Mock Version: 1.4.18 Mock Version: 1.4.18 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/espresso.spec'], chrootPath='/var/lib/mock/f32-build-17661380-1275156/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/espresso.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1569888000 Wrote: /builddir/build/SRPMS/espresso-4.1.0-1.fc32.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/espresso.spec'], chrootPath='/var/lib/mock/f32-build-17661380-1275156/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/espresso.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1569888000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Sew6Ao + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf espresso + /usr/bin/gzip -dc /builddir/build/SOURCES/espresso-4.1.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd espresso + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (3228.diff):' Patch #0 (3228.diff): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file CMakeLists.txt patching file doc/sphinx/conf.py.in patching file src/config/CMakeLists.txt patching file src/core/CMakeLists.txt patching file src/core/cluster_analysis/CMakeLists.txt patching file src/core/io/mpiio/CMakeLists.txt patching file src/core/io/reader/CMakeLists.txt patching file src/core/shapes/CMakeLists.txt patching file src/pdbparser/CMakeLists.txt patching file src/python/espressomd/CMakeLists.txt patching file src/script_interface/CMakeLists.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Qp4pWn + umask 022 + cd /builddir/build/BUILD + cd espresso + for mpi in mpich openmpi + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvbXBpY2gtaTM4NiIsWyJmdWxsTmFtZSJdPSJtcGkvbXBpY2gtaTM4NiIsWyJsb2FkT3JkZXIiXT0xLHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09Im1waS9tcGljaC1pMzg2Iix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxl;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + mkdir mpich + pushd mpich ~/build/BUILD/espresso/mpich ~/build/BUILD/espresso + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DWITH_PYTHON=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DWITH_TESTS=ON -DCMAKE_SKIP_RPATH=ON -DINSTALL_PYPRESSO=OFF -DCYTHON_EXECUTABLE=/usr/bin/cython -DLIBDIR=/usr/lib/mpich/lib -DPYTHON_INSTDIR=/usr/lib/python3.8/site-packages/mpich .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Config file: /builddir/build/BUILD/espresso/src/config/myconfig-default.hpp -- Performing Test result__PRETTY_FUNCTION__ -- Performing Test result__PRETTY_FUNCTION__ - Success CUDA_TOOLKIT_ROOT_DIR not found or specified -- Could NOT find CUDA (missing: CUDA_TOOLKIT_ROOT_DIR CUDA_NVCC_EXECUTABLE CUDA_INCLUDE_DIRS CUDA_CUDART_LIBRARY) (Required is at least version "9.0") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.8", minimum required is "3.3") -- Found PythonInterp: /usr/bin/python3 (found version "3.8") -- Found Cython version 0.29.13 -- Found Cython: /usr/bin/cython (Required is at least version "0.23") -- Found NumPy: /usr/lib/python3.8/site-packages/numpy/core/include (found version "1.17.2") -- NumPy ver. 1.17.2 found (include: /usr/lib/python3.8/site-packages/numpy/core/include) -- Found FFTW3: /usr/lib/libfftw3.so -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/mpich/lib/libhdf5.so;/usr/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.5", minimum required is "1.8") found components: C -- Found PY_h5py: /usr/lib/python3.8/site-packages/h5py -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Found GSL: /usr/include (found version "2.6") -- Found MPI_C: /usr/lib/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost: /usr/include (found suitable version "1.69.0", minimum required is "1.67.0") found components: mpi serialization filesystem system unit_test_framework -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE SPHINX_API_DOC_EXE) (Required is at least version "1.6.6") -- Could NOT find Git (missing: GIT_EXECUTABLE) -- The following features have been enabled: * HDF5 (required version >= 1.8), parallel -- The following OPTIONAL packages have been found: * FFTW3 * HDF5 (required version >= 1.8), parallel * PkgConfig * GSL -- The following REQUIRED packages have been found: * PythonInterp * Cython (required version >= 0.23) * NumPy * MPI * Boost (required version >= 1.67.0) -- The following OPTIONAL packages have not been found: * CUDA (required version >= 9.0) * Doxygen * Sphinx (required version >= 1.6.6) * Git -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIBDIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/espresso/mpich + /usr/bin/make -O -j1 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/espresso -B/builddir/build/BUILD/espresso/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/mpich/CMakeFiles /builddir/build/BUILD/espresso/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/pdbparser /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/pdbparser /builddir/build/BUILD/espresso/mpich/src/pdbparser/CMakeFiles/pdbparser.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/pdbparser/CMakeFiles/pdbparser.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/pdbparser/CMakeFiles/pdbparser.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/pdbparser/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/pdbparser/CMakeFiles/pdbparser.dir/depend.internal". Scanning dependencies of target pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 1%] Building CXX object src/pdbparser/CMakeFiles/pdbparser.dir/src/PdbParser.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/pdbparser && /usr/bin/c++ -Dpdbparser_EXPORTS -I/builddir/build/BUILD/espresso/src/pdbparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/pdbparser.dir/src/PdbParser.cpp.o -c /builddir/build/BUILD/espresso/src/pdbparser/src/PdbParser.cpp [ 1%] Linking CXX shared library pdbparser.so cd /builddir/build/BUILD/espresso/mpich/src/pdbparser && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbparser.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,pdbparser.so -o pdbparser.so CMakeFiles/pdbparser.dir/src/PdbParser.cpp.o make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 1%] Built target pdbparser /usr/bin/make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/generate_config_features.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/generate_config_features.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/generate_config_features.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/generate_config_features.dir/depend.internal". Scanning dependencies of target generate_config_features make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Generating config-features.hpp, config-features.cpp cd /builddir/build/BUILD/espresso/mpich/src/config && /usr/bin/python3 /builddir/build/BUILD/espresso/src/config/gen_featureconfig.py /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/mpich/src/config/config-features.hpp /builddir/build/BUILD/espresso/mpich/src/config/config-features.cpp Reading definitions from /builddir/build/BUILD/espresso/src/config/features.def... Done. Writing /builddir/build/BUILD/espresso/mpich/src/config/config-features.hpp... Done. Writing /builddir/build/BUILD/espresso/mpich/src/config/config-features.cpp... Done. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Built target generate_config_features /usr/bin/make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/CMakeFiles/myconfig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/CMakeFiles/myconfig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/CMakeFiles/myconfig.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/CMakeFiles/myconfig.dir/depend.internal". Scanning dependencies of target myconfig make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'CMakeFiles/myconfig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Built target myconfig /usr/bin/make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/check_myconfig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/check_myconfig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/check_myconfig.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/check_myconfig.dir/depend.internal". Scanning dependencies of target check_myconfig make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/config && /usr/bin/python3 /builddir/build/BUILD/espresso/src/config/check_myconfig.py /usr/bin/c++ /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/mpich/src/config/myconfig-final.hpp cmake_config.hpp make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Built target check_myconfig /usr/bin/make -f src/config/CMakeFiles/EspressoConfig.dir/build.make src/config/CMakeFiles/EspressoConfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/EspressoConfig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/EspressoConfig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/EspressoConfig.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/EspressoConfig.dir/depend.internal". Scanning dependencies of target EspressoConfig make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/config/CMakeFiles/EspressoConfig.dir/build.make src/config/CMakeFiles/EspressoConfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Building CXX object src/config/CMakeFiles/EspressoConfig.dir/config-features.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/config && /usr/bin/c++ -DEspressoConfig_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/EspressoConfig.dir/config-features.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/config/config-features.cpp [ 3%] Linking CXX shared library EspressoConfig.so cd /builddir/build/BUILD/espresso/mpich/src/config && /usr/bin/cmake -E cmake_link_script CMakeFiles/EspressoConfig.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,EspressoConfig.so -o EspressoConfig.so CMakeFiles/EspressoConfig.dir/config-features.cpp.o make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Built target EspressoConfig /usr/bin/make -f src/core/CMakeFiles/EspressoCore.dir/build.make src/core/CMakeFiles/EspressoCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core /builddir/build/BUILD/espresso/mpich/src/core/CMakeFiles/EspressoCore.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/core/CMakeFiles/EspressoCore.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/core/CMakeFiles/EspressoCore.dir/depend.internal". 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Scanning dependencies of target EspressoCore make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/CMakeFiles/EspressoCore.dir/build.make src/core/CMakeFiles/EspressoCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 4%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/accumulators.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/accumulators.cpp.o -c /builddir/build/BUILD/espresso/src/core/accumulators.cpp [ 4%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/cells.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/cells.cpp.o -c /builddir/build/BUILD/espresso/src/core/cells.cpp [ 4%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/collision.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/collision.cpp.o -c /builddir/build/BUILD/espresso/src/core/collision.cpp [ 4%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/comfixed_global.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/comfixed_global.cpp.o -c /builddir/build/BUILD/espresso/src/core/comfixed_global.cpp [ 4%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/communication.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/communication.cpp.o -c /builddir/build/BUILD/espresso/src/core/communication.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/constraints.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/constraints.cpp.o -c /builddir/build/BUILD/espresso/src/core/constraints.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/debug.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/debug.cpp.o -c /builddir/build/BUILD/espresso/src/core/debug.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/diamond.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/diamond.cpp.o -c /builddir/build/BUILD/espresso/src/core/diamond.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/espresso/src/core/domain_decomposition.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/dpd.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/dpd.cpp.o -c /builddir/build/BUILD/espresso/src/core/dpd.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/energy.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/energy.cpp.o -c /builddir/build/BUILD/espresso/src/core/energy.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/errorhandling.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/errorhandling.cpp.o -c /builddir/build/BUILD/espresso/src/core/errorhandling.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/EspressoSystemInterface.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/EspressoSystemInterface.cpp.o -c /builddir/build/BUILD/espresso/src/core/EspressoSystemInterface.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/forcecap.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/forcecap.cpp.o -c /builddir/build/BUILD/espresso/src/core/forcecap.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/forces.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/forces.cpp.o -c /builddir/build/BUILD/espresso/src/core/forces.cpp [ 9%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/galilei.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/galilei.cpp.o -c /builddir/build/BUILD/espresso/src/core/galilei.cpp [ 9%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/ghosts.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/ghosts.cpp.o -c /builddir/build/BUILD/espresso/src/core/ghosts.cpp [ 9%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/global.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/global.cpp.o -c /builddir/build/BUILD/espresso/src/core/global.cpp [ 9%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundaries.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/immersed_boundaries.cpp.o -c /builddir/build/BUILD/espresso/src/core/immersed_boundaries.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/event.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/event.cpp.o -c /builddir/build/BUILD/espresso/src/core/event.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/integrate.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/integrate.cpp.o -c /builddir/build/BUILD/espresso/src/core/integrate.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/integrators/velocity_verlet_npt.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/integrators/velocity_verlet_npt.cpp.o -c /builddir/build/BUILD/espresso/src/core/integrators/velocity_verlet_npt.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/layered.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/layered.cpp.o -c /builddir/build/BUILD/espresso/src/core/layered.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/metadynamics.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/metadynamics.cpp.o -c /builddir/build/BUILD/espresso/src/core/metadynamics.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/integrators/steepest_descent.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/integrators/steepest_descent.cpp.o -c /builddir/build/BUILD/espresso/src/core/integrators/steepest_descent.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/npt.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/npt.cpp.o -c /builddir/build/BUILD/espresso/src/core/npt.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nsquare.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nsquare.cpp.o -c /builddir/build/BUILD/espresso/src/core/nsquare.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/partCfg_global.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/partCfg_global.cpp.o -c /builddir/build/BUILD/espresso/src/core/partCfg_global.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/particle_data.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/particle_data.cpp.o -c /builddir/build/BUILD/espresso/src/core/particle_data.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/polymer.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/polymer.cpp.o -c /builddir/build/BUILD/espresso/src/core/polymer.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/polynom.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/polynom.cpp.o -c /builddir/build/BUILD/espresso/src/core/polynom.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/pressure.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/pressure.cpp.o -c /builddir/build/BUILD/espresso/src/core/pressure.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/random.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/random.cpp.o -c /builddir/build/BUILD/espresso/src/core/random.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rattle.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/rattle.cpp.o -c /builddir/build/BUILD/espresso/src/core/rattle.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/reaction_ensemble.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/reaction_ensemble.cpp.o -c /builddir/build/BUILD/espresso/src/core/reaction_ensemble.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rotate_system.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/rotate_system.cpp.o -c /builddir/build/BUILD/espresso/src/core/rotate_system.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rotation.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/rotation.cpp.o -c /builddir/build/BUILD/espresso/src/core/rotation.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeErrorCollector.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/RuntimeErrorCollector.cpp.o -c /builddir/build/BUILD/espresso/src/core/RuntimeErrorCollector.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeError.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/RuntimeError.cpp.o -c /builddir/build/BUILD/espresso/src/core/RuntimeError.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeErrorStream.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/RuntimeErrorStream.cpp.o -c /builddir/build/BUILD/espresso/src/core/RuntimeErrorStream.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/specfunc.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/specfunc.cpp.o -c /builddir/build/BUILD/espresso/src/core/specfunc.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/statistics_chain.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/statistics_chain.cpp.o -c /builddir/build/BUILD/espresso/src/core/statistics_chain.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/statistics.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/statistics.cpp.o -c /builddir/build/BUILD/espresso/src/core/statistics.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/SystemInterface.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/SystemInterface.cpp.o -c /builddir/build/BUILD/espresso/src/core/SystemInterface.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/thermostat.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/thermostat.cpp.o -c /builddir/build/BUILD/espresso/src/core/thermostat.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/tuning.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/tuning.cpp.o -c /builddir/build/BUILD/espresso/src/core/tuning.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/accumulators/Correlator.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/accumulators/Correlator.cpp.o -c /builddir/build/BUILD/espresso/src/core/accumulators/Correlator.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/accumulators/MeanVarianceCalculator.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/accumulators/MeanVarianceCalculator.cpp.o -c /builddir/build/BUILD/espresso/src/core/accumulators/MeanVarianceCalculator.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/actor/ActorList.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/actor/ActorList.cpp.o -c /builddir/build/BUILD/espresso/src/core/actor/ActorList.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/actor/DipolarBarnesHut.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/actor/DipolarBarnesHut.cpp.o -c /builddir/build/BUILD/espresso/src/core/actor/DipolarBarnesHut.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/actor/DipolarDirectSum.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/actor/DipolarDirectSum.cpp.o -c /builddir/build/BUILD/espresso/src/core/actor/DipolarDirectSum.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/actor/Mmm1dgpuForce.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/actor/Mmm1dgpuForce.cpp.o -c /builddir/build/BUILD/espresso/src/core/actor/Mmm1dgpuForce.cpp [ 22%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cosine.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cosine.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/angle_cosine.cpp [ 22%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cossquare.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cossquare.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/angle_cossquare.cpp [ 22%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/angle_harmonic.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_harmonic.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/angle_harmonic.cpp [ 22%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/bonded_coulomb.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb_sr.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb_sr.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/bonded_coulomb_sr.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_interaction_data.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_interaction_data.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/bonded_interaction_data.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_tab.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_tab.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/bonded_tab.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/dihedral.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/dihedral.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/dihedral.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/fene.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/fene.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/fene.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/harmonic.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic_dumbbell.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic_dumbbell.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/harmonic_dumbbell.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/quartic.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/quartic.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/quartic.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/subt_lj.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/subt_lj.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/subt_lj.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/thermalized_bond.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/thermalized_bond.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/thermalized_bond.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/umbrella.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ 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-Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/umbrella.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/umbrella.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/constraints/HomogeneousMagneticField.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/constraints/HomogeneousMagneticField.cpp.o -c /builddir/build/BUILD/espresso/src/core/constraints/HomogeneousMagneticField.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/constraints/ShapeBasedConstraint.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/constraints/ShapeBasedConstraint.cpp.o -c /builddir/build/BUILD/espresso/src/core/constraints/ShapeBasedConstraint.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/debye_hueckel.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/debye_hueckel.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/debye_hueckel.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/elc.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/elc.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/elc.cpp [ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/icc.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/icc.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/icc.cpp [ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/magnetic_non_p3m_methods.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/magnetic_non_p3m_methods.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/magnetic_non_p3m_methods.cpp [ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mdlc_correction.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ 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-Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mdlc_correction.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/mdlc_correction.cpp [ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm1d.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm1d.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/mmm1d.cpp [ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm2d.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm2d.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/mmm2d.cpp [ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm-common.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm-common.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/mmm-common.cpp [ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m-common.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m-common.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/p3m-common.cpp [ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/p3m.cpp [ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m-dipolar.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m-dipolar.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/p3m-dipolar.cpp [ 30%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m_gpu.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m_gpu.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/p3m_gpu.cpp [ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/scafacos.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/scafacos.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/scafacos.cpp [ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/fft.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/fft.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/fft.cpp [ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/coulomb.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/coulomb.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/coulomb.cpp [ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/dipole.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/dipole.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/dipole.cpp [ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/reaction_field.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/reaction_field.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/reaction_field.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/halo.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/halo.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/halo.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lattice.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lattice.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lattice.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_boundaries.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_boundaries.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb_boundaries.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_collective_interface.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_collective_interface.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb_collective_interface.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb.cpp [ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_interface.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_interface.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb_interface.cpp [ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_interpolation.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_interpolation.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb_interpolation.cpp [ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_particle_coupling.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_particle_coupling.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb_particle_coupling.cpp [ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_tribend.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_tribend.cpp.o -c /builddir/build/BUILD/espresso/src/core/immersed_boundary/ibm_tribend.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_triel.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_triel.cpp.o -c /builddir/build/BUILD/espresso/src/core/immersed_boundary/ibm_triel.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundary/ImmersedBoundaries.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/immersed_boundary/ImmersedBoundaries.cpp.o -c /builddir/build/BUILD/espresso/src/core/immersed_boundary/ImmersedBoundaries.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/bmhtf-nacl.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/bmhtf-nacl.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/bmhtf-nacl.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/buckingham.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/buckingham.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/buckingham.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/gaussian.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/gaussian.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/gaussian.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/gay_berne.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/gay_berne.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/gay_berne.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/hat.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/hat.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/hat.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/hertzian.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/hertzian.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/hertzian.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos2.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos2.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/ljcos2.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/ljcos.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/lj.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/lj.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/lj.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljgen.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljgen.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/ljgen.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/morse.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/morse.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/morse.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_interaction_data.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_interaction_data.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/nonbonded_interaction_data.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_tab.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_tab.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/nonbonded_tab.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/soft_sphere.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/soft_sphere.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/soft_sphere.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/smooth_step.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/smooth_step.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/smooth_step.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/thole.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/thole.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/thole.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/wca.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/wca.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/wca.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/affinity.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/affinity.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/affinity.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/membrane_collision.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/membrane_collision.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/membrane_collision.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/oif_global_forces.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/oif_global_forces.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/oif_global_forces.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/oif_local_forces.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/oif_local_forces.