash-core-components=2.0.0=pypi_0
dash-cytoscape=0.3.0=pypi_0
dash-html-components=2.0.0=pypi_0
dash-table=5.0.0=pypi_0
db-dtypes=1.1.1=pypi_0
dbus=1.13.6=h5008d03_3
debugpy=1.6.7=py310heca2aa9_0
decorator=5.1.1=pyhd8ed1ab_0
defusedxml=0.7.1=pyhd8ed1ab_0
deprecated=1.2.14=pypi_0
deprecation=2.1.0=pypi_0
descartes=1.1.0=pypi_0
distlib=0.3.7=pypi_0
docker-pycreds=0.4.0=pypi_0
dulwich=0.21.3=pypi_0
dunamai=1.16.0=pypi_0
dynamo-release=1.3.2=pypi_0
einops=0.6.1=pypi_0
entrypoints=0.4=pyhd8ed1ab_0
episcanpy=0.4.0=pypi_0
esda=2.5.0=pypi_0
et-xmlfile=1.1.0=pypi_0
everett=3.1.0=pypi_0
exceptiongroup=1.1.1=pyhd8ed1ab_0
executing=1.2.0=pyhd8ed1ab_0
expat=2.5.0=hcb278e6_1
faiss-cpu=1.7.4=pypi_0
fast-histogram=0.12=pypi_0
fastai=2.7.12=py_0
fastcore=1.5.29=py_0
fastdownload=0.0.7=py_0
fastprogress=1.0.3=py_0
fasttext=0.9.2=pypi_0
fbgbp=0.2.1=pypi_0
filelock=3.12.4=pypi_0
fiona=1.9.5=pypi_0
flask=2.2.5=pypi_0
flask-restful=0.3.10=pypi_0
flatbuffers=23.5.26=pypi_0
flit-core=3.9.0=pyhd8ed1ab_0
folium=0.14.0=pypi_0
font-ttf-dejavu-sans-mono=2.37=hab24e00_0
font-ttf-inconsolata=3.000=h77eed37_0
font-ttf-source-code-pro=2.038=h77eed37_0
font-ttf-ubuntu=0.83=hab24e00_0
fontconfig=2.14.2=h14ed4e7_0
fonts-conda-ecosystem=1=0
fonts-conda-forge=1=0
fonttools=4.25.0=pyhd3eb1b0_0
fqdn=1.5.1=pypi_0
freetype=2.12.1=hca18f0e_1
frozenlist=1.3.3=pypi_0
fsspec=2023.4.0=pypi_0
ftfy=6.1.1=pypi_0
future=0.18.3=pypi_0
gast=0.5.4=pypi_0
gdown=4.7.1=pypi_0
geopandas=0.14.0=pypi_0
get-version=3.5.4=pypi_0
gettext=0.21.1=h27087fc_0
giddy=2.3.4=pypi_0
gitdb=4.0.10=pypi_0
gitpython=3.1.31=pypi_0
glib=2.76.3=hfc55251_0
glib-tools=2.76.3=hfc55251_0
gmp=6.2.1=h295c915_3
gmpy2=2.1.2=py310heeb90bb_0
google-api-core=2.11.1=pypi_0
google-auth=2.17.3=pypi_0
google-auth-oauthlib=1.0.0=pypi_0
google-cloud-bigquery=2.34.3=pypi_0
google-cloud-core=2.3.2=pypi_0
google-cloud-sdk=435.0.1=py310hff52083_0
google-crc32c=1.5.0=pypi_0
google-pasta=0.2.0=pypi_0
google-resumable-media=2.5.0=pypi_0
googleapis-common-protos=1.59.1=pypi_0
graphite2=1.3.13=h58526e2_1001
grpcio=1.54.2=pypi_0
grpcio-status=1.54.2=pypi_0
gseapy=1.0.5=pypi_0
gst-plugins-base=1.22.3=h938bd60_1
gstreamer=1.22.3=h977cf35_1
h5py=3.8.0=nompi_py310ha66b2ad_101
harfbuzz=7.3.0=hdb3a94d_0
hdf5=1.14.0=nompi_hb72d44e_103
holoviews=1.16.2=pypi_0
huggingface-hub=0.15.1=pypi_0
