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Crash on file read, Julia 1.11 #16

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bensetterholm opened this issue Apr 11, 2024 · 10 comments
Closed

Crash on file read, Julia 1.11 #16

bensetterholm opened this issue Apr 11, 2024 · 10 comments

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@bensetterholm
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When I try to read in files with Julia 1.11, I sometimes (most of the time in fact) get a crash. Usually, Julia crashes outright, but sometimes there is a conversion error, and sometimes I get a partial error message but the file read continues fine, and sometimes there is no error at all. I reproduce this error in Windows 11 and Ubuntu Linux. I have never seen this error in Julia <1.10.

MWE:

julia> using OIFITS

julia> read(OIDataSet, joinpath(dirname(pathof(OIFITS)), "../test", "contest-2008-binary.oifits"))
Crash on Windows 
PS C:\Users\bense> julia +beta
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.11.0-beta1 (2024-04-10)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using OIFITS

julia> read(OIDataSet, joinpath(dirname(pathof(OIFITS)), "../test", "contest-2008-binary.oifits"))

Please submit a bug report with steps to reproduce this fault, and any error messages that follow (in their entirety). Thanks.
Exception: EXCEPTION_ACCESS_VIOLATION at 0x7ffd903a6cd0 -- jl_gc_pool_alloc_inner at C:/workdir/src\gc.c:1329
in expression starting at REPL[2]:1
jl_gc_pool_alloc_inner at C:/workdir/src\gc.c:1329
jl_gc_pool_alloc_noinline at C:/workdir/src\gc.c:1386 [inlined]
jl_gc_alloc_ at C:/workdir/src\julia_internal.h:521 [inlined]
jl_gc_alloc at C:/workdir/src\gc.c:3946
_new_genericmemory_ at C:/workdir/src\genericmemory.c:56 [inlined]
jl_alloc_genericmemory at C:/workdir/src\genericmemory.c:99
GenericMemory at .\boot.jl:514 [inlined]
Array at .\boot.jl:576 [inlined]
fits_read_keyword at C:\Users\bense\.julia\packages\CFITSIO\BfhtD\src\CFITSIO.jl:592
read_key at C:\Users\bense\.julia\packages\FITSIO\ggf1s\src\header.jl:241 [inlined]
read_keyword at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:185
read_keyword at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:184 [inlined]
#_read#56 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:393
_read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:390 [inlined]
#_read!#54 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:350
_read! at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:341 [inlined]
#read#30 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:295
read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:289 [inlined]
#28 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:283 [inlined]
#FITS#4 at C:\Users\bense\.julia\packages\FITSIO\ggf1s\src\FITSIO.jl:209
FITS at C:\Users\bense\.julia\packages\FITSIO\ggf1s\src\FITSIO.jl:206 [inlined]
#read#27 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:281 [inlined]
read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:281
unknown function (ip: 00000286f63316a9)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
do_call at C:/workdir/src\interpreter.c:126
eval_value at C:/workdir/src\interpreter.c:223
eval_stmt_value at C:/workdir/src\interpreter.c:174 [inlined]
eval_body at C:/workdir/src\interpreter.c:677
jl_interpret_toplevel_thunk at C:/workdir/src\interpreter.c:817
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:943
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:886
ijl_toplevel_eval at C:/workdir/src\toplevel.c:952 [inlined]
ijl_toplevel_eval_in at C:/workdir/src\toplevel.c:994
eval at .\boot.jl:428 [inlined]
eval_user_input at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:222
repl_backend_loop at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:319
#start_repl_backend#59 at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:304
start_repl_backend at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:301
#run_repl#72 at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:460
run_repl at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:446
jfptr_run_repl_12691 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_e6ieL.dll (unknown line)
#1131 at .\client.jl:441
jfptr_YY.1131_17495 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_e6ieL.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
jl_f__call_latest at C:/workdir/src\builtins.c:875
#invokelatest#2 at .\essentials.jl:1030 [inlined]
invokelatest at .\essentials.jl:1027 [inlined]
run_main_repl at .\client.jl:425
repl_main at .\client.jl:562 [inlined]
_start at .\client.jl:536
jfptr__start_72187.1 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\lib\julia\sys.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
true_main at C:/workdir/src\jlapi.c:900
jl_repl_entrypoint at C:/workdir/src\jlapi.c:1059
mainCRTStartup at C:/workdir/cli\loader_exe.c:58
BaseThreadInitThunk at C:\Windows\System32\KERNEL32.DLL (unknown line)
RtlUserThreadStart at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
Allocations: 5579795 (Pool: 5579576; Big: 219); GC: 6

