README.md

GraphstatsR

A shiny app allowing users to generate advanced interactive graphics and statistical tests.

Online instance here: https://graphstatsr.sk8.inrae.fr/

Prerequisites

R4.3.3 or upper is required (https://pbil.univ-lyon1.fr/CRAN/bin/)

• Linux

sudo apt-get install r-base git libssl-dev cmake libcurl4-openssl-dev libgmp3-dev libmpfr-dev zlib1g-dev

• Windows

Rtools and git are required.

Installation

• In R console: You can install the released version of graphstats from this repository with:

install.packages("remotes")
remotes::install_gitlab(repo = "etienne.rifa/graphstats", host = "forgemia.inra.fr")

To run Shiny app in R

# To update app 
remotes::install_gitlab(repo = "etienne.rifa/graphstats", host = "forgemia.inra.fr", upgrade = FALSE)

# To run app
library(graphstatsr)
graphstatsr::run_app()

Toy dataset

Features table and metadata files are available in the dataset folder to test Graphstats. (inst/dataset in the git repo)

dir( system.file("dataset/", package = "graphstatsr") )
# "features_quanti_data.csv" "metadata_file.csv" # for Easy Stats

# "isoplot_quantification_table.csv" "isoplot_metadata.csv" # for IsoPlot