hydra-core=1.2.0=pypi_0
icu=72.1=hcb278e6_0
identify=2.5.30=pypi_0
idna=3.4=py310h06a4308_0
igraph=0.10.8=pypi_0
ijson=3.2.2=pypi_0
imageio=2.31.5=pypi_0
importlib-metadata=6.5.0=pyha770c72_0
importlib_metadata=6.5.0=hd8ed1ab_0
importlib_resources=5.12.0=pyhd8ed1ab_0
inequality=1.0.0=pypi_0
inflect=6.0.4=pypi_0
intervaltree=3.1.0=pypi_0
ipadic=1.0.0=pypi_0
ipdb=0.13.13=pyhd8ed1ab_0
ipykernel=6.23.1=pyh210e3f2_0
ipython=8.12.0=pyh41d4057_0
ipython_genutils=0.2.0=py_1
ipywidgets=8.0.6=pyhd8ed1ab_0
isoduration=20.11.0=pypi_0
itsdangerous=2.1.2=pypi_0
jedi=0.18.2=pyhd8ed1ab_0
jeepney=0.8.0=pypi_0
jieba=0.42.1=pypi_0
jinja2=3.1.2=py310h06a4308_0
jmespath=1.0.1=pypi_0
joblib=1.1.1=py310h06a4308_0
json5=0.9.5=pyh9f0ad1d_0
jsonpointer=2.4=pypi_0
jsonschema=4.17.3=pyhd8ed1ab_0
julius=0.2.7=pypi_0
jupyter=1.0.0=py310hff52083_8
jupyter-dash=0.4.2=pypi_0
jupyter-lsp=2.2.0=pyhd8ed1ab_0
jupyter-server-mathjax=0.2.6=pypi_0
jupyter-server-proxy=4.0.0=pypi_0
jupyter_client=8.2.0=pyhd8ed1ab_0
jupyter_console=6.6.3=pyhd8ed1ab_0
jupyter_core=4.12.0=py310hff52083_0
jupyter_events=0.6.3=pyhd8ed1ab_0
jupyter_server=2.6.0=pyhd8ed1ab_0
jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
jupyterlab=4.0.2=pyhd8ed1ab_0
jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
jupyterlab_server=2.23.0=pyhd8ed1ab_0
jupyterlab_widgets=3.0.7=pyhd8ed1ab_1
kdepy=1.1.8=pypi_0
keras=2.14.0=pypi_0
keyring=23.4.1=pypi_0
keyrings-alt=3.1=pypi_0
keyutils=1.6.1=h166bdaf_0
kiwisolver=1.4.4=py310h6a678d5_0
kneed=0.8.3=pypi_0
kornia=0.7.0=pypi_0
krb5=1.20.1=h81ceb04_0
lame=3.100=h166bdaf_1003
langcodes=3.3.0=pyhd3eb1b0_0
lazy-loader=0.3=pypi_0
lcms2=2.15=haa2dc70_1
ld_impl_linux-64=2.38=h1181459_1
legacy-api-wrap=1.2=pypi_0
lerc=4.0.0=h27087fc_0
libaec=1.0.6=hcb278e6_1
libblas=3.9.0=16_linux64_openblas
libbrotlicommon=1.0.9=h5eee18b_7
libbrotlidec=1.0.9=h5eee18b_7
libbrotlienc=1.0.9=h5eee18b_7
libcap=2.67=he9d0100_0
libcblas=3.9.0=16_linux64_openblas
libclang=16.0.6=pypi_0
libclang13=16.0.6=default_h4d60ac6_0
libcups=2.3.3=h36d4200_3
libcurl=8.0.1=h588be90_0
libdeflate=1.18=h0b41bf4_0
libedit=3.1.20191231=he28a2e2_2
libev=4.33=h516909a_1
libevent=2.1.12=hf998b51_1
libexpat=2.5.0=hcb278e6_1
libffi=3.4.2=h6a678d5_6
libflac=1.4.2=h27087fc_0
libgcc-ng=12.2.0=h65d4601_19
libgcrypt=1.10.1=h166bdaf_0
libgfortran-ng=12.2.0=h69a702a_19