Please submit a bug report with steps to reproduce this fault, and any error messages that follow (in their entirety). Thanks.
Exception: EXCEPTION_ACCESS_VIOLATION at 0x7ffd903a6cd0 -- jl_gc_pool_alloc_inner at C:/workdir/src\gc.c:1329
in expression starting at REPL[2]:1
jl_gc_pool_alloc_inner at C:/workdir/src\gc.c:1329
jl_gc_pool_alloc_noinline at C:/workdir/src\gc.c:1386 [inlined]
jl_gc_alloc_ at C:/workdir/src\julia_internal.h:521 [inlined]
jl_gc_alloc at C:/workdir/src\gc.c:3946
_new_genericmemory_ at C:/workdir/src\genericmemory.c:56 [inlined]
jl_alloc_genericmemory at C:/workdir/src\genericmemory.c:99
new_array at C:/workdir/src\array.c:91 [inlined]
ijl_alloc_array_1d at C:/workdir/src\array.c:156 [inlined]
ijl_alloc_vec_any at C:/workdir/src\array.c:186
jl_exprn at C:/workdir/src\builtins.c:1617
jl_decode_value_expr at C:/workdir/src\ircode.c:584 [inlined]
jl_decode_value at C:/workdir/src\ircode.c:716
jl_decode_value_memory at C:/workdir/src\ircode.c:505
jl_decode_value_array at C:/workdir/src\ircode.c:555
ijl_uncompress_ir at C:/workdir/src\ircode.c:954
jl_generate_fptr_impl at C:/workdir/src\jitlayers.cpp:499
jl_compile_method_internal at C:/workdir/src\gf.c:2534
jl_compile_method_internal at C:/workdir/src\gf.c:2944 [inlined]
_jl_invoke at C:/workdir/src\gf.c:2938 [inlined]
ijl_apply_generic at C:/workdir/src\gf.c:3123
run_finalizer at C:/workdir/src\gc.c:299
jl_gc_run_finalizers_in_list at C:/workdir/src\gc.c:389
run_finalizers at C:/workdir/src\gc.c:435
ijl_atexit_hook at C:/workdir/src\init.c:299
ijl_exit at C:/workdir/src\init.c:207
jl_exception_handler at C:/workdir/src\signals-win.c:337 [inlined]
jl_exception_handler at C:/workdir/src\signals-win.c:229
__julia_personality at C:/workdir/src\win32_ucontext.c:28
_chkstk at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
RtlFindCharInUnicodeString at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
KiUserExceptionDispatcher at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
jl_gc_pool_alloc_inner at C:/workdir/src\gc.c:1328
jl_gc_pool_alloc_noinline at C:/workdir/src\gc.c:1386 [inlined]
jl_gc_alloc_ at C:/workdir/src\julia_internal.h:521 [inlined]
jl_gc_alloc at C:/workdir/src\gc.c:3946
_new_genericmemory_ at C:/workdir/src\genericmemory.c:56 [inlined]
jl_alloc_genericmemory at C:/workdir/src\genericmemory.c:99
GenericMemory at .\boot.jl:514 [inlined]
Array at .\boot.jl:576 [inlined]
fits_read_keyword at C:\Users\bense\.julia\packages\CFITSIO\BfhtD\src\CFITSIO.jl:592
read_key at C:\Users\bense\.julia\packages\FITSIO\ggf1s\src\header.jl:241 [inlined]
read_keyword at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:185
read_keyword at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:184 [inlined]
#_read#56 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:393
_read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:390 [inlined]
#_read!#54 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:350
_read! at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:341 [inlined]
#read#30 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:295
read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:289 [inlined]
#28 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:283 [inlined]
#FITS#4 at C:\Users\bense\.julia\packages\FITSIO\ggf1s\src\FITSIO.jl:209
FITS at C:\Users\bense\.julia\packages\FITSIO\ggf1s\src\FITSIO.jl:206 [inlined]
#read#27 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:281 [inlined]
read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:281
unknown function (ip: 00000286f63316a9)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
do_call at C:/workdir/src\interpreter.c:126
eval_value at C:/workdir/src\interpreter.c:223
eval_stmt_value at C:/workdir/src\interpreter.c:174 [inlined]
eval_body at C:/workdir/src\interpreter.c:677
jl_interpret_toplevel_thunk at C:/workdir/src\interpreter.c:817
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:943
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:886
ijl_toplevel_eval at C:/workdir/src\toplevel.c:952 [inlined]
ijl_toplevel_eval_in at C:/workdir/src\toplevel.c:994
eval at .\boot.jl:428 [inlined]
eval_user_input at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:222
repl_backend_loop at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:319
#start_repl_backend#59 at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:304
start_repl_backend at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:301
#run_repl#72 at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:460
run_repl at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:446
jfptr_run_repl_12691 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_e6ieL.dll (unknown line)
#1131 at .\client.jl:441
jfptr_YY.1131_17495 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_e6ieL.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
jl_f__call_latest at C:/workdir/src\builtins.c:875
#invokelatest#2 at .\essentials.jl:1030 [inlined]
invokelatest at .\essentials.jl:1027 [inlined]
run_main_repl at .\client.jl:425
repl_main at .\client.jl:562 [inlined]
_start at .\client.jl:536
jfptr__start_72187.1 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\lib\julia\sys.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
true_main at C:/workdir/src\jlapi.c:900
jl_repl_entrypoint at C:/workdir/src\jlapi.c:1059
mainCRTStartup at C:/workdir/cli\loader_exe.c:58
BaseThreadInitThunk at C:\Windows\System32\KERNEL32.DLL (unknown line)
RtlUserThreadStart at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
Allocations: 5579795 (Pool: 5579576; Big: 219); GC: 6
Segmentation fault in Linux 
benjamin@Setterholm:~$ julia +beta
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.11.0-beta1 (2024-04-10)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using OIFITS

julia> read(OIDataSet, joinpath(dirname(pathof(OIFITS)), "../test", "contest-2008-binary.oifits"))

