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02Prerequisites.md

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Component Version Installation Documentation
Java 1.8.0 Installation Guide ICAT Documentation
MariaDB (MySQL) 5.5.56 - ICAT Documentation - Official Documentation

Chapter 02: Prerequisites

Overview

The ICAT software is written in the Java programming language with some additional tools written in Python. The application runs in a Java application server and uses a relational database to store its data. In this chapter we will be installing the open-source Java distribution provided by OpnJDK and the MariaDB database. MariaDB is the community-developed fork of Oracle's MySQL database. In the next chapter we will install the Payara application server. Payara is the open-source fork of Oracle's Glassfish application server.

All of the commands on this page should be entered as the root user so let's change to the root user:

[vagrant@localhost ~]$ sudo -i

Install Java

ICAT requires at least JDK verion 1.8. Since ICAT is distributed online as a collection of .zip files, we will also need to install unzip.

[root@localhost ~]# yum install java-1.8.0-openjdk-headless java-1.8.0-openjdk-devel unzip

Install and configure MariaDB

We install MariaDB, the MySQL java connector and some python dependencies.

[root@localhost ~]# yum install mariadb-server mariadb MySQL-python python-suds python-requests mysql-connector-java

Edit the MySQL configuration file at /etc/my.cnf. In the [mysqld] section, set the default storage engine to InnoDB.

[mysqld]
default_storage_engine = InnoDB

Start the MariaDB database, enable to run on boot then run mysql-secure-installation to make it more secure. Enter the details when prompted. In this tutorial, we assume the database root user has the password 'pw'.

[root@localhost ~]# systemctl start mariadb.service
[root@localhost ~]# systemctl enable mariadb.service
[root@localhost ~]# mysql_secure_installation

Create the database and user for ICAT to use. For this tutorial, the ICAT database is 'icatdb', the database user is 'icatdbuser' and the password is 'icatdbuserpw'.

[root@localhost ~]# mysqladmin --user=root --password=pw create icatdb
[root@localhost ~]# mysql --user=root --password=pw --execute="CREATE USER 'icatdbuser'@'localhost' IDENTIFIED BY 'icatdbuserpw';"
[root@localhost ~]# mysql --user=root --password=pw --execute="GRANT ALL PRIVILEGES ON *.* TO 'icatdbuser'@'localhost';"

Optionally install useful tools

You may like to install you favourite editor and a terminal screen multiplexer eg.

[root@localhost ~]# yum install man vim screen

Create the GlassFish user

The Payara Application Server should be run under its own account so let's make one. We use glassfish as the account name because has historically been the default in the ICAT software.

[root@localhost ~]# adduser glassfish

For the rest of this tutorial, it is assumed that you will use the glassfish user account, unless stated otherwise, so let's switch to it.

[root@localhost ~]# su - glassfish