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parameters.txt
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parameters.txt
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print_output|true
bad_score_scope|0.0
good_isub_anchors|0.98
good_isub_candidates|0.95
good_confidence|0.50
good_sim_coocurrence|0.08
min_conf_pro_map|0.80
confidence_composed_mappings1|0.8
confidence_composed_mappings2|0.7
avoid_redundant_labels|true
use_stemming|false
max_redundancy_labels|3
max_ambiguity|4
good_ambiguity|2
use_overlapping|false
min_size_overlapping|15000
output_class_mappings|true
property_matching|true
output_prop_mappings|true
instance_matching|true
output_instance_mappings|true
#only for statistics
output_instance_mapping_files|false
reason_datatypes|false
reasoner|HermiT
#reasoner|ELK
#Repair
perform_repair|true
#Global information for Downling and Gallier
glogal_info|true
timeout|25
reverse_labels=false
output_equivalences_only|false
second_chance_conflicts|true
#Ration 5
ratio_second_chance_discarded|10
use_umls_lexicon|true
allow_bioportal|false
#Number of mediating ontologies to use from BioPortal
max_mediating_ontologies|10
allow_interactivity|false
allow_multilingual|false
#false for tests
is_test_mode_multilingual|false
use_local_dict|false
call_online_translator|false
path_chinese_segmenter_dict|multilingual/dict_ictclas4j
#on-the-fly dictionaries if translation is not available in local dict or if local dict is not allowed
path_multilingual_tmp|multilingual
#path_multilingual_tmp|/home/ernesto/Documents/OAEI_OM_2015/EVAL_2015/dict_multilingual
#Local precompued disctionary if use_local_dict=true
path_multilingual_local|multilingual/local
target_lang|en
#0=Google, 1=Microsoft, >=2 -> all
translator_id|9
annotation_URI|http://www.w3.org/2000/01/rdf-schema#label
annotation_URI|http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym
annotation_URI|http://www.geneontology.org/formats/oboInOwl#hasExactSynonym
annotation_URI|http://www.geneontology.org/formats/oboInOWL#hasExactSynonym
#annotation_URI|http://www.geneontology.org/formats/oboInOWL#hasRelatedSynonym
annotation_URI|http://purl.bioontology.org/ontology/SYN#synonym
annotation_URI|http://scai.fraunhofer.de/CSEO#Synonym
annotation_URI|http://purl.obolibrary.org/obo/synonym
annotation_URI|http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#FULL_SYN
annotation_URI|http://www.ebi.ac.uk/efo/alternative_term
annotation_URI|http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Synonym
annotation_URI|http://bioontology.org/projects/ontologies/fma/fmaOwlDlComponent_2_0#Synonym
annotation_URI|http://www.geneontology.org/formats/oboInOwl#hasDefinition
annotation_URI|http://bioontology.org/projects/ontologies/birnlex#preferred_label
annotation_URI|http://bioontology.org/projects/ontologies/birnlex#synonyms
annotation_URI|http://www.w3.org/2004/02/skos/core#prefLabel
annotation_URI|http://www.w3.org/2004/02/skos/core#altLabel
annotation_URI|http://xmlns.com/foaf/0.1/name
annotation_URI|http://dbpedia.org/ontology/synonym
annotation_URI|http://dbpedia.org/property/title
annotation_URI|http://dbpedia.org/property/name
annotation_URI|https://cfpub.epa.gov/ecotox#latinName
annotation_URI|https://cfpub.epa.gov/ecotox#commonName
annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#scientific_name
annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#synonym
#annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#authority
#genbank_common_name, in_blast, includes, in-part bring ambiguity
#annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#genbank_common_name
#annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#blast_name
#annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#in-part
annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#equivalent_name
#annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#includes
annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#genbank_synonym
annotation_URI|https://www.ncbi.nlm.nih.gov/taxonomy#common_name