[19376] signal 11 (128): Segmentation fault
in expression starting at REPL[2]:1
jl_gc_pool_alloc_inner at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/gc.c:1336
jl_gc_pool_alloc_noinline at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/gc.c:1386 [inlined]
jl_gc_alloc_ at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/julia_internal.h:521 [inlined]
jl_gc_alloc at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/gc.c:3946
_new_genericmemory_ at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/genericmemory.c:56 [inlined]
jl_alloc_genericmemory at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/genericmemory.c:99
new_array at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/array.c:91 [inlined]
ijl_alloc_array_1d at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/array.c:156
ijl_uncompress_argnames at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/ircode.c:1102
ijl_uncompress_ir at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/ircode.c:962
_uncompressed_ir at ./reflection.jl:1320 [inlined]
retrieve_code_info at ./compiler/utilities.jl:143 [inlined]
InferenceState at ./compiler/inferencestate.jl:494
InferenceState at ./compiler/inferencestate.jl:499 [inlined]
typeinf_ext at ./compiler/typeinfer.jl:1043
typeinf_ext_toplevel at ./compiler/typeinfer.jl:1083
typeinf_ext_toplevel at ./compiler/typeinfer.jl:1079
jfptr_typeinf_ext_toplevel_38885.1 at /home/benjamin/.julia/juliaup/julia-1.11.0-beta1+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
jl_apply at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/julia.h:2154 [inlined]
jl_type_infer at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/gf.c:390
jl_generate_fptr_impl at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/jitlayers.cpp:511
jl_compile_method_internal at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/gf.c:2534 [inlined]
jl_compile_method_internal at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/gf.c:2421
_jl_invoke at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/gf.c:2938 [inlined]
ijl_apply_generic at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/gf.c:3123
#_read#55 at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:381
_read at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:375 [inlined]
#_read!#54 at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:365
_read! at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:341 [inlined]
#read#30 at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:295
read at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:289 [inlined]
#28 at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:283 [inlined]
#FITS#4 at /home/benjamin/.julia/packages/FITSIO/ggf1s/src/FITSIO.jl:209
FITS at /home/benjamin/.julia/packages/FITSIO/ggf1s/src/FITSIO.jl:206 [inlined]
#read#27 at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:281 [inlined]
read at /home/benjamin/.julia/packages/OIFITS/xLmZw/src/io.jl:281
unknown function (ip: 0x7f4300cd07ed)
jl_apply at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/julia.h:2154 [inlined]
do_call at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/interpreter.c:126
eval_value at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/interpreter.c:223
eval_stmt_value at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/interpreter.c:174 [inlined]
eval_body at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/interpreter.c:659
jl_interpret_toplevel_thunk at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/interpreter.c:817
jl_toplevel_eval_flex at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/toplevel.c:943
jl_toplevel_eval_flex at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/toplevel.c:886
ijl_toplevel_eval_in at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/toplevel.c:994
eval at ./boot.jl:428 [inlined]
eval_user_input at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:222
repl_backend_loop at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:319
#start_repl_backend#59 at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:304
start_repl_backend at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:301
#run_repl#72 at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:460
run_repl at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/usr/share/julia/stdlib/v1.11/REPL/src/REPL.jl:446
jfptr_run_repl_12489 at /home/benjamin/.julia/juliaup/julia-1.11.0-beta1+0.x64.linux.gnu/share/julia/compiled/v1.11/REPL/u0gqU_4EB71.so (unknown line)
#1131 at ./client.jl:441
jfptr_YY.1131_17228 at /home/benjamin/.julia/juliaup/julia-1.11.0-beta1+0.x64.linux.gnu/share/julia/compiled/v1.11/REPL/u0gqU_4EB71.so (unknown line)
jl_apply at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/julia.h:2154 [inlined]
jl_f__call_latest at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/builtins.c:875
#invokelatest#2 at ./essentials.jl:1030 [inlined]
invokelatest at ./essentials.jl:1027 [inlined]
run_main_repl at ./client.jl:425
repl_main at ./client.jl:562 [inlined]
_start at ./client.jl:536
jfptr__start_70792.1 at /home/benjamin/.julia/juliaup/julia-1.11.0-beta1+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
jl_apply at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/julia.h:2154 [inlined]
true_main at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/jlapi.c:900
jl_repl_entrypoint at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/src/jlapi.c:1059
main at /cache/build/builder-amdci5-5/julialang/julia-release-1-dot-11/cli/loader_exe.c:58
unknown function (ip: 0x7f4358e03d8f)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
Allocations: 5729772 (Pool: 5729597; Big: 175); GC: 6
Segmentation fault
Keyword conversion error (occurs in Windows and Linux). Not always "OI_REVN", have also seen other keywords throw the same error 
benjamin@Setterholm:~$ julia +beta
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.11.0-beta1 (2024-04-10)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using OIFITS

julia> read(OIDataSet, joinpath(dirname(pathof(OIFITS)), "../test", "contest-2008-binary.oifits"))
ERROR: FITS keyword "OI_REVN" of type String cannot be converted to type Int64
Stacktrace:
  [1] error(::String, ::String, ::String, ::Type, ::String, ::Type)
    @ Base ./error.jl:44
  [2] _convert_keyword(::Type{Int64}, key::String, val::String)
    @ OIFITS ~/.julia/packages/OIFITS/xLmZw/src/io.jl:204
  [3] read_keyword(T::Type{Int64}, hdu::FITSIO.TableHDU, key::String, def::OIFITS.Unspecified)
    @ OIFITS ~/.julia/packages/OIFITS/xLmZw/src/io.jl:186
  [4] read_keyword
    @ ~/.julia/packages/OIFITS/xLmZw/src/io.jl:184 [inlined]
  [5] _read_revn
    @ ~/.julia/packages/OIFITS/xLmZw/src/io.jl:444 [inlined]
  [6] _read(T::Type{OI_T3}, hdu::FITSIO.TableHDU; hack_revn::UndefInitializer)
    @ OIFITS ~/.julia/packages/OIFITS/xLmZw/src/io.jl:377
  [7] _read
    @ ~/.julia/packages/OIFITS/xLmZw/src/io.jl:375 [inlined]
  [8] _read!(ds::OIDataSet, hdu::FITSIO.TableHDU, pass::Int64; kwds::@Kwargs{})
    @ OIFITS ~/.julia/packages/OIFITS/xLmZw/src/io.jl:365
  [9] _read!
    @ ~/.julia/packages/OIFITS/xLmZw/src/io.jl:341 [inlined]
 [10] read(::Type{OIDataSet}, f::FITSIO.FITS; kwds::@Kwargs{})
    @ OIFITS ~/.julia/packages/OIFITS/xLmZw/src/io.jl:295
 [11] read
    @ ~/.julia/packages/OIFITS/xLmZw/src/io.jl:289 [inlined]
 [12] #28
    @ ~/.julia/packages/OIFITS/xLmZw/src/io.jl:283 [inlined]
 [13] FITSIO.FITS(::OIFITS.var"#28#29"{@Kwargs{}}, ::String, ::Vararg{String}; kwargs::@Kwargs{})
    @ FITSIO ~/.julia/packages/FITSIO/ggf1s/src/FITSIO.jl:209
 [14] FITS
    @ ~/.julia/packages/FITSIO/ggf1s/src/FITSIO.jl:206 [inlined]
 [15] read(::Type{OIDataSet}, filename::String)
    @ OIFITS ~/.julia/packages/OIFITS/xLmZw/src/io.jl:281
 [16] top-level scope
    @ REPL[2]:1