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/oif_local_forces.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/out_direction.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/out_direction.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/out_direction.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/CylindricalLBFluxDensityProfileAtParticlePositions.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/CylindricalLBFluxDensityProfileAtParticlePositions.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/CylindricalLBFluxDensityProfileAtParticlePositions.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfileAtParticlePositions.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfileAtParticlePositions.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/CylindricalLBVelocityProfileAtParticlePositions.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfile.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfile.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/CylindricalLBVelocityProfile.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/LBVelocityProfile.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/LBVelocityProfile.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/LBVelocityProfile.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/lb_inertialess_tracers.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers_cuda_interface.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers_cuda_interface.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/lb_inertialess_tracers_cuda_interface.cpp [ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/virtual_sites_com.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/virtual_sites_com.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/virtual_sites_com.cpp [ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesInertialessTracers.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesInertialessTracers.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/VirtualSitesInertialessTracers.cpp [ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesRelative.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesRelative.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/VirtualSitesRelative.cpp [ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/accumulators/TimeSeries.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/accumulators/TimeSeries.cpp.o -c /builddir/build/BUILD/espresso/src/core/accumulators/TimeSeries.cpp [ 47%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/PidObservable.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/PidObservable.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/PidObservable.cpp [ 47%] Linking CXX shared library EspressoCore.so cd /builddir/build/BUILD/espresso/mpich/src/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/EspressoCore.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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CMakeFiles/EspressoCore.dir/particle_data.cpp.o CMakeFiles/EspressoCore.dir/polymer.cpp.o CMakeFiles/EspressoCore.dir/polynom.cpp.o CMakeFiles/EspressoCore.dir/pressure.cpp.o CMakeFiles/EspressoCore.dir/random.cpp.o CMakeFiles/EspressoCore.dir/rattle.cpp.o CMakeFiles/EspressoCore.dir/reaction_ensemble.cpp.o CMakeFiles/EspressoCore.dir/rotate_system.cpp.o CMakeFiles/EspressoCore.dir/rotation.cpp.o CMakeFiles/EspressoCore.dir/RuntimeErrorCollector.cpp.o CMakeFiles/EspressoCore.dir/RuntimeError.cpp.o CMakeFiles/EspressoCore.dir/RuntimeErrorStream.cpp.o CMakeFiles/EspressoCore.dir/specfunc.cpp.o CMakeFiles/EspressoCore.dir/statistics_chain.cpp.o CMakeFiles/EspressoCore.dir/statistics.cpp.o CMakeFiles/EspressoCore.dir/SystemInterface.cpp.o CMakeFiles/EspressoCore.dir/thermostat.cpp.o CMakeFiles/EspressoCore.dir/tuning.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites.cpp.o CMakeFiles/EspressoCore.dir/accumulators/Correlator.cpp.o CMakeFiles/EspressoCore.dir/accumulators/MeanVarianceCalculator.cpp.o CMakeFiles/EspressoCore.dir/actor/ActorList.cpp.o CMakeFiles/EspressoCore.dir/actor/DipolarBarnesHut.cpp.o CMakeFiles/EspressoCore.dir/actor/DipolarDirectSum.cpp.o CMakeFiles/EspressoCore.dir/actor/Mmm1dgpuForce.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cosine.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cossquare.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_harmonic.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb_sr.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_interaction_data.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_tab.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/dihedral.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/fene.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic_dumbbell.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/quartic.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/subt_lj.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/thermalized_bond.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/umbrella.cpp.o CMakeFiles/EspressoCore.dir/constraints/HomogeneousMagneticField.cpp.o CMakeFiles/EspressoCore.dir/constraints/ShapeBasedConstraint.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/debye_hueckel.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/elc.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/icc.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/magnetic_non_p3m_methods.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mdlc_correction.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm1d.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm2d.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/mmm-common.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m-common.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m-dipolar.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/p3m_gpu.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/scafacos.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/fft.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/coulomb.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/dipole.cpp.o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/reaction_field.cpp.o CMakeFiles/EspressoCore.dir/grid_based_algorithms/halo.cpp.o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lattice.cpp.o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_boundaries.cpp.o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_collective_interface.cpp.o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb.cpp.o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_interface.cpp.o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_interpolation.cpp.o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_particle_coupling.cpp.o CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_tribend.cpp.o CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_triel.cpp.o CMakeFiles/EspressoCore.dir/immersed_boundary/ImmersedBoundaries.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/bmhtf-nacl.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/buckingham.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/gaussian.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/gay_berne.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/hat.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/hertzian.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos2.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/lj.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljgen.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/morse.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_interaction_data.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_tab.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/soft_sphere.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/smooth_step.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/thole.cpp.o CMakeFiles/EspressoCore.dir/nonbonded_interactions/wca.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/affinity.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/membrane_collision.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/oif_global_forces.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/oif_local_forces.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/out_direction.cpp.o CMakeFiles/EspressoCore.dir/observables/CylindricalLBFluxDensityProfileAtParticlePositions.cpp.o CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfileAtParticlePositions.cpp.o CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfile.cpp.o CMakeFiles/EspressoCore.dir/observables/LBVelocityProfile.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers_cuda_interface.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/virtual_sites_com.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesInertialessTracers.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesRelative.cpp.o CMakeFiles/EspressoCore.dir/accumulators/TimeSeries.cpp.o CMakeFiles/EspressoCore.dir/observables/PidObservable.cpp.o ../config/EspressoConfig.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libboost_mpi.so ../pdbparser/pdbparser.so /usr/lib/libfftw3.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 47%] Built target EspressoCore /usr/bin/make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/writer /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/writer /builddir/build/BUILD/espresso/mpich/src/core/io/writer/CMakeFiles/H5mdCore.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/core/io/writer/CMakeFiles/H5mdCore.dir/DependInfo.cmake" is newer than depender 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Scanning dependencies of target H5mdCore make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Building CXX object src/core/io/writer/CMakeFiles/H5mdCore.dir/h5md_core.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/io/writer && /usr/bin/c++ -DH5XX_USE_MPI -DH5mdCore_EXPORTS -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/H5mdCore.dir/h5md_core.cpp.o -c /builddir/build/BUILD/espresso/src/core/io/writer/h5md_core.cpp [ 49%] Linking CXX shared library H5mdCore.so cd /builddir/build/BUILD/espresso/mpich/src/core/io/writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5mdCore.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,H5mdCore.so -o H5mdCore.so CMakeFiles/H5mdCore.dir/h5md_core.cpp.o ../../EspressoCore.so /usr/lib/mpich/lib/libhdf5.so /usr/lib/libsz.so /usr/lib/libz.so /usr/lib/libdl.so /usr/lib/libm.so /usr/lib/libboost_filesystem.so ../../../config/EspressoConfig.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Built target H5mdCore /usr/bin/make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/reader /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/reader /builddir/build/BUILD/espresso/mpich/src/core/io/reader/CMakeFiles/pdbreader.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/core/io/reader/CMakeFiles/pdbreader.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/core/io/reader/CMakeFiles/pdbreader.dir/depend.internal". 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Scanning dependencies of target pdbreader make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Building CXX object src/core/io/reader/CMakeFiles/pdbreader.dir/readpdb.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/io/reader && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Dpdbreader_EXPORTS -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/pdbreader.dir/readpdb.cpp.o -c /builddir/build/BUILD/espresso/src/core/io/reader/readpdb.cpp [ 49%] Linking CXX shared library pdbreader.so cd /builddir/build/BUILD/espresso/mpich/src/core/io/reader && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbreader.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,pdbreader.so -o pdbreader.so CMakeFiles/pdbreader.dir/readpdb.cpp.o ../../EspressoCore.so ../../../pdbparser/pdbparser.so ../../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Built target pdbreader /usr/bin/make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/mpiio /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/mpiio /builddir/build/BUILD/espresso/mpich/src/core/io/mpiio/CMakeFiles/mpiio.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/core/io/mpiio/CMakeFiles/mpiio.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/core/io/mpiio/CMakeFiles/mpiio.dir/depend.internal". 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Scanning dependencies of target mpiio make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Building CXX object src/core/io/mpiio/CMakeFiles/mpiio.dir/mpiio.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/io/mpiio && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Dmpiio_EXPORTS -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/mpiio.dir/mpiio.cpp.o -c /builddir/build/BUILD/espresso/src/core/io/mpiio/mpiio.cpp [ 49%] Linking CXX shared library mpiio.so cd /builddir/build/BUILD/espresso/mpich/src/core/io/mpiio && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpiio.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,mpiio.so -o mpiio.so CMakeFiles/mpiio.dir/mpiio.cpp.o ../../EspressoCore.so ../../../config/EspressoConfig.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Built target mpiio /usr/bin/make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/shapes /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/shapes /builddir/build/BUILD/espresso/mpich/src/core/shapes/CMakeFiles/Shapes.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/core/shapes/CMakeFiles/Shapes.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/core/shapes/CMakeFiles/Shapes.dir/depend.internal". 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/Cylinder.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Cylinder.cpp [ 49%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Ellipsoid.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/Ellipsoid.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Ellipsoid.cpp [ 49%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/HollowCone.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/HollowCone.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/HollowCone.cpp [ 49%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Rhomboid.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/Rhomboid.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Rhomboid.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/SimplePore.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/SimplePore.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/SimplePore.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Slitpore.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/Slitpore.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Slitpore.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Sphere.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/Sphere.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Sphere.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/SpheroCylinder.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/SpheroCylinder.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/SpheroCylinder.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Stomatocyte.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/Stomatocyte.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Stomatocyte.cpp [ 52%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Torus.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/Torus.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Torus.cpp [ 52%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Wall.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Shapes.dir/Wall.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Wall.cpp [ 52%] Linking CXX shared library Shapes.so cd /builddir/build/BUILD/espresso/mpich/src/core/shapes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Shapes.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,Shapes.so -o Shapes.so CMakeFiles/Shapes.dir/Cylinder.cpp.o CMakeFiles/Shapes.dir/Ellipsoid.cpp.o CMakeFiles/Shapes.dir/HollowCone.cpp.o CMakeFiles/Shapes.dir/Rhomboid.cpp.o CMakeFiles/Shapes.dir/SimplePore.cpp.o CMakeFiles/Shapes.dir/Slitpore.cpp.o CMakeFiles/Shapes.dir/Sphere.cpp.o CMakeFiles/Shapes.dir/SpheroCylinder.cpp.o CMakeFiles/Shapes.dir/Stomatocyte.cpp.o CMakeFiles/Shapes.dir/Torus.cpp.o CMakeFiles/Shapes.dir/Wall.cpp.o ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 52%] Built target Shapes /usr/bin/make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/cluster_analysis /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend.internal". Scanning dependencies of target cluster_analysis make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Building CXX object src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/Cluster.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Dcluster_analysis_EXPORTS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/cluster_analysis.dir/Cluster.cpp.o -c /builddir/build/BUILD/espresso/src/core/cluster_analysis/Cluster.cpp [ 53%] Building CXX object src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/ClusterStructure.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Dcluster_analysis_EXPORTS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/cluster_analysis.dir/ClusterStructure.cpp.o -c /builddir/build/BUILD/espresso/src/core/cluster_analysis/ClusterStructure.cpp [ 53%] Linking CXX shared library cluster_analysis.so cd /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis && /usr/bin/cmake -E cmake_link_script CMakeFiles/cluster_analysis.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,cluster_analysis.so -o cluster_analysis.so CMakeFiles/cluster_analysis.dir/Cluster.cpp.o CMakeFiles/cluster_analysis.dir/ClusterStructure.cpp.o ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Built target cluster_analysis /usr/bin/make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/script_interface /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/script_interface /builddir/build/BUILD/espresso/mpich/src/script_interface/CMakeFiles/EspressoScriptInterface.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/script_interface/CMakeFiles/EspressoScriptInterface.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/script_interface/CMakeFiles/EspressoScriptInterface.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/script_interface/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/script_interface/CMakeFiles/EspressoScriptInterface.dir/depend.internal". Scanning dependencies of target EspressoScriptInterface make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/accumulators/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/accumulators/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/accumulators/initialize.cpp [ 53%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/initialize.cpp [ 53%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/collision_detection/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/collision_detection/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/collision_detection/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/constraints/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/constraints/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/constraints/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/cluster_analysis/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/cluster_analysis/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/cluster_analysis/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/lbboundaries/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/lbboundaries/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/lbboundaries/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/virtual_sites/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/virtual_sites/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/virtual_sites/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/observables/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/observables/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/observables/initialize.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/pair_criteria/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/pair_criteria/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/pair_criteria/initialize.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/mpiio/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/mpiio/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/mpiio/initialize.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/ScriptInterfaceBase.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/ScriptInterfaceBase.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/ScriptInterfaceBase.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/shapes/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/shapes/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/shapes/initialize.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/ParallelScriptInterface.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/ParallelScriptInterface.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/ParallelScriptInterface.cpp [ 58%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/h5md/initialize.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/h5md/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/h5md/initialize.cpp [ 58%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/h5md/h5md.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/h5md/h5md.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/h5md/h5md.cpp [ 58%] Linking CXX shared library EspressoScriptInterface.so cd /builddir/build/BUILD/espresso/mpich/src/script_interface && /usr/bin/cmake -E cmake_link_script CMakeFiles/EspressoScriptInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,EspressoScriptInterface.so -o EspressoScriptInterface.so CMakeFiles/EspressoScriptInterface.dir/accumulators/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/collision_detection/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/constraints/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/cluster_analysis/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/lbboundaries/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/virtual_sites/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/observables/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/pair_criteria/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/mpiio/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/ScriptInterfaceBase.cpp.o CMakeFiles/EspressoScriptInterface.dir/shapes/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/ParallelScriptInterface.cpp.o CMakeFiles/EspressoScriptInterface.dir/h5md/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/h5md/h5md.cpp.o ../core/shapes/Shapes.so ../core/cluster_analysis/cluster_analysis.so ../core/io/mpiio/mpiio.so ../core/io/reader/pdbreader.so ../core/io/writer/H5mdCore.so ../core/EspressoCore.so ../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so /usr/lib/mpich/lib/libhdf5.so /usr/lib/libsz.so /usr/lib/libz.so /usr/lib/libdl.so /usr/lib/libm.so /usr/lib/libboost_filesystem.so make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Built target EspressoScriptInterface /usr/bin/make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/object_in_fluid /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend.internal". Scanning dependencies of target object_in_fluid make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//__init__.py cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_classes.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//oif_classes.py cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_utils.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//oif_utils.py make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Built target object_in_fluid /usr/bin/make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Generating gen_pxiconfig.cpp cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/python3 /builddir/build/BUILD/espresso/src/python/espressomd/gen_pxiconfig.py /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/mpich/src/python/espressomd/gen_pxiconfig.cpp Reading definitions from /builddir/build/BUILD/espresso/src/config/features.def... Done. Writing /builddir/build/BUILD/espresso/mpich/src/python/espressomd/gen_pxiconfig.cpp... Done. cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend.internal". Scanning dependencies of target gen_pxiconfig make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Building CXX object src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/gen_pxiconfig.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/gen_pxiconfig.dir/gen_pxiconfig.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/gen_pxiconfig.cpp [ 58%] Linking CXX executable gen_pxiconfig cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/gen_pxiconfig.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gen_pxiconfig.dir/gen_pxiconfig.cpp.o -o gen_pxiconfig ../../config/EspressoConfig.so make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Built target gen_pxiconfig /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Generating myconfig.pxi cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && ./gen_pxiconfig > /builddir/build/BUILD/espresso/mpich/src/python/espressomd/myconfig.pxi [ 60%] Generating polymer.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/polymer.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/polymer.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend.internal". Scanning dependencies of target espressomd_polymer make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 60%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_polymer.dir/polymer.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_polymer_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_polymer.dir/polymer.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/polymer.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/polymer.cpp:8876:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 8876 | }; | ^ [ 60%] Linking CXX shared library polymer.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_polymer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,polymer.so -o polymer.so CMakeFiles/espressomd_polymer.dir/polymer.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 60%] Built target espressomd_polymer /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Generating visualization_opengl.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/visualization_opengl.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend.internal". Scanning dependencies of target espressomd_visualization_opengl make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/visualization_opengl.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_visualization_opengl_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_visualization_opengl.dir/visualization_opengl.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78058:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78058 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78160:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78160 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78274:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78274 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78388:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78388 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78494:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78494 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78601:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78601 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78715:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78715 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78817:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78817 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:78924:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78924 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:79045:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 79045 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:87660:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 87660 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_opengl.cpp:90954:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 90954 | }; | ^ [ 61%] Linking CXX shared library visualization_opengl.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_visualization_opengl.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,visualization_opengl.so -o visualization_opengl.so CMakeFiles/espressomd_visualization_opengl.dir/visualization_opengl.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Built target espressomd_visualization_opengl /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Generating thermostat.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/thermostat.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/thermostat.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend.internal". Scanning dependencies of target espressomd_thermostat make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/thermostat.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_thermostat_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_thermostat.dir/thermostat.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/thermostat.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/thermostat.cpp:11993:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11993 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/thermostat.cpp:12100:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12100 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/thermostat.cpp:12214:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12214 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/thermostat.cpp:14646:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 14646 | }; | ^ [ 63%] Linking CXX shared library thermostat.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_thermostat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,thermostat.so -o thermostat.so CMakeFiles/espressomd_thermostat.dir/thermostat.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Built target espressomd_thermostat /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Generating system.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/system.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/system.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_system.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_system.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_system.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_system.dir/depend.internal". Scanning dependencies of target espressomd_system make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_system.dir/system.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_system_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_system.dir/system.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/system.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/system.cpp:17584:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 17584 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/system.cpp:22553:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 22553 | }; | ^ [ 63%] Linking CXX shared library system.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_system.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,system.so -o system.so CMakeFiles/espressomd_system.dir/system.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Built target espressomd_system /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Generating visualization_mayavi.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/visualization_mayavi.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_mayavi.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend.internal". Scanning dependencies of target espressomd_visualization_mayavi make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/visualization_mayavi.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_visualization_mayavi_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_visualization_mayavi.dir/visualization_mayavi.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_mayavi.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_mayavi.cpp:10845:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10845 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_mayavi.cpp:10959:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10959 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization_mayavi.cpp:13624:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 13624 | }; | ^ [ 63%] Linking CXX shared library visualization_mayavi.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_visualization_mayavi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,visualization_mayavi.so -o visualization_mayavi.so CMakeFiles/espressomd_visualization_mayavi.dir/visualization_mayavi.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Built target espressomd_visualization_mayavi /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Generating scafacos.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/scafacos.