From 8c6e13f7bcab2048ffa0476ca101e2ea36785bab Mon Sep 17 00:00:00 2001 From: pratikunterwegs Date: Mon, 11 Mar 2024 15:27:23 +0000 Subject: [PATCH] Add EpiEstim comment, correct R description --- vignettes/modelling_scenarios.Rmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/vignettes/modelling_scenarios.Rmd b/vignettes/modelling_scenarios.Rmd index 9cfd5ae4..d409b3ff 100644 --- a/vignettes/modelling_scenarios.Rmd +++ b/vignettes/modelling_scenarios.Rmd @@ -46,7 +46,7 @@ The Ebola virus disease model included in the package is expected to receive thi ```{r setup} # epi modelling library(epidemics) -library(EpiEstim) +library(EpiEstim) # for Rt estimation # data manipulation packages library(dplyr) @@ -149,7 +149,7 @@ plot(output_R, "R") Generate 100 samples of $R$, and convert to the transmissibility parameter (often denoted $\beta$) by dividing by the infectious period of 7 days. -Since _EpiEstim_ estimates $Rt$, the real-time $R$, we shall use the mean of the estimates over the time period, and the mean of the standard deviation, as parameters for a distribution from which to draw $R$ samples for the model. +Since _EpiEstim_ estimates $Rt$, the instantaneous $R$, we shall use the mean of the estimates over the time period, and the mean of the standard deviation, as parameters for a distribution from which to draw $R$ samples for the model. ```{r} # get mean mean and sd over time