julia>
Partial error but then recovers and reads the file (only seen in Windows a couple times, but perhaps I haven't tried enough times in Linux) 
PS C:\Users\bense> julia +beta
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.11.0-beta1 (2024-04-10)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using OIFITS

julia> read(OIDataSet, joinpath(dirname(pathof(OIFITS)), "../test", "contest-2008-binary.oifits"))
Internal error: during type inference of
_read_keyword!(OIFITS.OI_ARRAY, Base.Val{:arrayy}, FITSIO.TableHDU, OIFITS.Formats.FieldDefinition)
Encountered unexpected error in runtime:
ReadOnlyMemoryError()
jl_gc_pool_alloc_inner at C:/workdir/src\gc.c:1336
jl_gc_pool_alloc_noinline at C:/workdir/src\gc.c:1386 [inlined]
jl_gc_alloc_ at C:/workdir/src\julia_internal.h:521 [inlined]
jl_gc_alloc at C:/workdir/src\gc.c:3946
_new_genericmemory_ at C:/workdir/src\genericmemory.c:56 [inlined]
jl_alloc_genericmemory at C:/workdir/src\genericmemory.c:99
GenericMemory at .\boot.jl:514 [inlined]
array_new_memory at .\array.jl:1052 [inlined]
#132 at .\array.jl:1118
_growend! at .\array.jl:1105 [inlined]
push! at .\array.jl:1250 [inlined]
compute_basic_blocks at .\compiler/ssair\ir.jl:138
InferenceState at .\compiler\inferencestate.jl:288
InferenceState at .\compiler\inferencestate.jl:497
InferenceState at .\compiler\inferencestate.jl:499 [inlined]
typeinf_ext at .\compiler\typeinfer.jl:1043
typeinf_ext_toplevel at .\compiler\typeinfer.jl:1083
typeinf_ext_toplevel at .\compiler\typeinfer.jl:1079
jfptr_typeinf_ext_toplevel_39813.1 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\lib\julia\sys.dll (unknown line)
_jl_invoke at C:/workdir/src\gf.c:2946 [inlined]
ijl_apply_generic at C:/workdir/src\gf.c:3123 [inlined]
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
jl_type_infer at C:/workdir/src\gf.c:390
jl_generate_fptr_impl at C:/workdir/src\jitlayers.cpp:511
jl_compile_method_internal at C:/workdir/src\gf.c:2534
jl_compile_method_internal at C:/workdir/src\gf.c:2944 [inlined]
_jl_invoke at C:/workdir/src\gf.c:2938 [inlined]
ijl_apply_generic at C:/workdir/src\gf.c:3123
#_read#55 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:381
_read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:375 [inlined]
#_read!#54 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:352
_read! at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:341 [inlined]
#read#30 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:295
read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:289 [inlined]
#28 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:283 [inlined]
#FITS#4 at C:\Users\bense\.julia\packages\FITSIO\ggf1s\src\FITSIO.jl:209
FITS at C:\Users\bense\.julia\packages\FITSIO\ggf1s\src\FITSIO.jl:206 [inlined]
#read#27 at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:281 [inlined]
read at C:\Users\bense\.julia\packages\OIFITS\xLmZw\src\io.jl:281
unknown function (ip: 0000018d7b491459)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
do_call at C:/workdir/src\interpreter.c:126
eval_value at C:/workdir/src\interpreter.c:223
eval_stmt_value at C:/workdir/src\interpreter.c:174 [inlined]
eval_body at C:/workdir/src\interpreter.c:677
jl_interpret_toplevel_thunk at C:/workdir/src\interpreter.c:817
top-level scope at REPL[2]:1
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:943
jl_toplevel_eval_flex at C:/workdir/src\toplevel.c:886
ijl_toplevel_eval at C:/workdir/src\toplevel.c:952 [inlined]
ijl_toplevel_eval_in at C:/workdir/src\toplevel.c:994
eval at .\boot.jl:428 [inlined]
eval_user_input at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:222
repl_backend_loop at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:319
#start_repl_backend#59 at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:304
start_repl_backend at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:301
#run_repl#72 at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:460
run_repl at C:\workdir\usr\share\julia\stdlib\v1.11\REPL\src\REPL.jl:446
jfptr_run_repl_12691 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_e6ieL.dll (unknown line)
#1131 at .\client.jl:441
jfptr_YY.1131_17495 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\share\julia\compiled\v1.11\REPL\u0gqU_e6ieL.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
jl_f__call_latest at C:/workdir/src\builtins.c:875
#invokelatest#2 at .\essentials.jl:1030 [inlined]
invokelatest at .\essentials.jl:1027 [inlined]
run_main_repl at .\client.jl:425
repl_main at .\client.jl:562 [inlined]
_start at .\client.jl:536
jfptr__start_72187.1 at C:\Users\bense\.julia\juliaup\julia-1.11.0-beta1+0.x64.w64.mingw32\lib\julia\sys.dll (unknown line)
jl_apply at C:/workdir/src\julia.h:2154 [inlined]
true_main at C:/workdir/src\jlapi.c:900
jl_repl_entrypoint at C:/workdir/src\jlapi.c:1059
mainCRTStartup at C:/workdir/cli\loader_exe.c:58
BaseThreadInitThunk at C:\Windows\System32\KERNEL32.DLL (unknown line)
RtlUserThreadStart at C:\Windows\SYSTEM32\ntdll.dll (unknown line)
OIDataSet(OI_TARGET(1, OITargetEntry[OITargetEntry(1, "Gam_Vic", 217.8125, 45.10547222243415, 2000.0, -1.0, -1.0, -1.0, "LSR", "OPTICAL", -1.0, -1.0, -1.0, -1.0, -1.0, -1.0, "Unknown", "")]), Dict("GAM_VIC" => 1), Dict(0 => 1), OI_ARRAY[OI_ARRAY(1, "CHARA", "GEOCENTRIC", 0.0, 0.0, 0.0, ["S1", "S2", "E1", "W1", "W2", "E2"], ["S1", "S2", "E1", "W1", "W2", "E2"], [0, 1, 2, 3, 4, 5], [1.0, 1.0, 1.0, 1.0, 1.0, 1.0], [0.0 3.5604111211706813 … -8.398458783516354 134.58774844342844; 0.0 18.90162711699635 … 131.11332979148256 102.80926738618152; 0.0 28.12858010440001 … 165.08713355612696 221.44410750302728], #undef, #undef)], Dict("CHARA" => 1), OI_WAVELENGTH[OI_WAVELENGTH(1, "MIRC_H", [1.500000053056283e-6, 1.5357143183791777e-6, 1.5714285837020725e-6, 1.6071428490249673e-6, 1.6428572280346998e-6, 1.6785714933575946e-6, 1.7142857586804894e-6, 1.7500000240033842e-6], [3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8])], Dict("MIRC_H" => 1), OI_CORR[], Dict{String, Int64}(), OI_VIS[], OI_VIS2[OI_VIS2(OI_ARRAY(1, "CHARA", "GEOCENTRIC", 0.0, 0.0, 0.0, ["S1", "S2", "E1", "W1", "W2", "E2"], ["S1", "S2", "E1", "W1", "W2", "E2"], [0, 1, 2, 3, 4, 5], [1.0, 1.0, 1.0, 1.0, 1.0, 1.0], [0.0 3.5604111211706813 … -8.398458783516354 134.58774844342844; 0.0 18.90162711699635 … 131.11332979148256 102.80926738618152; 0.0 28.12858010440001 … 165.08713355612696 221.44410750302728], #undef, #undef), OI_WAVELENGTH(1, "MIRC_H", [1.500000053056283e-6, 1.5357143183791777e-6, 1.5714285837020725e-6, 1.6071428490249673e-6, 1.6428572280346998e-6, 1.6785714933575946e-6, 1.7142857586804894e-6, 1.7500000240033842e-6], [3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8]), #undef, 