annotation_URI|http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#P90
annotation_URI|http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#P107
annotation_URI|http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#P108
annotation_URI|http://purl.org/sig/ont/fma/slot_synonym
annotation_URI|http://purl.org/sig/ont/fma/synonym
annotation_URI|http://purl.org/sig/ont/fma/non-English_equivalent
annotation_URI|http://purl.org/sig/ont/fma/preferred_name
#Doremus annotation
#annotation_URI|http://erlangen-crm.org/current/P3_has_note
#In case only a subset of the individuals should be matched
restrict_individual_types|false
#Categories for individuals (e.g. dbpedia category). Additional compatibility information to class types of an insstance
category_URI|http://data.doremus.org/ontology#U12_has_genre
#category_URI|http://data.doremus.org/ontology#U16_has_catalogue_statement
#Folder with available mappings between categories
path_mappings_categories|mappings/categories
##Check about and category for SPIMBENCH
#Lexical information as assertions
data_assertion_URI_Indiv|http://xmlns.com/foaf/0.1/name
data_assertion_URI_Indiv|http://dbpedia.org/ontology/synonym
data_assertion_URI_Indiv|http://dbpedia.org/property/title
data_assertion_URI_Indiv|http://dbpedia.org/property/name
data_assertion_URI_Indiv|http://dbkwik.webdatacommons.org/oldschoolrunescape/property/name
data_assertion_URI_Indiv|http://dkm.fbk.eu/index.php/BPMN2_Ontology#name
data_assertion_URI_Indiv|http://dkm.fbk.eu/index.php/BPMN2_Ontology#id
data_assertion_URI_Indiv|http://xmlns.com/foaf/0.1/isPrimaryTopicOf
data_assertion_URI_Indiv|http://www.bbc.co.uk/ontologies/creativework/title
data_assertion_URI_Indiv|http://www.bbc.co.uk/ontologies/creativework/shortTitle
data_assertion_URI_Indiv|http://www.bbc.co.uk/ontologies/creativework/description
data_assertion_URI_Indiv|http://islab.di.unimi.it/imoaei2015#name
#data_assertion_URI_Indiv|http://islab.di.unimi.it/imoaei2015#title
data_assertion_URI_Indiv|http://oaei.ontologymatching.org/2012/IIMBTBOX/name
data_assertion_URI_Indiv|http://oaei.ontologymatching.org/2012/IIMBTBOX/article
data_assertion_URI_Indiv|http://dbpedia.org/ontology/birthName
data_assertion_URI_Indiv_deep2|http://www.instancematching.org/IIMB2012/ADDONS#has_value
#data_assertion_URI_Indiv_deep2|http://dkm.fbk.eu/index.php/BPMN2_Ontology#id
object_assertion_URI_Indiv|http://www.instancematching.org/IIMB2012/ADDONS#article
object_assertion_URI_Indiv|http://www.instancematching.org/IIMB2012/ADDONS#name
object_assertion_URI_Indiv|http://www.instancematching.org/label
object_assertion_URI_Indiv|http://www.instancematching.org/curriculum
object_assertion_URI_Indiv|http://www.instancematching.org/places
object_assertion_URI_Indiv|http://www.bbc.co.uk/ontologies/curriculum/about
object_assertion_URI_Indiv|http://www.bbc.co.uk/ontologies/creativework/about
object_assertion_URI_Indiv|http://www.tomtom.com/ontologies/traces#hasPoint
#Allowed types for individuals to be matched: OAEI 2015
allowed_individual_type|http://islab.di.unimi.it/imoaei2015#Person
#SPIMBENCH
allowed_individual_type|http://www.bbc.co.uk/ontologies/creativework/BlogPost
allowed_individual_type|http://www.bbc.co.uk/ontologies/creativework/NewsItem
allowed_individual_type|http://www.bbc.co.uk/ontologies/creativework/Programme
##Process Model Matching
allowed_individual_type|http://dkm.fbk.eu/index.php/BPMN2_Ontology#task
allowed_individual_type|http://dkm.fbk.eu/index.php/BPMN2_Ontology#event
allowed_individual_type|http://owl.protege.stanford.edu#Transition
allowed_individual_type|http://owl.protege.stanford.edu#Place
#Doremus
allowed_individual_type|http://erlangen-crm.org/efrbroo/F22_Self-Contained_Expression
##
#Filter entities from these URIS: not included in Benchmark reference alignment
filter_entity|http://xmlns.com/foaf/
filter_entity|http://www.w3.org/1999/02/22-rdf-syntax-ns
filter_entity|http://purl.org/dc/elements/
filter_entity|http://mouse.owl#UNDEFINED_part_of
filter_entity|http://human.owl#UNDEFINED_part_of