libgfortran5=12.2.0=h337968e_19
libglib=2.76.3=hebfc3b9_0
libgpg-error=1.46=h620e276_0
libiconv=1.17=h166bdaf_0
libjpeg-turbo=2.1.5.1=h0b41bf4_0
liblapack=3.9.0=16_linux64_openblas
libllvm11=11.1.0=he0ac6c6_5
libllvm16=16.0.6=h5cf9203_0
libmagma=2.7.1=hc72dce7_1
libmagma_sparse=2.7.1=hc72dce7_2
libnghttp2=1.52.0=h61bc06f_0
libnsl=2.0.0=h5eee18b_0
libogg=1.3.4=h7f98852_1
libopenblas=0.3.21=h043d6bf_0
libopus=1.3.1=h7f98852_1
libpng=1.6.39=h753d276_0
libpq=15.3=hbcd7760_1
libprotobuf=3.21.12=h3eb15da_0
libpysal=4.8.0=pypi_0
libsndfile=1.2.0=hb75c966_0
libsodium=1.0.18=h36c2ea0_1
libsqlite=3.42.0=h2797004_0
libssh2=1.10.0=hf14f497_3
libstdcxx-ng=12.2.0=h46fd767_19
libsystemd0=253=h8c4010b_1
libtiff=4.5.0=ha587672_6
libuuid=2.38.1=h0b41bf4_0
libvorbis=1.3.7=h9c3ff4c_0
libwebp-base=1.3.0=h0b41bf4_0
libxcb=1.15=h0b41bf4_0
libxgboost=1.7.4=cuda112h075c576_0
libxkbcommon=1.5.0=h5d7e998_3
libxml2=2.11.4=h0d562d8_0
libzlib=1.2.13=h166bdaf_4
lightning-utilities=0.8.0=pypi_0
linkify-it-py=2.0.2=pypi_0
lit=16.0.1=pypi_0
llvm-openmp=16.0.1=h417c0b6_0
llvmlite=0.39.1=py310h58363a5_1
logging-release=0.0.4=pypi_0
loompy=3.0.7=pypi_0
louvain=0.8.0=pypi_0
lxml=4.9.2=pypi_0
lz4-c=1.9.4=hcb278e6_0
magma=2.7.1=ha770c72_2
many=0.6.9=pypi_0
mapclassify=2.6.1=pypi_0
markdown=3.4.3=pypi_0
markdown-it-py=2.2.0=pypi_0
markdown2=2.4.9=pypi_0
markupsafe=2.1.1=py310h7f8727e_0
matplotlib=3.7.1=py310h06a4308_1
matplotlib-base=3.7.1=py310h1128e8f_1
matplotlib-inline=0.1.6=pyhd8ed1ab_0
matplotlib-venn=0.11.9=pypi_0
mdit-py-plugins=0.4.0=pypi_0
mdurl=0.1.2=pypi_0
mecab-python3=1.0.5=pypi_0
megatron-core=0.2.0=pypi_0
mgwr=2.1.2=pypi_0
mir-eval=0.7=pypi_0
mistune=2.0.5=pyhd8ed1ab_0
mkl=2022.2.1=h84fe81f_16997
ml-dtypes=0.2.0=pypi_0
momepy=0.6.0=pypi_0
mpc=1.1.0=h10f8cd9_1
mpfr=4.0.2=hb69a4c5_1
mpg123=1.31.3=hcb278e6_0
mpl-scatter-density=0.7=pypi_0
mpmath=1.2.1=pypi_0
msgpack=1.0.7=pypi_0
multidict=6.0.4=pypi_0
munkres=1.1.4=py_0
murmurhash=1.0.7=py310h295c915_0
mysql-common=8.0.32=hf1915f5_3
mysql-libs=8.0.32=hca2cd23_3
natsort=8.3.1=pyhd8ed1ab_0
nbclassic=1.0.0=pyhb4ecaf3_1
nbclient=0.8.0=pyhd8ed1ab_0
nbconvert=7.5.0=pyhd8ed1ab_0
nbconvert-core=7.5.0=pyhd8ed1ab_0
nbconvert-pandoc=7.5.0=pyhd8ed1ab_0
nbdime=3.2.1=pypi_0
nbformat=5.9.0=pyhd8ed1ab_0
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