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/scafacos.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend.internal". Scanning dependencies of target espressomd_scafacos make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/scafacos.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_scafacos_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_scafacos.dir/scafacos.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/scafacos.cpp [ 65%] Linking CXX shared library scafacos.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_scafacos.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,scafacos.so -o scafacos.so CMakeFiles/espressomd_scafacos.dir/scafacos.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 65%] Built target espressomd_scafacos /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 65%] Generating globals.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/globals.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/globals.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_globals.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_globals.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend.internal". Scanning dependencies of target espressomd_globals make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 65%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_globals.dir/globals.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_globals_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_globals.dir/globals.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/globals.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/globals.cpp:6695:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 6695 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/globals.cpp:9418:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 9418 | }; | ^ [ 66%] Linking CXX shared library globals.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_globals.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,globals.so -o globals.so CMakeFiles/espressomd_globals.dir/globals.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 66%] Built target espressomd_globals /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 66%] Generating diamond.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/diamond.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/diamond.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend.internal". Scanning dependencies of target espressomd_diamond make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 66%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_diamond.dir/diamond.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_diamond_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_diamond.dir/diamond.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/diamond.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/diamond.cpp:7225:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7225 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/diamond.cpp:10690:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10690 | }; | ^ [ 68%] Linking CXX shared library diamond.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_diamond.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,diamond.so -o diamond.so CMakeFiles/espressomd_diamond.dir/diamond.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 68%] Built target espressomd_diamond /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 68%] Generating _init.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/_init.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/_init.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd__init.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd__init.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd__init.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd__init.dir/depend.internal". Scanning dependencies of target espressomd__init make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 68%] Building CXX object src/python/espressomd/CMakeFiles/espressomd__init.dir/_init.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd__init_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd__init.dir/_init.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/_init.cpp [ 69%] Linking CXX shared library _init.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd__init.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,_init.so -o _init.so CMakeFiles/espressomd__init.dir/_init.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 69%] Built target espressomd__init /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 69%] Generating magnetostatics.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/magnetostatics.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatics.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend.internal". Scanning dependencies of target espressomd_magnetostatics make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/magnetostatics.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_magnetostatics_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_magnetostatics.dir/magnetostatics.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatics.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatics.cpp:11660:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11660 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatics.cpp:11746:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11746 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatics.cpp:11825:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11825 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatics.cpp:16155:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 16155 | }; | ^ [ 71%] Linking CXX shared library magnetostatics.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_magnetostatics.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,magnetostatics.so -o magnetostatics.so CMakeFiles/espressomd_magnetostatics.dir/magnetostatics.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target espressomd_magnetostatics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Generating collision_detection.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/collision_detection.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/collision_detection.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend.internal". Scanning dependencies of target espressomd_collision_detection make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/collision_detection.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_collision_detection_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_collision_detection.dir/collision_detection.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/collision_detection.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/collision_detection.cpp:7163:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7163 | }; | ^ [ 71%] Linking CXX shared library collision_detection.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_collision_detection.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,collision_detection.so -o collision_detection.so CMakeFiles/espressomd_collision_detection.dir/collision_detection.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 73%] Built target espressomd_collision_detection /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 73%] Generating profiler.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/profiler.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/profiler.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend.internal". Scanning dependencies of target espressomd_profiler make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 73%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_profiler.dir/profiler.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_profiler_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/profiler/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_profiler.dir/profiler.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/profiler.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/profiler.cpp:2350:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 2350 | }; | ^ [ 73%] Linking CXX shared library profiler.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_profiler.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,profiler.so -o profiler.so CMakeFiles/espressomd_profiler.dir/profiler.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_profiler /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Generating electrokinetics.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/electrokinetics.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrokinetics.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend.internal". Scanning dependencies of target espressomd_electrokinetics make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/electrokinetics.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_electrokinetics_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_electrokinetics.dir/electrokinetics.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrokinetics.cpp [ 74%] Linking CXX shared library electrokinetics.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_electrokinetics.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,electrokinetics.so -o electrokinetics.so CMakeFiles/espressomd_electrokinetics.dir/electrokinetics.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_electrokinetics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Generating particle_data.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/particle_data.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend.internal". Scanning dependencies of target espressomd_particle_data make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/particle_data.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_particle_data_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_particle_data.dir/particle_data.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:30439:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30439 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:30605:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30605 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:30747:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30747 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:30854:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30854 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:30956:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30956 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:31070:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31070 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:31184:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31184 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:31291:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31291 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:31393:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31393 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:31491:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31491 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:31589:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31589 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:37361:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 37361 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/particle_data.cpp:40070:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 40070 | }; | ^ [ 74%] Linking CXX shared library particle_data.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_particle_data.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,particle_data.so -o particle_data.so CMakeFiles/espressomd_particle_data.dir/particle_data.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_particle_data /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Generating reaction_ensemble.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/reaction_ensemble.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/reaction_ensemble.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend.internal". Scanning dependencies of target espressomd_reaction_ensemble make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 76%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/reaction_ensemble.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_reaction_ensemble_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_reaction_ensemble.dir/reaction_ensemble.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/reaction_ensemble.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/reaction_ensemble.cpp:10616:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10616 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/reaction_ensemble.cpp:10705:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10705 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/reaction_ensemble.cpp:10810:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10810 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/reaction_ensemble.cpp:10914:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10914 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/reaction_ensemble.cpp:11008:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11008 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/reaction_ensemble.cpp:15717:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15717 | }; | ^ [ 76%] Linking CXX shared library reaction_ensemble.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_reaction_ensemble.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,reaction_ensemble.so -o reaction_ensemble.so CMakeFiles/espressomd_reaction_ensemble.dir/reaction_ensemble.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 76%] Built target espressomd_reaction_ensemble /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 76%] Generating cuda_init.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/cuda_init.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/cuda_init.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend.internal". Scanning dependencies of target espressomd_cuda_init make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 77%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/cuda_init.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_cuda_init_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_cuda_init.dir/cuda_init.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/cuda_init.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/cuda_init.cpp:2187:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 2187 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/cuda_init.cpp:4385:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 4385 | }; | ^ [ 77%] Linking CXX shared library cuda_init.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_cuda_init.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,cuda_init.so -o cuda_init.so CMakeFiles/espressomd_cuda_init.dir/cuda_init.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 77%] Built target espressomd_cuda_init /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 79%] Generating analyze.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/analyze.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/analyze.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend.internal". Scanning dependencies of target espressomd_analyze make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 79%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_analyze.dir/analyze.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_analyze_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_analyze.dir/analyze.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/analyze.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/analyze.cpp:28903:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 28903 | }; | ^ [ 79%] Linking CXX shared library analyze.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_analyze.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,analyze.so -o analyze.so CMakeFiles/espressomd_analyze.dir/analyze.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 79%] Built target espressomd_analyze /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 79%] Generating cellsystem.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/cellsystem.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/cellsystem.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend.internal". Scanning dependencies of target espressomd_cellsystem make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 79%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/cellsystem.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_cellsystem_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_cellsystem.dir/cellsystem.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/cellsystem.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/cellsystem.cpp:9417:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 9417 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/cellsystem.cpp:12535:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12535 | }; | ^ [ 79%] Linking CXX shared library cellsystem.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_cellsystem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,cellsystem.so -o cellsystem.so CMakeFiles/espressomd_cellsystem.dir/cellsystem.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 80%] Built target espressomd_cellsystem /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 80%] Generating actors.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/actors.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/actors.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_actors.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_actors.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend.internal". Scanning dependencies of target espressomd_actors make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 80%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_actors.dir/actors.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_actors_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_actors.dir/actors.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/actors.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/actors.cpp:7631:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7631 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/actors.cpp:7737:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7737 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/actors.cpp:11469:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11469 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/actors.cpp:13355:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 13355 | }; | ^ [ 80%] Linking CXX shared library actors.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_actors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,actors.so -o actors.so CMakeFiles/espressomd_actors.dir/actors.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 80%] Built target espressomd_actors /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Generating code_info.pyx cd /builddir/build/BUILD/espresso/src/python/espressomd && /usr/bin/python3 gen_code_info.py /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/mpich/src/python/espressomd/code_info.pyx Reading definitions from /builddir/build/BUILD/espresso/src/config/features.def... Done. Writing /builddir/build/BUILD/espresso/mpich/src/python/espressomd/code_info.pyx... Done. [ 82%] Generating code_info.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/code_info.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/code_info.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend.internal". Scanning dependencies of target espressomd_code_info make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_code_info.dir/code_info.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_code_info_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_code_info.dir/code_info.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/code_info.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/code_info.cpp:2890:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 2890 | }; | ^ [ 82%] Linking CXX shared library code_info.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_code_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,code_info.so -o code_info.so CMakeFiles/espressomd_code_info.dir/code_info.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Built target espressomd_code_info /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Generating electrostatics.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/electrostatics.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend.internal". Scanning dependencies of target espressomd_electrostatics make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/electrostatics.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_electrostatics_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_electrostatics.dir/electrostatics.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:17957:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 17957 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:18037:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18037 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:18117:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18117 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:18198:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18198 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:18279:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18279 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:18359:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18359 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:18473:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18473 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:18575:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18575 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:24109:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 24109 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatics.cpp:26567:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 26567 | }; | ^ [ 82%] Linking CXX shared library electrostatics.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_electrostatics.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,electrostatics.so -o electrostatics.so CMakeFiles/espressomd_electrostatics.dir/electrostatics.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 84%] Built target espressomd_electrostatics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 84%] Generating script_interface.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/script_interface.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/script_interface.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend.internal". Scanning dependencies of target espressomd_script_interface make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 84%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/script_interface.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_script_interface_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_script_interface.dir/script_interface.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/script_interface.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/script_interface.cpp:11778:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11778 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/script_interface.cpp:11870:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11870 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/script_interface.cpp:11984:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11984 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/script_interface.cpp:12094:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12094 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/script_interface.cpp:16204:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 16204 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/script_interface.cpp:18918:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18918 | }; | ^ [ 85%] Linking CXX shared library script_interface.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_script_interface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,script_interface.so -o script_interface.so CMakeFiles/espressomd_script_interface.dir/script_interface.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 85%] Built target espressomd_script_interface /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 85%] Generating magnetostatic_extensions.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/magnetostatic_extensions.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatic_extensions.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend.internal". Scanning dependencies of target espressomd_magnetostatic_extensions make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 85%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/magnetostatic_extensions.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_magnetostatic_extensions_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_magnetostatic_extensions.dir/magnetostatic_extensions.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatic_extensions.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/magnetostatic_extensions.cpp:7539:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7539 | }; | ^ [ 85%] Linking CXX shared library magnetostatic_extensions.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_magnetostatic_extensions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,magnetostatic_extensions.so -o magnetostatic_extensions.so CMakeFiles/espressomd_magnetostatic_extensions.dir/magnetostatic_extensions.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 87%] Built target espressomd_magnetostatic_extensions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 87%] Generating galilei.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/galilei.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/galilei.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend.internal". Scanning dependencies of target espressomd_galilei make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 88%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_galilei.dir/galilei.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_galilei_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_galilei.dir/galilei.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/galilei.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/galilei.cpp:5439:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 5439 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/galilei.cpp:8088:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 8088 | }; | ^ [ 88%] Linking CXX shared library galilei.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_galilei.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,galilei.so -o galilei.so CMakeFiles/espressomd_galilei.dir/galilei.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 88%] Built target espressomd_galilei /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 88%] Generating version.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/version.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/version.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_version.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_version.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_version.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_version.dir/depend.internal". Scanning dependencies of target espressomd_version make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_version.dir/version.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_version_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_version.dir/version.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/version.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/version.cpp:3120:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 3120 | }; | ^ [ 90%] Linking CXX shared library version.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_version.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,version.so -o version.so CMakeFiles/espressomd_version.dir/version.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Built target espressomd_version /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Generating integrate.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/integrate.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/integrate.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend.internal". Scanning dependencies of target espressomd_integrate make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_integrate.dir/integrate.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_integrate_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_integrate.dir/integrate.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/integrate.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/integrate.cpp:6929:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 6929 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/integrate.cpp:10261:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10261 | }; | ^ [ 90%] Linking CXX shared library integrate.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_integrate.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,integrate.so -o integrate.so CMakeFiles/espressomd_integrate.dir/integrate.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Built target espressomd_integrate /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Generating visualization.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/visualization.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend.internal". Scanning dependencies of target espressomd_visualization make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_visualization.dir/visualization.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_visualization_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_visualization.dir/visualization.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/visualization.cpp:4156:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 4156 | }; | ^ [ 92%] Linking CXX shared library visualization.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_visualization.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,visualization.so -o visualization.so CMakeFiles/espressomd_visualization.dir/visualization.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 92%] Built target espressomd_visualization /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 92%] Generating minimize_energy.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/minimize_energy.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/minimize_energy.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend.internal". Scanning dependencies of target espressomd_minimize_energy make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 92%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/minimize_energy.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_minimize_energy_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_minimize_energy.dir/minimize_energy.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/minimize_energy.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/minimize_energy.cpp:6453:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 6453 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/minimize_energy.cpp:9311:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 9311 | }; | ^ [ 93%] Linking CXX shared library minimize_energy.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_minimize_energy.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,minimize_energy.so -o minimize_energy.so CMakeFiles/espressomd_minimize_energy.dir/minimize_energy.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 93%] Built target espressomd_minimize_energy /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 95%] Generating electrostatic_extensions.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/electrostatic_extensions.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatic_extensions.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend.internal". Scanning dependencies of target espressomd_electrostatic_extensions make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 95%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/electrostatic_extensions.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_electrostatic_extensions_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_electrostatic_extensions.dir/electrostatic_extensions.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatic_extensions.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatic_extensions.cpp:10975:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10975 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatic_extensions.cpp:11056:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11056 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatic_extensions.cpp:11138:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11138 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/electrostatic_extensions.cpp:14570:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 14570 | }; | ^ [ 95%] Linking CXX shared library electrostatic_extensions.