1, "2007-05-11", "CHARA", "MIRC_H", #undef, [1, 1, 1, 1, 1, 1, 1, 1, 1, 1  …  1, 1, 1, 1, 1, 1, 1, 1, 1, 1], [18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754, 18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754  …  18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754, 18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754], [54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731, 54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731  …  54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731, 54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0  …  0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.580481231212616 0.6430022716522217 … 0.31414487957954407 0.314627468585968; 0.5891797542572021 0.5222818851470947 … 0.4044651389122009 0.5017197132110596; … ; 0.6363487839698792 0.6107855439186096 … 0.3833366632461548 0.6245711445808411; 0.6497811675071716 0.6829720735549927 … 0.44121289253234863 0.5106431245803833], [0.09153756499290466 0.09166057407855988 … 0.061158545315265656 0.05317765846848488; 0.09177263081073761 0.09211093932390213 … 0.06338495761156082 0.059276480227708817; … ; 0.09441637992858887 0.09554733335971832 … 0.06014004349708557 0.0723857432603836; 0.09514439851045609 0.09638620913028717 … 0.058257680386304855 0.07175277173519135], #undef, [4.9372687405907705, 1.9602080692952741, -1.06538358474518, -4.0646007358461995, -6.963183934713585, 200.449085893421, 184.99082841627353, 164.9525586248336, 140.83036491677507, 113.22150341929698  …  220.08645184356797, 234.81137338777222, 243.7228236718972, 246.60017210558712, 243.3721766614481, 140.5249073295382, 144.85830110260895, 145.60528601190316, 142.74736442147264, 136.35529735745936], [33.02223480224647, 33.40784602769317, 33.45787220132252, 33.17107440760253, 32.55455364827101, 234.79049371633866, 256.33894712759195, 275.90292748667315, 292.9980806778767, 307.20113736198914  …  -44.47161174173653, -19.040035431240646, 7.712959421964857, 35.12504191794953, 62.51749956356729, 12.350303616044002, 28.304973962698984, 44.54366891671749, 60.66436223456188, 76.26791182424219], [0 0 … 4 4; 1 1 … 5 5], Bool[0 0 … 0 0; 0 0 … 0 0; … ; 0 0 … 0 0; 0 0 … 0 0])], OI_T3[OI_T3(OI_ARRAY(1, "CHARA", "GEOCENTRIC", 0.0, 0.0, 0.0, ["S1", "S2", "E1", "W1", "W2", "E2"], ["S1", "S2", "E1", "W1", "W2", "E2"], [0, 1, 2, 3, 4, 5], [1.0, 1.0, 1.0, 1.0, 1.0, 1.0], [0.0 3.5604111211706813 … -8.398458783516354 134.58774844342844; 0.0 18.90162711699635 … 131.11332979148256 102.80926738618152; 0.0 28.12858010440001 … 165.08713355612696 221.44410750302728], #undef, #undef), OI_WAVELENGTH(1, "MIRC_H", [1.500000053056283e-6, 1.5357143183791777e-6, 1.5714285837020725e-6, 1.6071428490249673e-6, 1.6428572280346998e-6, 1.6785714933575946e-6, 1.7142857586804894e-6, 1.7500000240033842e-6], [3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8]), #undef, 1, "2007-05-11", "CHARA", "MIRC_H", #undef, [1, 1, 1, 1, 1, 1, 1, 1, 1, 1  …  1, 1, 1, 1, 1, 1, 1, 1, 1, 1], [18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754, 18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754  …  18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754, 18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754], [54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731, 54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731  …  54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731, 54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0  …  0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0032962155528366566 0.0019402354955673218 … 0.06162061169743538 0.06678305566310883; 0.006330485921353102 0.0015058262506499887 … 0.07068482041358948 0.07804796099662781; … ; 0.015620619058609009 0.010495539754629135 … 0.13922810554504395 0.10449503362178802; 0.030634859576821327 0.02169905975461006 … 0.14026804268360138 0.11292415112257004], [0.000527476891875267 0.000327107438351959 … 0.010593833401799202 0.018193857744336128; 0.0010861565824598074 0.0003513169358484447 … 0.013225636444985867 0.019187981262803078; … ; 0.004769473802298307 0.002115425420925021 … 0.029717693105340004 0.021867122501134872; 0.0064000943675637245 0.004012386314570904 … 0.03229439631104469 0.023973645642399788], #undef, [-60.880088806152344 69.42391967773438 … 1.0774458646774292 -13.021782875061035; -74.06024169921875 -14.069182395935059 … 10.493714332580566 -15.199806213378906; … ; 34.96256637573242 13.334046363830566 … 15.582088470458984 9.19375228881836; 31.985761642456055 30.03437614440918 … 11.456774711608887 16.044401168823242], [2.8616552352905273 4.579619884490967 … 0.5137027502059937 0.46610164642333984; 1.5470558404922485 4.254592418670654 … 0.49100813269615173 0.4626697897911072; … ; 0.6537280082702637 0.9781947135925293 … 0.44043442606925964 0.45497748255729675; 0.5886764526367188 0.7020854353904724 … 0.4372042417526245 0.4501386284828186], #undef, [4.9372687405907705, 1.9602080692952741, -1.06538358474518, -4.0646007358461995, -6.963183934713585, 4.9372687405907705, 1.9602080692952741, -1.06538358474518, -4.0646007358461995, -6.963183934713585  …  -199.20765910089546, -204.3723301515476, -204.4771410952905, -199.51949104033227, -189.6221294723055, 79.56154451402978, 89.95307228516327, 98.11753765999403, 103.85280768411447, 107.01687930398873], [33.02223480224647, 33.40784602769317, 33.45787220132252, 33.17107440760253, 32.55455364827101, 33.02223480224647, 33.40784602769317, 33.45787220132252, 33.17107440760253, 32.55455364827101  …  -25.203516596691266, -47.766111370238434, -70.62330290892083, -93.20920873746857, -114.96461061854029, -56.82191535778054, -47.345009393939634, -36.83070949475263, -25.539320316612333, -13.750412260674896], [195.51181715283025, 183.03062034697825, 166.01794220957882, 144.8949656526213, 120.18468735401056, -83.25738646209498, -111.29478208973265, -136.57673654570573, -158.47733307182548, -176.45432142228367  …  140.5249073295382, 144.85830110260895, 145.60528601190316, 142.74736442147264, 136.35529735745936, 140.5249073295382, 144.85830110260895, 145.60528601190316, 142.74736442147264, 136.35529735745936], [201.76825891409217, 222.9311010998988, 242.4450552853506, 259.8270062702742, 274.6465837137181, 233.38665767518148, 222.5099991236, 208.65246187118242, 192.15711784941794, 173.43238535585274  …  12.350303616044002, 28.304973962698984, 44.54366891671749, 60.66436223456188, 76.26791182424219, 12.350303616044002, 28.304973962698984, 44.54366891671749, 60.66436223456188, 76.26791182424219], [0 0 … 3 3; 1 1 … 4 4; 2 2 … 5 5], Bool[0 0 … 0 0; 0 0 … 0 0; … ; 0 0 … 0 0; 0 0 … 0 0])], OI_FLUX[], OI_INSPOL[])

