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Table of Contents

.. toctree::
   :maxdepth: 2
   :numbered:

   index.md

   code-of-conduct.md

   guidelines-expectations.md

   cloud_computing_intro.md

   shell_intro/index.md

   jetstream/boot.md

   conda_tutorial.md

   quality-and-trimming.md

   salmon-quant.md

   R_Intro_Lesson.md

   diff-ex-and-viz.md

   mapping-variant-calling.md

   bash_automation.md

   snakemake_for_automation.md

   snakemake_for_qc.md

   de-novo-genome-assembly.md

   de-novo-genome-exploration.md

   more-unix-fun.md

   github.md

   amplicon_and_metagen.md

   transcriptome-assembly-nematostella.md

   dammit_annotation.md

   sourmash.md

   RNA-seq-Analysis.md