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_electrostatic_extensions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,electrostatic_extensions.so -o electrostatic_extensions.so CMakeFiles/espressomd_electrostatic_extensions.dir/electrostatic_extensions.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 95%] Built target espressomd_electrostatic_extensions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 96%] Generating interactions.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/interactions.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend.internal". Scanning dependencies of target espressomd_interactions make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 96%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_interactions.dir/interactions.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_interactions_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_interactions.dir/interactions.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52186:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52186 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52276:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52276 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52366:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52366 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52456:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52456 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52546:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52546 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52636:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52636 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52726:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52726 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52816:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52816 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52906:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52906 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:52996:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52996 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:53086:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53086 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:53176:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53176 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:53292:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53292 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:53411:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53411 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:53497:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53497 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:53611:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53611 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:53725:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53725 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:53823:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53823 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:68266:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 68266 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/interactions.cpp:72002:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 72002 | }; | ^ [ 96%] Linking CXX shared library interactions.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_interactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,interactions.so -o interactions.so CMakeFiles/espressomd_interactions.dir/interactions.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 96%] Built target espressomd_interactions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 98%] Generating lb.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/lb.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_lb.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_lb.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend.internal". Scanning dependencies of target espressomd_lb make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 98%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_lb.dir/lb.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_lb_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_lb.dir/lb.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp:15017:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15017 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp:15090:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15090 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp:15281:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15281 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp:15399:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15399 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp:15506:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15506 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp:15608:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15608 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp:19525:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 19525 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/lb.cpp:21955:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 21955 | }; | ^ [ 98%] Linking CXX shared library lb.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_lb.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,lb.so -o lb.so CMakeFiles/espressomd_lb.dir/lb.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 98%] Built target espressomd_lb /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 98%] Generating utils.cpp cd /builddir/build/BUILD/espresso/mpich/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/utils.pyx -o /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_utils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_utils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend.internal". Scanning dependencies of target espressomd_utils make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 98%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_utils.dir/utils.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -Despressomd_utils_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_utils.dir/utils.cpp.o -c /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp:11615:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11615 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp:11717:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11717 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp:11819:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11819 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp:11921:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11921 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp:12023:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12023 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp:12137:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12137 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp:15420:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15420 | }; | ^ /builddir/build/BUILD/espresso/mpich/src/python/espressomd/utils.cpp:18288:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18288 | }; | ^ [ 98%] Linking CXX shared library utils.so cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_utils.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,utils.so -o utils.so CMakeFiles/espressomd_utils.dir/utils.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target espressomd_utils /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd.dir/depend.internal". Scanning dependencies of target espressomd make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__cinit__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//__cinit__.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//__init__.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/accumulators.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//accumulators.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/checkpointing.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//checkpointing.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/cluster_analysis.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//cluster_analysis.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/comfixed.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//comfixed.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/constraints.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//constraints.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/drude_helpers.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//drude_helpers.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/ekboundaries.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//ekboundaries.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_code_info.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//gen_code_info.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_pxiconfig.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//gen_pxiconfig.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/highlander.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//highlander.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/lbboundaries.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//lbboundaries.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/observables.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//observables.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/pair_criteria.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//pair_criteria.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/shapes.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//shapes.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/virtual_sites.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//virtual_sites.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/io/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd/io/__init__.py make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target espressomd /usr/bin/make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python /builddir/build/BUILD/espresso/mpich/src/python/CMakeFiles/pypresso.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/mpich/src/python/CMakeFiles/pypresso.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/CMakeFiles/pypresso.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/mpich/src/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/mpich/src/python/CMakeFiles/pypresso.dir/depend.internal". Scanning dependencies of target pypresso make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/CMakeFiles/pypresso.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target pypresso make[1]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/mpich/CMakeFiles 0 ~/build/BUILD/espresso + popd + module unload mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash unload mpi/mpich-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + for mpi in mpich openmpi + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + mkdir openmpi + pushd openmpi ~/build/BUILD/espresso/openmpi ~/build/BUILD/espresso + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DWITH_PYTHON=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DWITH_TESTS=ON -DCMAKE_SKIP_RPATH=ON -DINSTALL_PYPRESSO=OFF -DCYTHON_EXECUTABLE=/usr/bin/cython -DLIBDIR=/usr/lib/openmpi/lib -DPYTHON_INSTDIR=/usr/lib/python3.8/site-packages/openmpi .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Config file: /builddir/build/BUILD/espresso/src/config/myconfig-default.hpp -- Performing Test result__PRETTY_FUNCTION__ -- Performing Test result__PRETTY_FUNCTION__ - Success CUDA_TOOLKIT_ROOT_DIR not found or specified -- Could NOT find CUDA (missing: CUDA_TOOLKIT_ROOT_DIR CUDA_NVCC_EXECUTABLE CUDA_INCLUDE_DIRS CUDA_CUDART_LIBRARY) (Required is at least version "9.0") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.8", minimum required is "3.3") -- Found PythonInterp: /usr/bin/python3 (found version "3.8") -- Found Cython version 0.29.13 -- Found Cython: /usr/bin/cython (Required is at least version "0.23") -- Found NumPy: /usr/lib/python3.8/site-packages/numpy/core/include (found version "1.17.2") -- NumPy ver. 1.17.2 found (include: /usr/lib/python3.8/site-packages/numpy/core/include) -- Found FFTW3: /usr/lib/libfftw3.so -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/openmpi/lib/libhdf5.so;/usr/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.5", minimum required is "1.8") found components: C -- Found PY_h5py: /usr/lib/python3.8/site-packages/h5py -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Found GSL: /usr/include (found version "2.6") -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost: /usr/include (found suitable version "1.69.0", minimum required is "1.67.0") found components: mpi serialization filesystem system unit_test_framework -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE SPHINX_API_DOC_EXE) (Required is at least version "1.6.6") -- Could NOT find Git (missing: GIT_EXECUTABLE) -- The following features have been enabled: * HDF5 (required version >= 1.8), parallel -- The following OPTIONAL packages have been found: * FFTW3 * HDF5 (required version >= 1.8), parallel * PkgConfig * GSL -- The following REQUIRED packages have been found: * PythonInterp * Cython (required version >= 0.23) * NumPy * MPI * Boost (required version >= 1.67.0) -- The following OPTIONAL packages have not been found: * CUDA (required version >= 9.0) * Doxygen * Sphinx (required version >= 1.6.6) * Git -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIBDIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/espresso/openmpi + /usr/bin/make -O -j1 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/espresso -B/builddir/build/BUILD/espresso/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/openmpi/CMakeFiles /builddir/build/BUILD/espresso/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/pdbparser /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/pdbparser /builddir/build/BUILD/espresso/openmpi/src/pdbparser/CMakeFiles/pdbparser.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/pdbparser/CMakeFiles/pdbparser.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/pdbparser/CMakeFiles/pdbparser.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/pdbparser/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/pdbparser/CMakeFiles/pdbparser.dir/depend.internal". Scanning dependencies of target pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 1%] Building CXX object src/pdbparser/CMakeFiles/pdbparser.dir/src/PdbParser.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/pdbparser && /usr/bin/c++ -Dpdbparser_EXPORTS -I/builddir/build/BUILD/espresso/src/pdbparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/pdbparser.dir/src/PdbParser.cpp.o -c /builddir/build/BUILD/espresso/src/pdbparser/src/PdbParser.cpp [ 1%] Linking CXX shared library pdbparser.so cd /builddir/build/BUILD/espresso/openmpi/src/pdbparser && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbparser.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,pdbparser.so -o pdbparser.so CMakeFiles/pdbparser.dir/src/PdbParser.cpp.o make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 1%] Built target pdbparser /usr/bin/make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/config /builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/generate_config_features.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/generate_config_features.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/generate_config_features.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/generate_config_features.dir/depend.internal". Scanning dependencies of target generate_config_features make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 3%] Generating config-features.hpp, config-features.cpp cd /builddir/build/BUILD/espresso/openmpi/src/config && /usr/bin/python3 /builddir/build/BUILD/espresso/src/config/gen_featureconfig.py /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/openmpi/src/config/config-features.hpp /builddir/build/BUILD/espresso/openmpi/src/config/config-features.cpp Reading definitions from /builddir/build/BUILD/espresso/src/config/features.def... Done. Writing /builddir/build/BUILD/espresso/openmpi/src/config/config-features.hpp... Done. Writing /builddir/build/BUILD/espresso/openmpi/src/config/config-features.cpp... Done. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 3%] Built target generate_config_features /usr/bin/make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/CMakeFiles/myconfig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/CMakeFiles/myconfig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/CMakeFiles/myconfig.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/CMakeFiles/myconfig.dir/depend.internal". Scanning dependencies of target myconfig make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'CMakeFiles/myconfig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 3%] Built target myconfig /usr/bin/make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/config /builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/check_myconfig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/check_myconfig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/check_myconfig.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/check_myconfig.dir/depend.internal". 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-mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/collision.cpp.o -c /builddir/build/BUILD/espresso/src/core/collision.cpp [ 4%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/comfixed_global.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/constraints.cpp.o -c /builddir/build/BUILD/espresso/src/core/constraints.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/debug.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/debug.cpp.o -c /builddir/build/BUILD/espresso/src/core/debug.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/diamond.cpp.o cd 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-Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/diamond.cpp.o -c /builddir/build/BUILD/espresso/src/core/diamond.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/espresso/src/core/domain_decomposition.cpp [ 6%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/dpd.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/dpd.cpp.o -c /builddir/build/BUILD/espresso/src/core/dpd.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/energy.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/energy.cpp.o -c /builddir/build/BUILD/espresso/src/core/energy.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/errorhandling.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/errorhandling.cpp.o -c /builddir/build/BUILD/espresso/src/core/errorhandling.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/EspressoSystemInterface.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/EspressoSystemInterface.cpp.o -c /builddir/build/BUILD/espresso/src/core/EspressoSystemInterface.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/forcecap.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/forcecap.cpp.o -c /builddir/build/BUILD/espresso/src/core/forcecap.cpp [ 7%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/forces.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/forces.cpp.o -c /builddir/build/BUILD/espresso/src/core/forces.cpp [ 9%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/galilei.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/galilei.cpp.o -c /builddir/build/BUILD/espresso/src/core/galilei.cpp [ 9%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/ghosts.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/ghosts.cpp.o -c /builddir/build/BUILD/espresso/src/core/ghosts.cpp [ 9%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/global.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/global.cpp.o -c /builddir/build/BUILD/espresso/src/core/global.cpp [ 9%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/grid.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundaries.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/immersed_boundaries.cpp.o -c /builddir/build/BUILD/espresso/src/core/immersed_boundaries.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/event.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/event.cpp.o -c /builddir/build/BUILD/espresso/src/core/event.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/integrate.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/integrate.cpp.o -c /builddir/build/BUILD/espresso/src/core/integrate.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/integrators/velocity_verlet_npt.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/integrators/velocity_verlet_npt.cpp.o -c /builddir/build/BUILD/espresso/src/core/integrators/velocity_verlet_npt.cpp [ 11%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/layered.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/layered.cpp.o -c /builddir/build/BUILD/espresso/src/core/layered.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/metadynamics.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/metadynamics.cpp.o -c /builddir/build/BUILD/espresso/src/core/metadynamics.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/integrators/steepest_descent.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/integrators/steepest_descent.cpp.o -c /builddir/build/BUILD/espresso/src/core/integrators/steepest_descent.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/npt.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/npt.cpp.o -c /builddir/build/BUILD/espresso/src/core/npt.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nsquare.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nsquare.cpp.o -c /builddir/build/BUILD/espresso/src/core/nsquare.cpp [ 12%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/partCfg_global.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/partCfg_global.cpp.o -c /builddir/build/BUILD/espresso/src/core/partCfg_global.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/particle_data.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/particle_data.cpp.o -c /builddir/build/BUILD/espresso/src/core/particle_data.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/polymer.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/polymer.cpp.o -c /builddir/build/BUILD/espresso/src/core/polymer.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/polynom.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/polynom.cpp.o -c /builddir/build/BUILD/espresso/src/core/polynom.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/pressure.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/pressure.cpp.o -c /builddir/build/BUILD/espresso/src/core/pressure.cpp [ 14%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/random.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/random.cpp.o -c /builddir/build/BUILD/espresso/src/core/random.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rattle.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/rattle.cpp.o -c /builddir/build/BUILD/espresso/src/core/rattle.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/reaction_ensemble.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/reaction_ensemble.cpp.o -c /builddir/build/BUILD/espresso/src/core/reaction_ensemble.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rotate_system.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/rotate_system.cpp.o -c /builddir/build/BUILD/espresso/src/core/rotate_system.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/rotation.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/rotation.cpp.o -c /builddir/build/BUILD/espresso/src/core/rotation.cpp [ 15%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeErrorCollector.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/RuntimeErrorCollector.cpp.o -c /builddir/build/BUILD/espresso/src/core/RuntimeErrorCollector.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeError.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/RuntimeError.cpp.o -c /builddir/build/BUILD/espresso/src/core/RuntimeError.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/RuntimeErrorStream.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/RuntimeErrorStream.cpp.o -c /builddir/build/BUILD/espresso/src/core/RuntimeErrorStream.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/specfunc.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/specfunc.cpp.o -c /builddir/build/BUILD/espresso/src/core/specfunc.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/statistics_chain.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/statistics_chain.cpp.o -c /builddir/build/BUILD/espresso/src/core/statistics_chain.cpp [ 17%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/statistics.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/statistics.cpp.o -c /builddir/build/BUILD/espresso/src/core/statistics.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/SystemInterface.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/SystemInterface.cpp.o -c /builddir/build/BUILD/espresso/src/core/SystemInterface.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/thermostat.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/thermostat.cpp.o -c /builddir/build/BUILD/espresso/src/core/thermostat.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/tuning.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/tuning.cpp.o -c /builddir/build/BUILD/espresso/src/core/tuning.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites.cpp [ 19%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/accumulators/Correlator.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/accumulators/Correlator.cpp.o -c /builddir/build/BUILD/espresso/src/core/accumulators/Correlator.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/accumulators/MeanVarianceCalculator.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/accumulators/MeanVarianceCalculator.cpp.o -c /builddir/build/BUILD/espresso/src/core/accumulators/MeanVarianceCalculator.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/actor/ActorList.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/actor/ActorList.cpp.o -c /builddir/build/BUILD/espresso/src/core/actor/ActorList.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/actor/DipolarBarnesHut.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/actor/DipolarBarnesHut.cpp.o -c /builddir/build/BUILD/espresso/src/core/actor/DipolarBarnesHut.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/actor/DipolarDirectSum.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/actor/DipolarDirectSum.cpp.o -c /builddir/build/BUILD/espresso/src/core/actor/DipolarDirectSum.cpp [ 20%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/actor/Mmm1dgpuForce.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/actor/Mmm1dgpuForce.cpp.o -c /builddir/build/BUILD/espresso/src/core/actor/Mmm1dgpuForce.cpp [ 22%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cosine.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cosine.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/angle_cosine.cpp [ 22%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cossquare.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cossquare.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/angle_cossquare.cpp [ 22%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/angle_harmonic.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_harmonic.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/angle_harmonic.cpp [ 22%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/bonded_coulomb.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb_sr.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb_sr.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/bonded_coulomb_sr.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_interaction_data.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_interaction_data.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/bonded_interaction_data.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_tab.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_tab.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/bonded_tab.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/dihedral.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/dihedral.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/dihedral.cpp [ 23%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/fene.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/fene.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/fene.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/harmonic.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic_dumbbell.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/harmonic_dumbbell.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/harmonic_dumbbell.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/quartic.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/quartic.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/quartic.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/subt_lj.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/subt_lj.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/subt_lj.cpp [ 25%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/thermalized_bond.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/thermalized_bond.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/thermalized_bond.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/bonded_interactions/umbrella.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/bonded_interactions/umbrella.cpp.o -c /builddir/build/BUILD/espresso/src/core/bonded_interactions/umbrella.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/constraints/HomogeneousMagneticField.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/constraints/HomogeneousMagneticField.cpp.o -c /builddir/build/BUILD/espresso/src/core/constraints/HomogeneousMagneticField.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/constraints/ShapeBasedConstraint.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/constraints/ShapeBasedConstraint.cpp.o -c /builddir/build/BUILD/espresso/src/core/constraints/ShapeBasedConstraint.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/debye_hueckel.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/debye_hueckel.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/debye_hueckel.cpp [ 26%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/elc.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/elc.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/elc.cpp [ 28%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/icc.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ 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-m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/fft.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/fft.cpp [ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/coulomb.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include 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object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/dipole.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/dipole.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/dipole.cpp [ 31%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/reaction_field.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/electrostatics_magnetostatics/reaction_field.cpp.o -c /builddir/build/BUILD/espresso/src/core/electrostatics_magnetostatics/reaction_field.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/halo.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/halo.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/halo.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lattice.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lattice.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lattice.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_boundaries.cpp.o cd 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-Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_boundaries.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb_boundaries.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_collective_interface.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_collective_interface.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb_collective_interface.cpp [ 33%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/grid_based_algorithms/lb_particle_coupling.cpp.o -c /builddir/build/BUILD/espresso/src/core/grid_based_algorithms/lb_particle_coupling.cpp [ 34%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_tribend.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_tribend.cpp.o -c /builddir/build/BUILD/espresso/src/core/immersed_boundary/ibm_tribend.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_triel.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/immersed_boundary/ibm_triel.cpp.o -c /builddir/build/BUILD/espresso/src/core/immersed_boundary/ibm_triel.