julia>
Sometimes, the file is read just fine with no issues (both in Windows and Linux) 
benjamin@Setterholm:~$ julia +beta
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.11.0-beta1 (2024-04-10)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using OIFITS

julia> read(OIDataSet, joinpath(dirname(pathof(OIFITS)), "../test", "contest-2008-binary.oifits"))
OIDataSet(OI_TARGET(1, OITargetEntry[OITargetEntry(1, "Gam_Vic", 217.8125, 45.10547222243415, 2000.0, -1.0, -1.0, -1.0, "LSR", "OPTICAL", -1.0, -1.0, -1.0, -1.0, -1.0, -1.0, "Unknown", "")]), Dict("GAM_VIC" => 1), Dict(0 => 1), OI_ARRAY[OI_ARRAY(1, "CHARA", "GEOCENTRIC", 0.0, 0.0, 0.0, ["S1", "S2", "E1", "W1", "W2", "E2"], ["S1", "S2", "E1", "W1", "W2", "E2"], [0, 1, 2, 3, 4, 5], [1.0, 1.0, 1.0, 1.0, 1.0, 1.0], [0.0 3.5604111211706813 … -8.398458783516354 134.58774844342844; 0.0 18.90162711699635 … 131.11332979148256 102.80926738618152; 0.0 28.12858010440001 … 165.08713355612696 221.44410750302728], #undef, #undef)], Dict("CHARA" => 1), OI_WAVELENGTH[OI_WAVELENGTH(1, "MIRC_H", [1.500000053056283e-6, 1.5357143183791777e-6, 1.5714285837020725e-6, 1.6071428490249673e-6, 1.6428572280346998e-6, 1.6785714933575946e-6, 1.7142857586804894e-6, 1.7500000240033842e-6], [3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8])], Dict("MIRC_H" => 1), OI_CORR[], Dict{String, Int64}(), OI_VIS[], OI_VIS2[OI_VIS2(OI_ARRAY(1, "CHARA", "GEOCENTRIC", 0.0, 0.0, 0.0, ["S1", "S2", "E1", "W1", "W2", "E2"], ["S1", "S2", "E1", "W1", "W2", "E2"], [0, 1, 2, 3, 4, 5], [1.0, 1.0, 1.0, 1.0, 1.0, 1.0], [0.0 3.5604111211706813 … -8.398458783516354 134.58774844342844; 0.0 18.90162711699635 … 131.11332979148256 102.80926738618152; 0.0 28.12858010440001 … 165.08713355612696 221.44410750302728], #undef, #undef), OI_WAVELENGTH(1, "MIRC_H", [1.500000053056283e-6, 1.5357143183791777e-6, 1.5714285837020725e-6, 1.6071428490249673e-6, 1.6428572280346998e-6, 1.6785714933575946e-6, 1.7142857586804894e-6, 1.7500000240033842e-6], [3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8]), #undef, 1, "2007-05-11", "CHARA", "MIRC_H", #undef, [1, 1, 1, 1, 1, 1, 1, 1, 1, 1  …  1, 1, 1, 1, 1, 1, 1, 1, 1, 1], [18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754, 18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754  …  18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754, 18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754], [54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731, 54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731  …  54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731, 54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0  …  0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.580481231212616 0.6430022716522217 … 0.31414487957954407 0.314627468585968; 0.5891797542572021 0.5222818851470947 … 0.4044651389122009 0.5017197132110596; … ; 0.6363487839698792 0.6107855439186096 … 0.3833366632461548 0.6245711445808411; 0.6497811675071716 0.6829720735549927 … 0.44121289253234863 0.5106431245803833], [0.09153756499290466 0.09166057407855988 … 0.061158545315265656 0.05317765846848488; 0.09177263081073761 0.09211093932390213 … 0.06338495761156082 0.059276480227708817; … ; 0.09441637992858887 0.09554733335971832 … 0.06014004349708557 0.0723857432603836; 0.09514439851045609 0.09638620913028717 … 0.058257680386304855 0.07175277173519135], #undef, [4.9372687405907705, 1.9602080692952741, -1.06538358474518, -4.0646007358461995, -6.963183934713585, 200.449085893421, 184.99082841627353, 164.9525586248336, 140.83036491677507, 113.22150341929698  …  220.08645184356797, 234.81137338777222, 243.7228236718972, 246.60017210558712, 243.3721766614481, 140.5249073295382, 144.85830110260895, 145.60528601190316, 142.74736442147264, 136.35529735745936], [33.02223480224647, 33.40784602769317, 33.45787220132252, 33.17107440760253, 32.55455364827101, 234.79049371633866, 256.33894712759195, 275.90292748667315, 292.9980806778767, 307.20113736198914  …  -44.47161174173653, -19.040035431240646, 7.712959421964857, 35.12504191794953, 62.51749956356729, 12.350303616044002, 28.304973962698984, 44.54366891671749, 60.66436223456188, 76.26791182424219], [0 0 … 4 4; 1 1 … 5 5], Bool[0 0 … 0 0; 0 0 … 0 0; … ; 0 0 … 0 0; 0 0 … 0 0])], OI_T3[OI_T3(OI_ARRAY(1, "CHARA", "GEOCENTRIC", 0.0, 0.0, 0.0, ["S1", "S2", "E1", "W1", "W2", "E2"], ["S1", "S2", "E1", "W1", "W2", "E2"], [0, 1, 2, 3, 4, 