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/immersed_boundary/ImmersedBoundaries.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/immersed_boundary/ImmersedBoundaries.cpp.o -c /builddir/build/BUILD/espresso/src/core/immersed_boundary/ImmersedBoundaries.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/bmhtf-nacl.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/bmhtf-nacl.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/bmhtf-nacl.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/buckingham.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/buckingham.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/buckingham.cpp [ 36%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/gaussian.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/gaussian.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/gaussian.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/gay_berne.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/gay_berne.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/gay_berne.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/hat.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/hat.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/hat.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/hertzian.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/hertzian.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/hertzian.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos2.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos2.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/ljcos2.cpp [ 38%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljcos.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/ljcos.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/lj.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/lj.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/lj.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljgen.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/ljgen.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/ljgen.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/morse.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/morse.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/morse.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_interaction_data.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_interaction_data.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/nonbonded_interaction_data.cpp [ 39%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_tab.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/nonbonded_tab.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/nonbonded_tab.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/soft_sphere.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/soft_sphere.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/soft_sphere.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/smooth_step.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/smooth_step.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/smooth_step.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/thole.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/thole.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/thole.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/nonbonded_interactions/wca.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/nonbonded_interactions/wca.cpp.o -c /builddir/build/BUILD/espresso/src/core/nonbonded_interactions/wca.cpp [ 41%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/affinity.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/affinity.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/affinity.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/membrane_collision.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/membrane_collision.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/membrane_collision.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/oif_global_forces.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/oif_global_forces.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/oif_global_forces.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/oif_local_forces.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/oif_local_forces.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/oif_local_forces.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/object-in-fluid/out_direction.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/object-in-fluid/out_direction.cpp.o -c /builddir/build/BUILD/espresso/src/core/object-in-fluid/out_direction.cpp [ 42%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/CylindricalLBFluxDensityProfileAtParticlePositions.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/CylindricalLBFluxDensityProfileAtParticlePositions.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/CylindricalLBFluxDensityProfileAtParticlePositions.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfileAtParticlePositions.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfileAtParticlePositions.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/CylindricalLBVelocityProfileAtParticlePositions.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfile.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS 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-Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfile.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/CylindricalLBVelocityProfile.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/LBVelocityProfile.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/LBVelocityProfile.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/LBVelocityProfile.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/lb_inertialess_tracers.cpp [ 44%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers_cuda_interface.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers_cuda_interface.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/lb_inertialess_tracers_cuda_interface.cpp [ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/virtual_sites_com.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/virtual_sites_com.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/virtual_sites_com.cpp [ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesInertialessTracers.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesInertialessTracers.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/VirtualSitesInertialessTracers.cpp [ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesRelative.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesRelative.cpp.o -c /builddir/build/BUILD/espresso/src/core/virtual_sites/VirtualSitesRelative.cpp [ 46%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/accumulators/TimeSeries.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/accumulators/TimeSeries.cpp.o -c /builddir/build/BUILD/espresso/src/core/accumulators/TimeSeries.cpp [ 47%] Building CXX object src/core/CMakeFiles/EspressoCore.dir/observables/PidObservable.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core && /usr/bin/c++ -DEspressoCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/core/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/profiler/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoCore.dir/observables/PidObservable.cpp.o -c /builddir/build/BUILD/espresso/src/core/observables/PidObservable.cpp [ 47%] Linking CXX shared library EspressoCore.so cd 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CMakeFiles/EspressoCore.dir/SystemInterface.cpp.o CMakeFiles/EspressoCore.dir/thermostat.cpp.o CMakeFiles/EspressoCore.dir/tuning.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites.cpp.o CMakeFiles/EspressoCore.dir/accumulators/Correlator.cpp.o CMakeFiles/EspressoCore.dir/accumulators/MeanVarianceCalculator.cpp.o CMakeFiles/EspressoCore.dir/actor/ActorList.cpp.o CMakeFiles/EspressoCore.dir/actor/DipolarBarnesHut.cpp.o CMakeFiles/EspressoCore.dir/actor/DipolarDirectSum.cpp.o CMakeFiles/EspressoCore.dir/actor/Mmm1dgpuForce.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cosine.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_cossquare.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/angle_harmonic.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_coulomb_sr.cpp.o CMakeFiles/EspressoCore.dir/bonded_interactions/bonded_interaction_data.cpp.o 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CMakeFiles/EspressoCore.dir/object-in-fluid/affinity.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/membrane_collision.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/oif_global_forces.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/oif_local_forces.cpp.o CMakeFiles/EspressoCore.dir/object-in-fluid/out_direction.cpp.o CMakeFiles/EspressoCore.dir/observables/CylindricalLBFluxDensityProfileAtParticlePositions.cpp.o CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfileAtParticlePositions.cpp.o CMakeFiles/EspressoCore.dir/observables/CylindricalLBVelocityProfile.cpp.o CMakeFiles/EspressoCore.dir/observables/LBVelocityProfile.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/lb_inertialess_tracers_cuda_interface.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/virtual_sites_com.cpp.o CMakeFiles/EspressoCore.dir/virtual_sites/VirtualSitesInertialessTracers.cpp.o 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Scanning dependencies of target H5mdCore make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Building CXX object src/core/io/writer/CMakeFiles/H5mdCore.dir/h5md_core.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/io/writer && /usr/bin/c++ -DH5XX_USE_MPI -DH5mdCore_EXPORTS -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/H5mdCore.dir/h5md_core.cpp.o -c /builddir/build/BUILD/espresso/src/core/io/writer/h5md_core.cpp [ 49%] Linking CXX shared library H5mdCore.so cd /builddir/build/BUILD/espresso/openmpi/src/core/io/writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/H5mdCore.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,H5mdCore.so -o H5mdCore.so CMakeFiles/H5mdCore.dir/h5md_core.cpp.o ../../EspressoCore.so /usr/lib/openmpi/lib/libhdf5.so /usr/lib/libsz.so /usr/lib/libz.so /usr/lib/libdl.so /usr/lib/libm.so /usr/lib/libboost_filesystem.so ../../../config/EspressoConfig.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Built target H5mdCore /usr/bin/make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/reader /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/io/reader /builddir/build/BUILD/espresso/openmpi/src/core/io/reader/CMakeFiles/pdbreader.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/core/io/reader/CMakeFiles/pdbreader.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/core/io/reader/CMakeFiles/pdbreader.dir/depend.internal". 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Scanning dependencies of target pdbreader make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Building CXX object src/core/io/reader/CMakeFiles/pdbreader.dir/readpdb.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/io/reader && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Dpdbreader_EXPORTS -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/pdbreader.dir/readpdb.cpp.o -c /builddir/build/BUILD/espresso/src/core/io/reader/readpdb.cpp [ 49%] Linking CXX shared library pdbreader.so cd /builddir/build/BUILD/espresso/openmpi/src/core/io/reader && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbreader.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,pdbreader.so -o pdbreader.so CMakeFiles/pdbreader.dir/readpdb.cpp.o ../../EspressoCore.so ../../../pdbparser/pdbparser.so ../../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Built target pdbreader /usr/bin/make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/mpiio /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/io/mpiio /builddir/build/BUILD/espresso/openmpi/src/core/io/mpiio/CMakeFiles/mpiio.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/core/io/mpiio/CMakeFiles/mpiio.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/core/io/mpiio/CMakeFiles/mpiio.dir/depend.internal". 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Scanning dependencies of target mpiio make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Building CXX object src/core/io/mpiio/CMakeFiles/mpiio.dir/mpiio.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/io/mpiio && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Dmpiio_EXPORTS -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/mpiio.dir/mpiio.cpp.o -c /builddir/build/BUILD/espresso/src/core/io/mpiio/mpiio.cpp [ 49%] Linking CXX shared library mpiio.so cd /builddir/build/BUILD/espresso/openmpi/src/core/io/mpiio && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpiio.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,mpiio.so -o mpiio.so CMakeFiles/mpiio.dir/mpiio.cpp.o ../../EspressoCore.so ../../../config/EspressoConfig.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Built target mpiio /usr/bin/make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/shapes /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/shapes /builddir/build/BUILD/espresso/openmpi/src/core/shapes/CMakeFiles/Shapes.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/core/shapes/CMakeFiles/Shapes.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/core/shapes/CMakeFiles/Shapes.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/core/shapes/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/core/shapes/CMakeFiles/Shapes.dir/depend.internal". Scanning dependencies of target Shapes make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Cylinder.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/Cylinder.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Cylinder.cpp [ 49%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Ellipsoid.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/Ellipsoid.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Ellipsoid.cpp [ 49%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/HollowCone.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/HollowCone.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/HollowCone.cpp [ 49%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Rhomboid.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/Rhomboid.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Rhomboid.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/SimplePore.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/SimplePore.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/SimplePore.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Slitpore.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/Slitpore.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Slitpore.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Sphere.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/Sphere.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Sphere.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/SpheroCylinder.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/SpheroCylinder.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/SpheroCylinder.cpp [ 50%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Stomatocyte.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/Stomatocyte.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Stomatocyte.cpp [ 52%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Torus.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/Torus.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Torus.cpp [ 52%] Building CXX object src/core/shapes/CMakeFiles/Shapes.dir/Wall.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -DShapes_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/Shapes.dir/Wall.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Wall.cpp [ 52%] Linking CXX shared library Shapes.so cd /builddir/build/BUILD/espresso/openmpi/src/core/shapes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Shapes.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,Shapes.so -o Shapes.so CMakeFiles/Shapes.dir/Cylinder.cpp.o CMakeFiles/Shapes.dir/Ellipsoid.cpp.o CMakeFiles/Shapes.dir/HollowCone.cpp.o CMakeFiles/Shapes.dir/Rhomboid.cpp.o CMakeFiles/Shapes.dir/SimplePore.cpp.o CMakeFiles/Shapes.dir/Slitpore.cpp.o CMakeFiles/Shapes.dir/Sphere.cpp.o CMakeFiles/Shapes.dir/SpheroCylinder.cpp.o CMakeFiles/Shapes.dir/Stomatocyte.cpp.o CMakeFiles/Shapes.dir/Torus.cpp.o CMakeFiles/Shapes.dir/Wall.cpp.o ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 52%] Built target Shapes /usr/bin/make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/cluster_analysis /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis /builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend.internal". Scanning dependencies of target cluster_analysis make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 53%] Building CXX object src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/Cluster.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Dcluster_analysis_EXPORTS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/cluster_analysis.dir/Cluster.cpp.o -c /builddir/build/BUILD/espresso/src/core/cluster_analysis/Cluster.cpp [ 53%] Building CXX object src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/ClusterStructure.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Dcluster_analysis_EXPORTS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/cluster_analysis.dir/ClusterStructure.cpp.o -c /builddir/build/BUILD/espresso/src/core/cluster_analysis/ClusterStructure.cpp [ 53%] Linking CXX shared library cluster_analysis.so cd 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CMakeFiles/cluster_analysis.dir/Cluster.cpp.o CMakeFiles/cluster_analysis.dir/ClusterStructure.cpp.o ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/pdbparser make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 53%] Built target cluster_analysis /usr/bin/make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/script_interface /builddir/build/BUILD/espresso/openmpi 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/collision_detection/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/collision_detection/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/constraints/initialize.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core 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-DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/constraints/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/constraints/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/cluster_analysis/initialize.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/cluster_analysis/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/cluster_analysis/initialize.cpp [ 55%] Building CXX object 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/lbboundaries/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/lbboundaries/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/virtual_sites/initialize.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src 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-Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/virtual_sites/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/virtual_sites/initialize.cpp [ 55%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/observables/initialize.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio 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-c /builddir/build/BUILD/espresso/src/script_interface/observables/initialize.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/pair_criteria/initialize.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem 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-DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/mpiio/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/mpiio/initialize.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/ScriptInterfaceBase.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/ScriptInterfaceBase.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/ScriptInterfaceBase.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/shapes/initialize.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/shapes/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/shapes/initialize.cpp [ 57%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/ParallelScriptInterface.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/ParallelScriptInterface.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/ParallelScriptInterface.cpp [ 58%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/h5md/initialize.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/h5md/initialize.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/h5md/initialize.cpp [ 58%] Building CXX object src/script_interface/CMakeFiles/EspressoScriptInterface.dir/h5md/h5md.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/c++ -DEspressoScriptInterface_EXPORTS -DH5XX_USE_MPI -DR123_USE_MULHILO64_C99 -I/builddir/build/BUILD/espresso/src -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/core/io/writer/SYSTEM -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -isystem /builddir/build/BUILD/espresso/libs/h5xx -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -o CMakeFiles/EspressoScriptInterface.dir/h5md/h5md.cpp.o -c /builddir/build/BUILD/espresso/src/script_interface/h5md/h5md.cpp [ 58%] Linking CXX shared library EspressoScriptInterface.so cd /builddir/build/BUILD/espresso/openmpi/src/script_interface && /usr/bin/cmake -E cmake_link_script CMakeFiles/EspressoScriptInterface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,EspressoScriptInterface.so -o EspressoScriptInterface.so CMakeFiles/EspressoScriptInterface.dir/accumulators/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/collision_detection/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/constraints/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/cluster_analysis/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/lbboundaries/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/virtual_sites/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/observables/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/pair_criteria/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/mpiio/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/ScriptInterfaceBase.cpp.o CMakeFiles/EspressoScriptInterface.dir/shapes/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/ParallelScriptInterface.cpp.o CMakeFiles/EspressoScriptInterface.dir/h5md/initialize.cpp.o CMakeFiles/EspressoScriptInterface.dir/h5md/h5md.cpp.o ../core/shapes/Shapes.so ../core/cluster_analysis/cluster_analysis.so ../core/io/mpiio/mpiio.so ../core/io/reader/pdbreader.so ../core/io/writer/H5mdCore.so ../core/EspressoCore.so ../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libhdf5.so /usr/lib/libsz.so /usr/lib/libz.so /usr/lib/libdl.so /usr/lib/libm.so /usr/lib/libboost_filesystem.so make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Built target EspressoScriptInterface /usr/bin/make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/object_in_fluid /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend.internal". Scanning dependencies of target object_in_fluid make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/__init__.py /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid//__init__.py cd /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_classes.py /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid//oif_classes.py cd /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_utils.py /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid//oif_utils.py make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Built target object_in_fluid /usr/bin/make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Generating gen_pxiconfig.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/python3 /builddir/build/BUILD/espresso/src/python/espressomd/gen_pxiconfig.py /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/gen_pxiconfig.cpp Reading definitions from /builddir/build/BUILD/espresso/src/config/features.def... Done. Writing /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/gen_pxiconfig.cpp... Done. cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend.internal". Scanning dependencies of target gen_pxiconfig make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Building CXX object src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/gen_pxiconfig.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/gen_pxiconfig.dir/gen_pxiconfig.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/gen_pxiconfig.cpp [ 58%] Linking CXX executable gen_pxiconfig cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/gen_pxiconfig.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gen_pxiconfig.dir/gen_pxiconfig.cpp.o -o gen_pxiconfig ../../config/EspressoConfig.so make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Built target gen_pxiconfig /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Generating myconfig.pxi cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && ./gen_pxiconfig > /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/myconfig.pxi [ 60%] Generating polymer.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/polymer.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/polymer.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend.internal". Scanning dependencies of target espressomd_polymer make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 60%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_polymer.dir/polymer.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_polymer_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_polymer.dir/polymer.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/polymer.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/polymer.cpp:8876:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 8876 | }; | ^ [ 60%] Linking CXX shared library polymer.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_polymer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,polymer.so -o polymer.so CMakeFiles/espressomd_polymer.dir/polymer.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 60%] Built target espressomd_polymer /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 61%] Generating visualization_opengl.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/visualization_opengl.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend.internal". Scanning dependencies of target espressomd_visualization_opengl make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 61%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/visualization_opengl.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_visualization_opengl_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_visualization_opengl.dir/visualization_opengl.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78058:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78058 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78160:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78160 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78274:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78274 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78388:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78388 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78494:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78494 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78601:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78601 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78715:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78715 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78817:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78817 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:78924:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 78924 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:79045:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 79045 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:87660:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 87660 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_opengl.cpp:90954:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 90954 | }; | ^ [ 61%] Linking CXX shared library visualization_opengl.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_visualization_opengl.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,visualization_opengl.so -o visualization_opengl.so CMakeFiles/espressomd_visualization_opengl.dir/visualization_opengl.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 61%] Built target espressomd_visualization_opengl /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Generating thermostat.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/thermostat.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/thermostat.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend.internal". Scanning dependencies of target espressomd_thermostat make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/thermostat.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_thermostat_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_thermostat.dir/thermostat.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/thermostat.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/thermostat.cpp:11993:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11993 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/thermostat.cpp:12100:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12100 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/thermostat.cpp:12214:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12214 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/thermostat.cpp:14646:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 14646 | }; | ^ [ 63%] Linking CXX shared library thermostat.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_thermostat.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,thermostat.so -o thermostat.so CMakeFiles/espressomd_thermostat.dir/thermostat.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Built target espressomd_thermostat /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Generating system.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/system.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/system.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_system.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_system.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_system.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_system.dir/depend.internal". Scanning dependencies of target espressomd_system make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_system.dir/system.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_system_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_system.dir/system.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/system.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/system.cpp:17584:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 17584 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/system.cpp:22553:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 22553 | }; | ^ [ 63%] Linking CXX shared library system.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_system.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,system.so -o system.so CMakeFiles/espressomd_system.dir/system.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Built target espressomd_system /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Generating visualization_mayavi.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/visualization_mayavi.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_mayavi.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend.internal". Scanning dependencies of target espressomd_visualization_mayavi make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/visualization_mayavi.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_visualization_mayavi_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_visualization_mayavi.dir/visualization_mayavi.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_mayavi.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_mayavi.cpp:10845:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10845 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_mayavi.cpp:10959:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10959 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization_mayavi.cpp:13624:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 13624 | }; | ^ [ 63%] Linking CXX shared library visualization_mayavi.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_visualization_mayavi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,visualization_mayavi.so -o visualization_mayavi.so CMakeFiles/espressomd_visualization_mayavi.dir/visualization_mayavi.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Built target espressomd_visualization_mayavi /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Generating scafacos.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/scafacos.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/scafacos.