5], [1.0, 1.0, 1.0, 1.0, 1.0, 1.0], [0.0 3.5604111211706813 … -8.398458783516354 134.58774844342844; 0.0 18.90162711699635 … 131.11332979148256 102.80926738618152; 0.0 28.12858010440001 … 165.08713355612696 221.44410750302728], #undef, #undef), OI_WAVELENGTH(1, "MIRC_H", [1.500000053056283e-6, 1.5357143183791777e-6, 1.5714285837020725e-6, 1.6071428490249673e-6, 1.6428572280346998e-6, 1.6785714933575946e-6, 1.7142857586804894e-6, 1.7500000240033842e-6], [3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8, 3.571426532289479e-8]), #undef, 1, "2007-05-11", "CHARA", "MIRC_H", #undef, [1, 1, 1, 1, 1, 1, 1, 1, 1, 1  …  1, 1, 1, 1, 1, 1, 1, 1, 1, 1], [18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754, 18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754  …  18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754, 18000.0, 20159.999656677246, 22319.999313354492, 24480.000686645508, 26640.000343322754], [54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731, 54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731  …  54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731, 54231.20833333349, 54231.233333329204, 54231.258333325386, 54231.283333341125, 54231.30833333731], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0  …  0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0032962155528366566 0.0019402354955673218 … 0.06162061169743538 0.06678305566310883; 0.006330485921353102 0.0015058262506499887 … 0.07068482041358948 0.07804796099662781; … ; 0.015620619058609009 0.010495539754629135 … 0.13922810554504395 0.10449503362178802; 0.030634859576821327 0.02169905975461006 … 0.14026804268360138 0.11292415112257004], [0.000527476891875267 0.000327107438351959 … 0.010593833401799202 0.018193857744336128; 0.0010861565824598074 0.0003513169358484447 … 0.013225636444985867 0.019187981262803078; … ; 0.004769473802298307 0.002115425420925021 … 0.029717693105340004 0.021867122501134872; 0.0064000943675637245 0.004012386314570904 … 0.03229439631104469 0.023973645642399788], #undef, [-60.880088806152344 69.42391967773438 … 1.0774458646774292 -13.021782875061035; -74.06024169921875 -14.069182395935059 … 10.493714332580566 -15.199806213378906; … ; 34.96256637573242 13.334046363830566 … 15.582088470458984 9.19375228881836; 31.985761642456055 30.03437614440918 … 11.456774711608887 16.044401168823242], [2.8616552352905273 4.579619884490967 … 0.5137027502059937 0.46610164642333984; 1.5470558404922485 4.254592418670654 … 0.49100813269615173 0.4626697897911072; … ; 0.6537280082702637 0.9781947135925293 … 0.44043442606925964 0.45497748255729675; 0.5886764526367188 0.7020854353904724 … 0.4372042417526245 0.4501386284828186], #undef, [4.9372687405907705, 1.9602080692952741, -1.06538358474518, -4.0646007358461995, -6.963183934713585, 4.9372687405907705, 1.9602080692952741, -1.06538358474518, -4.0646007358461995, -6.963183934713585  …  -199.20765910089546, -204.3723301515476, -204.4771410952905, -199.51949104033227, -189.6221294723055, 79.56154451402978, 89.95307228516327, 98.11753765999403, 103.85280768411447, 107.01687930398873], [33.02223480224647, 33.40784602769317, 33.45787220132252, 33.17107440760253, 32.55455364827101, 33.02223480224647, 33.40784602769317, 33.45787220132252, 33.17107440760253, 32.55455364827101  …  -25.203516596691266, -47.766111370238434, -70.62330290892083, -93.20920873746857, -114.96461061854029, -56.82191535778054, -47.345009393939634, -36.83070949475263, -25.539320316612333, -13.750412260674896], [195.51181715283025, 183.03062034697825, 166.01794220957882, 144.8949656526213, 120.18468735401056, -83.25738646209498, -111.29478208973265, -136.57673654570573, -158.47733307182548, -176.45432142228367  …  140.5249073295382, 144.85830110260895, 145.60528601190316, 142.74736442147264, 136.35529735745936, 140.5249073295382, 144.85830110260895, 145.60528601190316, 142.74736442147264, 136.35529735745936], [201.76825891409217, 222.9311010998988, 242.4450552853506, 259.8270062702742, 274.6465837137181, 233.38665767518148, 222.5099991236, 208.65246187118242, 192.15711784941794, 173.43238535585274  …  12.350303616044002, 28.304973962698984, 44.54366891671749, 60.66436223456188, 76.26791182424219, 12.350303616044002, 28.304973962698984, 44.54366891671749, 60.66436223456188, 76.26791182424219], [0 0 … 3 3; 1 1 … 4 4; 2 2 … 5 5], Bool[0 0 … 0 0; 0 0 … 0 0; … ; 0 0 … 0 0; 0 0 … 0 0])], OI_FLUX[], OI_INSPOL[])