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend.internal". Scanning dependencies of target espressomd_scafacos make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/scafacos.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_scafacos_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_scafacos.dir/scafacos.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/scafacos.cpp [ 65%] Linking CXX shared library scafacos.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_scafacos.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,scafacos.so -o scafacos.so CMakeFiles/espressomd_scafacos.dir/scafacos.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 65%] Built target espressomd_scafacos /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 65%] Generating globals.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/globals.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/globals.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_globals.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_globals.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend.internal". Scanning dependencies of target espressomd_globals make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 65%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_globals.dir/globals.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_globals_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_globals.dir/globals.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/globals.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/globals.cpp:6695:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 6695 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/globals.cpp:9418:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 9418 | }; | ^ [ 66%] Linking CXX shared library globals.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_globals.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,globals.so -o globals.so CMakeFiles/espressomd_globals.dir/globals.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 66%] Built target espressomd_globals /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 66%] Generating diamond.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/diamond.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/diamond.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend.internal". Scanning dependencies of target espressomd_diamond make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 66%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_diamond.dir/diamond.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_diamond_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_diamond.dir/diamond.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/diamond.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/diamond.cpp:7225:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7225 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/diamond.cpp:10690:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10690 | }; | ^ [ 68%] Linking CXX shared library diamond.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_diamond.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,diamond.so -o diamond.so CMakeFiles/espressomd_diamond.dir/diamond.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 68%] Built target espressomd_diamond /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 68%] Generating _init.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/_init.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/_init.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd__init.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd__init.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd__init.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd__init.dir/depend.internal". Scanning dependencies of target espressomd__init make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 68%] Building CXX object src/python/espressomd/CMakeFiles/espressomd__init.dir/_init.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd__init_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd__init.dir/_init.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/_init.cpp [ 69%] Linking CXX shared library _init.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd__init.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,_init.so -o _init.so CMakeFiles/espressomd__init.dir/_init.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 69%] Built target espressomd__init /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 69%] Generating magnetostatics.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/magnetostatics.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatics.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend.internal". Scanning dependencies of target espressomd_magnetostatics make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 71%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/magnetostatics.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_magnetostatics_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_magnetostatics.dir/magnetostatics.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatics.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatics.cpp:11660:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11660 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatics.cpp:11746:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11746 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatics.cpp:11825:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11825 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatics.cpp:16155:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 16155 | }; | ^ [ 71%] Linking CXX shared library magnetostatics.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_magnetostatics.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,magnetostatics.so -o magnetostatics.so CMakeFiles/espressomd_magnetostatics.dir/magnetostatics.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 71%] Built target espressomd_magnetostatics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 71%] Generating collision_detection.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/collision_detection.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/collision_detection.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend.internal". Scanning dependencies of target espressomd_collision_detection make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 71%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/collision_detection.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_collision_detection_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_collision_detection.dir/collision_detection.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/collision_detection.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/collision_detection.cpp:7163:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7163 | }; | ^ [ 71%] Linking CXX shared library collision_detection.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_collision_detection.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,collision_detection.so -o collision_detection.so CMakeFiles/espressomd_collision_detection.dir/collision_detection.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 73%] Built target espressomd_collision_detection /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 73%] Generating profiler.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/profiler.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/profiler.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend.internal". Scanning dependencies of target espressomd_profiler make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 73%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_profiler.dir/profiler.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_profiler_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/profiler/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_profiler.dir/profiler.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/profiler.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/profiler.cpp:2350:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 2350 | }; | ^ [ 73%] Linking CXX shared library profiler.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_profiler.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,profiler.so -o profiler.so CMakeFiles/espressomd_profiler.dir/profiler.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Built target espressomd_profiler /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Generating electrokinetics.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/electrokinetics.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrokinetics.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend.internal". Scanning dependencies of target espressomd_electrokinetics make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/electrokinetics.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_electrokinetics_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_electrokinetics.dir/electrokinetics.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrokinetics.cpp [ 74%] Linking CXX shared library electrokinetics.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_electrokinetics.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,electrokinetics.so -o electrokinetics.so CMakeFiles/espressomd_electrokinetics.dir/electrokinetics.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Built target espressomd_electrokinetics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Generating particle_data.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/particle_data.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend.internal". Scanning dependencies of target espressomd_particle_data make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/particle_data.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_particle_data_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_particle_data.dir/particle_data.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:30439:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30439 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:30605:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30605 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:30747:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30747 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:30854:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30854 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:30956:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 30956 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:31070:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31070 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:31184:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31184 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:31291:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31291 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:31393:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31393 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:31491:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31491 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:31589:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 31589 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:37361:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 37361 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/particle_data.cpp:40070:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 40070 | }; | ^ [ 74%] Linking CXX shared library particle_data.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_particle_data.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,particle_data.so -o particle_data.so CMakeFiles/espressomd_particle_data.dir/particle_data.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Built target espressomd_particle_data /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Generating reaction_ensemble.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/reaction_ensemble.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/reaction_ensemble.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend.internal". Scanning dependencies of target espressomd_reaction_ensemble make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 76%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/reaction_ensemble.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_reaction_ensemble_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_reaction_ensemble.dir/reaction_ensemble.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/reaction_ensemble.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/reaction_ensemble.cpp:10616:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10616 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/reaction_ensemble.cpp:10705:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10705 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/reaction_ensemble.cpp:10810:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10810 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/reaction_ensemble.cpp:10914:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10914 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/reaction_ensemble.cpp:11008:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11008 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/reaction_ensemble.cpp:15717:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15717 | }; | ^ [ 76%] Linking CXX shared library reaction_ensemble.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_reaction_ensemble.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,reaction_ensemble.so -o reaction_ensemble.so CMakeFiles/espressomd_reaction_ensemble.dir/reaction_ensemble.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 76%] Built target espressomd_reaction_ensemble /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 76%] Generating cuda_init.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/cuda_init.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/cuda_init.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend.internal". Scanning dependencies of target espressomd_cuda_init make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 77%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/cuda_init.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_cuda_init_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_cuda_init.dir/cuda_init.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/cuda_init.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/cuda_init.cpp:2187:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 2187 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/cuda_init.cpp:4385:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 4385 | }; | ^ [ 77%] Linking CXX shared library cuda_init.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_cuda_init.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,cuda_init.so -o cuda_init.so CMakeFiles/espressomd_cuda_init.dir/cuda_init.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 77%] Built target espressomd_cuda_init /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 79%] Generating analyze.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/analyze.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/analyze.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend.internal". Scanning dependencies of target espressomd_analyze make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 79%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_analyze.dir/analyze.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_analyze_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_analyze.dir/analyze.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/analyze.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/analyze.cpp:28903:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 28903 | }; | ^ [ 79%] Linking CXX shared library analyze.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_analyze.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,analyze.so -o analyze.so CMakeFiles/espressomd_analyze.dir/analyze.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 79%] Built target espressomd_analyze /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 79%] Generating cellsystem.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/cellsystem.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/cellsystem.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend.internal". Scanning dependencies of target espressomd_cellsystem make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 79%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/cellsystem.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_cellsystem_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_cellsystem.dir/cellsystem.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/cellsystem.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/cellsystem.cpp:9417:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 9417 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/cellsystem.cpp:12535:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12535 | }; | ^ [ 79%] Linking CXX shared library cellsystem.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_cellsystem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,cellsystem.so -o cellsystem.so CMakeFiles/espressomd_cellsystem.dir/cellsystem.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 80%] Built target espressomd_cellsystem /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 80%] Generating actors.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/actors.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/actors.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_actors.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_actors.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend.internal". Scanning dependencies of target espressomd_actors make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 80%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_actors.dir/actors.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_actors_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_actors.dir/actors.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/actors.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/actors.cpp:7631:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7631 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/actors.cpp:7737:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7737 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/actors.cpp:11469:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11469 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/actors.cpp:13355:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 13355 | }; | ^ [ 80%] Linking CXX shared library actors.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_actors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,actors.so -o actors.so CMakeFiles/espressomd_actors.dir/actors.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 80%] Built target espressomd_actors /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 82%] Generating code_info.pyx cd /builddir/build/BUILD/espresso/src/python/espressomd && /usr/bin/python3 gen_code_info.py /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/code_info.pyx Reading definitions from /builddir/build/BUILD/espresso/src/config/features.def... Done. Writing /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/code_info.pyx... Done. [ 82%] Generating code_info.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/code_info.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/code_info.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend.internal". Scanning dependencies of target espressomd_code_info make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 82%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_code_info.dir/code_info.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_code_info_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_code_info.dir/code_info.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/code_info.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/code_info.cpp:2890:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 2890 | }; | ^ [ 82%] Linking CXX shared library code_info.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_code_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,code_info.so -o code_info.so CMakeFiles/espressomd_code_info.dir/code_info.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 82%] Built target espressomd_code_info /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 82%] Generating electrostatics.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/electrostatics.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend.internal". Scanning dependencies of target espressomd_electrostatics make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 82%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/electrostatics.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_electrostatics_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_electrostatics.dir/electrostatics.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:17957:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 17957 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:18037:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18037 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:18117:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18117 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:18198:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18198 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:18279:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18279 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:18359:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18359 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:18473:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18473 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:18575:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18575 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:24109:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 24109 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatics.cpp:26567:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 26567 | }; | ^ [ 82%] Linking CXX shared library electrostatics.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_electrostatics.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,electrostatics.so -o electrostatics.so CMakeFiles/espressomd_electrostatics.dir/electrostatics.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 84%] Built target espressomd_electrostatics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 84%] Generating script_interface.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/script_interface.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/script_interface.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend.internal". Scanning dependencies of target espressomd_script_interface make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 84%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/script_interface.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_script_interface_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_script_interface.dir/script_interface.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/script_interface.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/script_interface.cpp:11778:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11778 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/script_interface.cpp:11870:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11870 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/script_interface.cpp:11984:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11984 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/script_interface.cpp:12094:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12094 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/script_interface.cpp:16204:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 16204 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/script_interface.cpp:18918:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18918 | }; | ^ [ 85%] Linking CXX shared library script_interface.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_script_interface.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,script_interface.so -o script_interface.so CMakeFiles/espressomd_script_interface.dir/script_interface.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 85%] Built target espressomd_script_interface /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 85%] Generating magnetostatic_extensions.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/magnetostatic_extensions.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatic_extensions.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend.internal". Scanning dependencies of target espressomd_magnetostatic_extensions make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 85%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/magnetostatic_extensions.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_magnetostatic_extensions_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_magnetostatic_extensions.dir/magnetostatic_extensions.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatic_extensions.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/magnetostatic_extensions.cpp:7539:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 7539 | }; | ^ [ 85%] Linking CXX shared library magnetostatic_extensions.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_magnetostatic_extensions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,magnetostatic_extensions.so -o magnetostatic_extensions.so CMakeFiles/espressomd_magnetostatic_extensions.dir/magnetostatic_extensions.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 87%] Built target espressomd_magnetostatic_extensions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 87%] Generating galilei.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/galilei.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/galilei.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend.internal". Scanning dependencies of target espressomd_galilei make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 88%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_galilei.dir/galilei.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_galilei_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_galilei.dir/galilei.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/galilei.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/galilei.cpp:5439:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 5439 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/galilei.cpp:8088:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 8088 | }; | ^ [ 88%] Linking CXX shared library galilei.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_galilei.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,galilei.so -o galilei.so CMakeFiles/espressomd_galilei.dir/galilei.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 88%] Built target espressomd_galilei /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 88%] Generating version.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/version.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/version.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_version.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_version.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_version.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_version.dir/depend.internal". Scanning dependencies of target espressomd_version make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_version.dir/version.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_version_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_version.dir/version.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/version.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/version.cpp:3120:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 3120 | }; | ^ [ 90%] Linking CXX shared library version.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_version.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,version.so -o version.so CMakeFiles/espressomd_version.dir/version.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Built target espressomd_version /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Generating integrate.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/integrate.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/integrate.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend.internal". Scanning dependencies of target espressomd_integrate make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_integrate.dir/integrate.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_integrate_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_integrate.dir/integrate.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/integrate.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/integrate.cpp:6929:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 6929 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/integrate.cpp:10261:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10261 | }; | ^ [ 90%] Linking CXX shared library integrate.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_integrate.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,integrate.so -o integrate.so CMakeFiles/espressomd_integrate.dir/integrate.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Built target espressomd_integrate /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Generating visualization.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/visualization.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend.internal". Scanning dependencies of target espressomd_visualization make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_visualization.dir/visualization.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_visualization_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_visualization.dir/visualization.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/visualization.cpp:4156:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 4156 | }; | ^ [ 92%] Linking CXX shared library visualization.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_visualization.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,visualization.so -o visualization.so CMakeFiles/espressomd_visualization.dir/visualization.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 92%] Built target espressomd_visualization /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 92%] Generating minimize_energy.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/minimize_energy.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/minimize_energy.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend.internal". Scanning dependencies of target espressomd_minimize_energy make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 92%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/minimize_energy.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_minimize_energy_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_minimize_energy.dir/minimize_energy.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/minimize_energy.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/minimize_energy.cpp:6453:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 6453 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/minimize_energy.cpp:9311:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 9311 | }; | ^ [ 93%] Linking CXX shared library minimize_energy.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_minimize_energy.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,minimize_energy.so -o minimize_energy.so CMakeFiles/espressomd_minimize_energy.dir/minimize_energy.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 93%] Built target espressomd_minimize_energy /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 95%] Generating electrostatic_extensions.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/electrostatic_extensions.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatic_extensions.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend.internal". Scanning dependencies of target espressomd_electrostatic_extensions make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 95%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/electrostatic_extensions.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_electrostatic_extensions_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_electrostatic_extensions.dir/electrostatic_extensions.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatic_extensions.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatic_extensions.cpp:10975:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 10975 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatic_extensions.cpp:11056:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11056 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatic_extensions.cpp:11138:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11138 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/electrostatic_extensions.cpp:14570:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 14570 | }; | ^ [ 95%] Linking CXX shared library electrostatic_extensions.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_electrostatic_extensions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,electrostatic_extensions.so -o electrostatic_extensions.so CMakeFiles/espressomd_electrostatic_extensions.dir/electrostatic_extensions.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 95%] Built target espressomd_electrostatic_extensions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 96%] Generating interactions.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/interactions.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend.internal". Scanning dependencies of target espressomd_interactions make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 96%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_interactions.dir/interactions.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_interactions_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_interactions.dir/interactions.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52186:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52186 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52276:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52276 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52366:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52366 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52456:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52456 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52546:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52546 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52636:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52636 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52726:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52726 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52816:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52816 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52906:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52906 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:52996:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 52996 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:53086:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53086 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:53176:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53176 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:53292:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53292 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:53411:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53411 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:53497:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53497 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:53611:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53611 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:53725:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53725 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:53823:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 53823 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:68266:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 68266 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/interactions.cpp:72002:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 72002 | }; | ^ [ 96%] Linking CXX shared library interactions.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_interactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,interactions.so -o interactions.so CMakeFiles/espressomd_interactions.dir/interactions.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 96%] Built target espressomd_interactions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 98%] Generating lb.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/lb.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_lb.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_lb.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend.internal". Scanning dependencies of target espressomd_lb make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 98%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_lb.dir/lb.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_lb_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_lb.dir/lb.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp:15017:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15017 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp:15090:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15090 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp:15281:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15281 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp:15399:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15399 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp:15506:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15506 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp:15608:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15608 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp:19525:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 19525 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/lb.cpp:21955:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 21955 | }; | ^ [ 98%] Linking CXX shared library lb.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_lb.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,lb.so -o lb.so CMakeFiles/espressomd_lb.dir/lb.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 98%] Built target espressomd_lb /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 98%] Generating utils.cpp cd /builddir/build/BUILD/espresso/openmpi/src/python && /usr/bin/cython -3 --cplus --directive embedsignature=True --directive binding=True -I /builddir/build/BUILD/espresso/src/python/espressomd -I /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/src/python/espressomd/utils.pyx -o /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_utils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_utils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend.internal". Scanning dependencies of target espressomd_utils make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' [ 98%] Building CXX object src/python/espressomd/CMakeFiles/espressomd_utils.dir/utils.cpp.o cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -Despressomd_utils_EXPORTS -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/openmpi/src/config -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/python3.8 -isystem /usr/lib/python3.8/site-packages/numpy/core/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fPIC -pthread -std=c++14 -Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -o CMakeFiles/espressomd_utils.dir/utils.cpp.o -c /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp:11615:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11615 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp:11717:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11717 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp:11819:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11819 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp:11921:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 11921 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp:12023:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12023 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp:12137:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 12137 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp:15420:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 15420 | }; | ^ /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/utils.cpp:18288:1: warning: missing initializer for member '_typeobject::tp_print' [-Wmissing-field-initializers] 18288 | }; | ^ [ 98%] Linking CXX shared library utils.so cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E cmake_link_script CMakeFiles/espressomd_utils.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,utils.so -o utils.so CMakeFiles/espressomd_utils.dir/utils.cpp.o ../../script_interface/EspressoScriptInterface.so ../../core/shapes/Shapes.so ../../core/cluster_analysis/cluster_analysis.so ../../core/io/mpiio/mpiio.so ../../core/io/reader/pdbreader.so ../../core/EspressoCore.so ../../config/EspressoConfig.so /usr/lib/openmpi/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/openmpi/src/core/io/writer:/usr/lib/openmpi/lib make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [100%] Built target espressomd_utils /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd.dir/depend.internal". Scanning dependencies of target espressomd make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__cinit__.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//__cinit__.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__init__.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//__init__.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/accumulators.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//accumulators.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/checkpointing.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//checkpointing.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/cluster_analysis.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//cluster_analysis.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/comfixed.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//comfixed.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/constraints.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//constraints.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/drude_helpers.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//drude_helpers.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/ekboundaries.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//ekboundaries.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_code_info.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//gen_code_info.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_pxiconfig.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//gen_pxiconfig.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/highlander.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//highlander.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/lbboundaries.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//lbboundaries.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/observables.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//observables.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/pair_criteria.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//pair_criteria.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/shapes.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//shapes.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/virtual_sites.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//virtual_sites.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/io/__init__.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/io/__init__.py make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [100%] Built target espressomd /usr/bin/make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python /builddir/build/BUILD/espresso/openmpi/src/python/CMakeFiles/pypresso.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/CMakeFiles/pypresso.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/CMakeFiles/pypresso.dir/depend.internal". Dependee "/builddir/build/BUILD/espresso/openmpi/src/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/espresso/openmpi/src/python/CMakeFiles/pypresso.dir/depend.internal". Scanning dependencies of target pypresso make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/CMakeFiles/pypresso.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [100%] Built target pypresso make[1]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/openmpi/CMakeFiles 0 + popd ~/build/BUILD/espresso + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.MvbgMq + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386 ++ dirname /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386 + cd espresso + for mpi in mpich openmpi + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386 'INSTALL=/usr/bin/install -p' -C mpich make: Entering directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/cmake -S/builddir/build/BUILD/espresso -B/builddir/build/BUILD/espresso/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/mpich/CMakeFiles /builddir/build/BUILD/espresso/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/pdbparser /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/pdbparser /builddir/build/BUILD/espresso/mpich/src/pdbparser/CMakeFiles/pdbparser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/pdbparser/CMakeFiles/pdbparser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 1%] Built target pdbparser /usr/bin/make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/generate_config_features.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/config/CMakeFiles/generate_config_features.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Built target generate_config_features /usr/bin/make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/CMakeFiles/myconfig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'CMakeFiles/myconfig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Built target myconfig /usr/bin/make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/check_myconfig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/config && /usr/bin/python3 /builddir/build/BUILD/espresso/src/config/check_myconfig.py /usr/bin/c++ /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/mpich/src/config/myconfig-final.hpp cmake_config.hpp make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Built target check_myconfig /usr/bin/make -f src/config/CMakeFiles/EspressoConfig.dir/build.make src/config/CMakeFiles/EspressoConfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/EspressoConfig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/config/CMakeFiles/EspressoConfig.dir/build.make src/config/CMakeFiles/EspressoConfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/config/CMakeFiles/EspressoConfig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 3%] Built target EspressoConfig /usr/bin/make -f src/core/CMakeFiles/EspressoCore.dir/build.make src/core/CMakeFiles/EspressoCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core /builddir/build/BUILD/espresso/mpich/src/core/CMakeFiles/EspressoCore.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/CMakeFiles/EspressoCore.dir/build.make src/core/CMakeFiles/EspressoCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/core/CMakeFiles/EspressoCore.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 47%] Built target EspressoCore /usr/bin/make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/writer /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/writer /builddir/build/BUILD/espresso/mpich/src/core/io/writer/CMakeFiles/H5mdCore.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/core/io/writer/CMakeFiles/H5mdCore.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Built target H5mdCore /usr/bin/make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/reader /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/reader /builddir/build/BUILD/espresso/mpich/src/core/io/reader/CMakeFiles/pdbreader.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/core/io/reader/CMakeFiles/pdbreader.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Built target pdbreader /usr/bin/make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/mpiio /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/mpiio /builddir/build/BUILD/espresso/mpich/src/core/io/mpiio/CMakeFiles/mpiio.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/core/io/mpiio/CMakeFiles/mpiio.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Built target mpiio /usr/bin/make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/shapes /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/shapes /builddir/build/BUILD/espresso/mpich/src/core/shapes/CMakeFiles/Shapes.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/core/shapes/CMakeFiles/Shapes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 52%] Built target Shapes /usr/bin/make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/cluster_analysis /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Built target cluster_analysis /usr/bin/make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/script_interface /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/script_interface /builddir/build/BUILD/espresso/mpich/src/script_interface/CMakeFiles/EspressoScriptInterface.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Built target EspressoScriptInterface /usr/bin/make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/object_in_fluid /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//__init__.py cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_classes.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//oif_classes.py cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_utils.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//oif_utils.py make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Built target object_in_fluid /usr/bin/make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Built target gen_pxiconfig /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 60%] Built target espressomd_polymer /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Built target espressomd_visualization_opengl /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Built target espressomd_thermostat /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_system.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_system.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Built target espressomd_system /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Built target espressomd_visualization_mayavi /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 65%] Built target espressomd_scafacos /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_globals.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_globals.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 66%] Built target espressomd_globals /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 68%] Built target espressomd_diamond /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd__init.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd__init.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 69%] Built target espressomd__init /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target espressomd_magnetostatics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 73%] Built target espressomd_collision_detection /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_profiler /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_electrokinetics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_particle_data /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 76%] Built target espressomd_reaction_ensemble /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 77%] Built target espressomd_cuda_init /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 79%] Built target espressomd_analyze /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 80%] Built target espressomd_cellsystem /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_actors.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_actors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 80%] Built target espressomd_actors /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Built target espressomd_code_info /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 84%] Built target espressomd_electrostatics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 85%] Built target espressomd_script_interface /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 87%] Built target espressomd_magnetostatic_extensions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 88%] Built target espressomd_galilei /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_version.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_version.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Built target espressomd_version /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Built target espressomd_integrate /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 92%] Built target espressomd_visualization /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 93%] Built target espressomd_minimize_energy /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 95%] Built target espressomd_electrostatic_extensions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 96%] Built target espressomd_interactions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_lb.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_lb.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 98%] Built target espressomd_lb /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_utils.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_utils.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target espressomd_utils /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__cinit__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//__cinit__.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//__init__.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/accumulators.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//accumulators.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/checkpointing.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//checkpointing.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/cluster_analysis.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//cluster_analysis.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/comfixed.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//comfixed.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/constraints.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//constraints.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/drude_helpers.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//drude_helpers.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/ekboundaries.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//ekboundaries.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_code_info.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//gen_code_info.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_pxiconfig.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//gen_pxiconfig.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/highlander.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//highlander.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/lbboundaries.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//lbboundaries.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/observables.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//observables.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/pair_criteria.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//pair_criteria.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/shapes.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//shapes.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/virtual_sites.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//virtual_sites.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/io/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd/io/__init__.py make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target espressomd /usr/bin/make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python /builddir/build/BUILD/espresso/mpich/src/python/CMakeFiles/pypresso.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[2]: Nothing to be done for 'src/python/CMakeFiles/pypresso.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target pypresso make[1]: Leaving directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/mpich/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/espresso/mpich' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoCore.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/H5mdCore.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/pdbreader.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/mpiio.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/Shapes.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cluster_analysis.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoConfig.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/pdbparser.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoScriptInterface.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/_init.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/actors.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/analyze.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cellsystem.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/collision_detection.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cuda_init.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/diamond.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrokinetics.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrostatic_extensions.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrostatics.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/galilei.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/globals.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/integrate.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/interactions.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/lb.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/magnetostatic_extensions.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/magnetostatics.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/minimize_energy.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/particle_data.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/polymer.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/profiler.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/reaction_ensemble.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/scafacos.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/script_interface.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/system.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/thermostat.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/utils.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/version.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization_mayavi.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization_opengl.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/code_info.so -- Up-to-date: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/shapes.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/virtual_sites.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/gen_pxiconfig.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/highlander.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/comfixed.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/drude_helpers.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/__cinit__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/__init__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/checkpointing.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/pair_criteria.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cluster_analysis.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/MDA_ESP -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/MDA_ESP/__init__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io/mpiio.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io/__init__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io/writer -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io/writer/h5md.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io/writer/__init__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io/writer/CMakeFiles -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io/writer/vtf.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/io/CMakeFiles -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/lbboundaries.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/observables.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_collision_detection.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_profiler.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_interactions.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_scafacos.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_visualization.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_polymer.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_integrate.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_thermostat.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_cellsystem.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_code_info.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_actors.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_globals.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_utils.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_diamond.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_particle_data.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_minimize_energy.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_electrokinetics.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_cuda_init.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd__init.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/gen_pxiconfig.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_analyze.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_system.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_galilei.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_magnetostatics.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_lb.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_script_interface.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_visualization_opengl.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_electrostatics.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/CMakeFiles/espressomd_version.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/accumulators.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/gen_code_info.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/ekboundaries.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/constraints.py make: Leaving directory '/builddir/build/BUILD/espresso/mpich' + module unload mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash unload mpi/mpich-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + for mpi in mpich openmpi + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvb3Blbm1waS1pMzg2IixbImZ1bGxOYW1lIl09Im1waS9vcGVubXBpLWkzODYiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJtcGkvb3Blbm1waS1pMzg2Iix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFyZS9tb2R1;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386 'INSTALL=/usr/bin/install -p' -C openmpi make: Entering directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/espresso -B/builddir/build/BUILD/espresso/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/openmpi/CMakeFiles /builddir/build/BUILD/espresso/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/pdbparser /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/pdbparser /builddir/build/BUILD/espresso/openmpi/src/pdbparser/CMakeFiles/pdbparser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/pdbparser/CMakeFiles/pdbparser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 1%] Built target pdbparser /usr/bin/make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/config /builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/generate_config_features.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/config/CMakeFiles/generate_config_features.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 3%] Built target generate_config_features /usr/bin/make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/CMakeFiles/myconfig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'CMakeFiles/myconfig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 3%] Built target myconfig /usr/bin/make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/config /builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/check_myconfig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi/src/config && /usr/bin/python3 /builddir/build/BUILD/espresso/src/config/check_myconfig.py /usr/bin/c++ /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/openmpi/src/config/myconfig-final.hpp cmake_config.hpp make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 3%] Built target check_myconfig /usr/bin/make -f src/config/CMakeFiles/EspressoConfig.dir/build.make src/config/CMakeFiles/EspressoConfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/config /builddir/build/BUILD/espresso/openmpi/src/config/CMakeFiles/EspressoConfig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/config/CMakeFiles/EspressoConfig.dir/build.make src/config/CMakeFiles/EspressoConfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/config/CMakeFiles/EspressoConfig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 3%] Built target EspressoConfig /usr/bin/make -f src/core/CMakeFiles/EspressoCore.dir/build.make src/core/CMakeFiles/EspressoCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core /builddir/build/BUILD/espresso/openmpi/src/core/CMakeFiles/EspressoCore.