julia>

Probably related: JuliaLang/julia#52951
@emmt
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emmt commented Apr 11, 2024

Which version of OIFITS.jl are you using ? The master version?

@bensetterholm
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I was using the released version in the General Registry, but I just now installed the master branch version directly from GitHub on Windows and I get the same behavior.

I ran the MWE 4 times:

  • the first time I got the String conversion bug
  • the second and third time the file read properly
  • the fourth time I get the full Julia crash

So it seems that even with master, I still have the same issue as before.

@bensetterholm
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bensetterholm commented Apr 11, 2024 •
edited
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Maybe this has something to do with the fact that the fundamental underlying structure of Arrays in Julia 1.11 has changed? Does OIFITS (or maybe FITSIO) interface with Arrays at a lower-level than it is "supposed to"?

See: JuliaLang/julia#51319 - listed at the very top of the Julia 1.11 Release News

@emmt
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emmt commented Apr 18, 2024

To solve this kind of issues (and others), I plan to use EasyFITS.jl instead of FITSIO.jl. I will start a new branch with these changes as soon as possible..

@emmt
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emmt commented Apr 18, 2024

BTW I also had this problem with Julia 1.11.0-beta1 although I can correctly open the file with FITSIO...

@bensetterholm
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Great, thanks. I will continue using Julia 1.10 for the time being then.

Yes, I also did not see a crash in FITSIO during regular usage under Julia 1.11, so it is possible that the problem was mis-diagnosed. (However, when running ]test FITSIO, there are some errors on my machine)

@emmt
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emmt commented May 1, 2024

I have tried to read a file with OIFITS in Julia 1.11.0-beta1 with Julia debugger but it takes too long and too may memory. I had to quit as it freezed my computer.

Since I do not have my hands in FITSIO I would rather prefer to switch to EasyFITS as said above. I have a preliminary version that can load the 2004 Interferometric Beauty Contest file (and some others) without crashing. I am currently porting the writing of OIFITS file part....

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emmt commented May 2, 2024

As of 6546ff0, all tests passed with EasyFITS to deal with FITS files up to Julia version 1.11.0-beta1. This will probably be the 1.1.0 version of OIFITS. Beware that this rely on two not yet official packages: EasyFITS and FITSHeaders. You will have to install them by hand (first FITSHeaders, then EasyFITS). FITSHeaders is in the way to be officially registered and, once this is done, I will trigger the registration of EasyFITS. Before finally releasing an official new version of OIFITS. In the mean time, you may give a try to this new version even though you still use Julia 1.10. There are just a few changes for dealing with OI-FITS files:

  1. use/import EasyFITS instead of FITSIO (although the two can co-exist);
  2. call FitsFile(...) or openfits(...) instead of FITS(...) to open a FITS file.

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Thanks, I'll give it a try!

@bensetterholm
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I am not running into any issues with OIFITS after playing around with this for a little bit. Thank you very much for all of your work! I am very impressed that you replaced the entire underlying library without modifications to the OIFITS API. Fantastic! I will mark this issue as closed.

P.S. I know that FITSHeaders will soon be added to the Julia General registry, but could you also add it to your personal registry in the meantime? Thanks!

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@emmt @bensetterholm