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/CMakeFiles/EspressoCore.dir/build.make src/core/CMakeFiles/EspressoCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/core/CMakeFiles/EspressoCore.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 47%] Built target EspressoCore /usr/bin/make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/writer /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/io/writer /builddir/build/BUILD/espresso/openmpi/src/core/io/writer/CMakeFiles/H5mdCore.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/core/io/writer/CMakeFiles/H5mdCore.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Built target H5mdCore /usr/bin/make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/reader /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/io/reader /builddir/build/BUILD/espresso/openmpi/src/core/io/reader/CMakeFiles/pdbreader.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/core/io/reader/CMakeFiles/pdbreader.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Built target pdbreader /usr/bin/make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/mpiio /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/io/mpiio /builddir/build/BUILD/espresso/openmpi/src/core/io/mpiio/CMakeFiles/mpiio.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/core/io/mpiio/CMakeFiles/mpiio.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 49%] Built target mpiio /usr/bin/make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/shapes /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/shapes /builddir/build/BUILD/espresso/openmpi/src/core/shapes/CMakeFiles/Shapes.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/core/shapes/CMakeFiles/Shapes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 52%] Built target Shapes /usr/bin/make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/cluster_analysis /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis /builddir/build/BUILD/espresso/openmpi/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 53%] Built target cluster_analysis /usr/bin/make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/script_interface /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/script_interface /builddir/build/BUILD/espresso/openmpi/src/script_interface/CMakeFiles/EspressoScriptInterface.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Built target EspressoScriptInterface /usr/bin/make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/object_in_fluid /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/__init__.py /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid//__init__.py cd /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_classes.py /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid//oif_classes.py cd /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_utils.py /builddir/build/BUILD/espresso/openmpi/src/python/object_in_fluid//oif_utils.py make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Built target object_in_fluid /usr/bin/make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 58%] Built target gen_pxiconfig /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 60%] Built target espressomd_polymer /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 61%] Built target espressomd_visualization_opengl /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Built target espressomd_thermostat /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_system.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_system.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Built target espressomd_system /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 63%] Built target espressomd_visualization_mayavi /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 65%] Built target espressomd_scafacos /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_globals.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_globals.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 66%] Built target espressomd_globals /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 68%] Built target espressomd_diamond /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd__init.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd__init.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 69%] Built target espressomd__init /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 71%] Built target espressomd_magnetostatics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 73%] Built target espressomd_collision_detection /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Built target espressomd_profiler /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Built target espressomd_electrokinetics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 74%] Built target espressomd_particle_data /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 76%] Built target espressomd_reaction_ensemble /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 77%] Built target espressomd_cuda_init /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 79%] Built target espressomd_analyze /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 80%] Built target espressomd_cellsystem /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_actors.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_actors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 80%] Built target espressomd_actors /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 82%] Built target espressomd_code_info /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 84%] Built target espressomd_electrostatics /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 85%] Built target espressomd_script_interface /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 87%] Built target espressomd_magnetostatic_extensions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 88%] Built target espressomd_galilei /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_version.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_version.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Built target espressomd_version /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 90%] Built target espressomd_integrate /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 92%] Built target espressomd_visualization /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 93%] Built target espressomd_minimize_energy /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 95%] Built target espressomd_electrostatic_extensions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 96%] Built target espressomd_interactions /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_lb.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_lb.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [ 98%] Built target espressomd_lb /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd_utils.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_utils.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [100%] Built target espressomd_utils /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python/espressomd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/CMakeFiles/espressomd.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__cinit__.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//__cinit__.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__init__.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//__init__.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/accumulators.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//accumulators.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/checkpointing.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//checkpointing.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/cluster_analysis.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//cluster_analysis.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/comfixed.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//comfixed.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/constraints.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//constraints.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/drude_helpers.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//drude_helpers.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/ekboundaries.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//ekboundaries.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_code_info.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//gen_code_info.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_pxiconfig.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//gen_pxiconfig.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/highlander.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//highlander.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/lbboundaries.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//lbboundaries.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/observables.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//observables.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/pair_criteria.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//pair_criteria.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/shapes.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//shapes.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/virtual_sites.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd//virtual_sites.py cd /builddir/build/BUILD/espresso/openmpi/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/io/__init__.py /builddir/build/BUILD/espresso/openmpi/src/python/espressomd/io/__init__.py make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [100%] Built target espressomd /usr/bin/make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/depend make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' cd /builddir/build/BUILD/espresso/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python /builddir/build/BUILD/espresso/openmpi /builddir/build/BUILD/espresso/openmpi/src/python /builddir/build/BUILD/espresso/openmpi/src/python/CMakeFiles/pypresso.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/build make[2]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[2]: Nothing to be done for 'src/python/CMakeFiles/pypresso.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' [100%] Built target pypresso make[1]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/openmpi/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/espresso/openmpi' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/espresso/openmpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoCore.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/H5mdCore.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/pdbreader.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/mpiio.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/Shapes.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cluster_analysis.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoConfig.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/pdbparser.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoScriptInterface.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/_init.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/actors.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/analyze.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cellsystem.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/collision_detection.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cuda_init.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/diamond.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrokinetics.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrostatic_extensions.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrostatics.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/galilei.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/globals.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/integrate.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/interactions.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/lb.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/magnetostatic_extensions.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/magnetostatics.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/minimize_energy.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/particle_data.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/polymer.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/profiler.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/reaction_ensemble.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/scafacos.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/script_interface.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/system.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/thermostat.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/utils.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/version.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization_mayavi.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization_opengl.so -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/code_info.so -- Up-to-date: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/shapes.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/virtual_sites.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/gen_pxiconfig.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/highlander.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/comfixed.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/drude_helpers.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/__cinit__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/__init__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/checkpointing.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/pair_criteria.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cluster_analysis.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/MDA_ESP -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/MDA_ESP/__init__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io/mpiio.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io/__init__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io/writer -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io/writer/h5md.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io/writer/__init__.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io/writer/CMakeFiles -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io/writer/vtf.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/io/CMakeFiles -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/lbboundaries.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/observables.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_collision_detection.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_profiler.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_interactions.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_scafacos.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_visualization.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_polymer.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_integrate.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_thermostat.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_cellsystem.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_code_info.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_actors.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_globals.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_utils.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_diamond.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_particle_data.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_minimize_energy.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_electrokinetics.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_cuda_init.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd__init.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/gen_pxiconfig.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_analyze.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_system.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_galilei.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_magnetostatics.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_lb.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_script_interface.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_visualization_opengl.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_electrostatics.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/CMakeFiles/espressomd_version.dir -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/accumulators.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/gen_code_info.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/ekboundaries.py -- Installing: /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/constraints.py make: Leaving directory '/builddir/build/BUILD/espresso/openmpi' + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 4.1.0-1.fc32 --unique-debug-suffix -4.1.0-1.fc32.i386 --unique-debug-src-base espresso-4.1.0-1.fc32.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/espresso explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoScriptInterface.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/Shapes.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoConfig.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/H5mdCore.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoCore.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoConfig.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoScriptInterface.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/Shapes.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/_init.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/EspressoCore.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/H5mdCore.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/_init.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/actors.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/actors.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/analyze.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/analyze.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cellsystem.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cellsystem.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cluster_analysis.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cluster_analysis.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/code_info.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/code_info.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/collision_detection.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/collision_detection.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cuda_init.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/cuda_init.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/diamond.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/diamond.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrokinetics.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrokinetics.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrostatic_extensions.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrostatic_extensions.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrostatics.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/electrostatics.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/galilei.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/galilei.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/globals.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/globals.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/integrate.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/integrate.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/interactions.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/interactions.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/lb.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/lb.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/magnetostatic_extensions.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/magnetostatic_extensions.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/magnetostatics.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/magnetostatics.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/minimize_energy.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/minimize_energy.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/mpiio.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/mpiio.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/particle_data.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/particle_data.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/pdbparser.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/pdbparser.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/pdbreader.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/pdbreader.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/polymer.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/polymer.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/profiler.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/profiler.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/reaction_ensemble.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/reaction_ensemble.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/scafacos.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/scafacos.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/script_interface.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/script_interface.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/system.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/system.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/thermostat.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/thermostat.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/utils.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/utils.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/version.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/version.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization_mayavi.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization_mayavi.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization_opengl.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd/visualization_opengl.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoConfig.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoConfig.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoCore.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoCore.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoScriptInterface.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/EspressoScriptInterface.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/H5mdCore.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/H5mdCore.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/Shapes.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/Shapes.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/_init.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/_init.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/actors.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/actors.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/analyze.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/analyze.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cellsystem.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cellsystem.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cluster_analysis.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cluster_analysis.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/code_info.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/code_info.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/collision_detection.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/collision_detection.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cuda_init.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/diamond.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/cuda_init.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/diamond.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrokinetics.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrokinetics.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrostatic_extensions.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrostatic_extensions.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrostatics.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/electrostatics.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/galilei.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/galilei.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/globals.so extracting debug info from 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/builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/lb.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/magnetostatic_extensions.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/magnetostatic_extensions.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/magnetostatics.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/magnetostatics.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/minimize_energy.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/minimize_energy.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/mpiio.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/particle_data.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/mpiio.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/particle_data.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/pdbparser.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/pdbparser.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/pdbreader.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/pdbreader.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/polymer.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/polymer.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/profiler.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/profiler.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/reaction_ensemble.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/reaction_ensemble.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/scafacos.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/scafacos.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/script_interface.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/script_interface.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/system.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/thermostat.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/thermostat.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/system.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/utils.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/utils.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/version.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/version.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization_mayavi.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization_mayavi.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization_opengl.so extracting debug info from /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/openmpi/espressomd/visualization_opengl.so original debug info size: 398888kB, size after compression: 326136kB /usr/lib/rpm/sepdebugcrcfix: Updated 82 CRC32s, 0 CRC32s did match. 106829 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8 using /usr/bin/python3.8 Bytecompiling .py files below /builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/debug/usr/lib/python3.8 using /usr/bin/python3.8 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.5JL1Lp + umask 022 + cd /builddir/build/BUILD + cd espresso + for mpi in mpich openmpi + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod bash load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + LD_LIBRARY_PATH=/usr/lib/mpich/lib:/builddir/build/BUILDROOT/espresso-4.1.0-1.fc32.i386/usr/lib/python3.8/site-packages/mpich/espressomd + make -C mpich check CTEST_OUTPUT_ON_FAILURE=1 make: Entering directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/cmake -S/builddir/build/BUILD/espresso -B/builddir/build/BUILD/espresso/mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/espresso/mpich' /usr/bin/cmake -S/builddir/build/BUILD/espresso -B/builddir/build/BUILD/espresso/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/espresso/mpich/CMakeFiles 91 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/espresso/mpich' make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/pdbparser /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/pdbparser /builddir/build/BUILD/espresso/mpich/src/pdbparser/CMakeFiles/pdbparser.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/pdbparser/CMakeFiles/pdbparser.dir/build.make src/pdbparser/CMakeFiles/pdbparser.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/pdbparser/CMakeFiles/pdbparser.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 1%] Built target pdbparser make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/generate_config_features.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/config/CMakeFiles/generate_config_features.dir/build.make src/config/CMakeFiles/generate_config_features.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/config/CMakeFiles/generate_config_features.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 2%] Built target generate_config_features make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/CMakeFiles/myconfig.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f CMakeFiles/myconfig.dir/build.make CMakeFiles/myconfig.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'CMakeFiles/myconfig.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 2%] Built target myconfig make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/check_myconfig.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/config/CMakeFiles/check_myconfig.dir/build.make src/config/CMakeFiles/check_myconfig.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/config && /usr/bin/python3 /builddir/build/BUILD/espresso/src/config/check_myconfig.py /usr/bin/c++ /builddir/build/BUILD/espresso/src/config/features.def /builddir/build/BUILD/espresso/mpich/src/config/myconfig-final.hpp cmake_config.hpp make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 2%] Built target check_myconfig make -f src/config/CMakeFiles/EspressoConfig.dir/build.make src/config/CMakeFiles/EspressoConfig.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/config /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/config /builddir/build/BUILD/espresso/mpich/src/config/CMakeFiles/EspressoConfig.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/config/CMakeFiles/EspressoConfig.dir/build.make src/config/CMakeFiles/EspressoConfig.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/config/CMakeFiles/EspressoConfig.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 2%] Built target EspressoConfig make -f src/pdbparser/unit_tests/CMakeFiles/PdbParser_test.dir/build.make src/pdbparser/unit_tests/CMakeFiles/PdbParser_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/pdbparser/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/pdbparser/unit_tests /builddir/build/BUILD/espresso/mpich/src/pdbparser/unit_tests/CMakeFiles/PdbParser_test.dir/DependInfo.cmake --color= Scanning dependencies of target PdbParser_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/pdbparser/unit_tests/CMakeFiles/PdbParser_test.dir/build.make src/pdbparser/unit_tests/CMakeFiles/PdbParser_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 2%] Building CXX object src/pdbparser/unit_tests/CMakeFiles/PdbParser_test.dir/PdbParser_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/pdbparser/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/pdbparser/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/PdbParser_test.dir/PdbParser_test.cpp.o -c /builddir/build/BUILD/espresso/src/pdbparser/unit_tests/PdbParser_test.cpp [ 2%] Linking CXX executable PdbParser_test cd /builddir/build/BUILD/espresso/mpich/src/pdbparser/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/PdbParser_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/PdbParser_test.dir/PdbParser_test.cpp.o -o PdbParser_test /usr/lib/libboost_unit_test_framework.so ../pdbparser.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 2%] Built target PdbParser_test make -f src/core/CMakeFiles/EspressoCore.dir/build.make src/core/CMakeFiles/EspressoCore.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core /builddir/build/BUILD/espresso/mpich/src/core/CMakeFiles/EspressoCore.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/CMakeFiles/EspressoCore.dir/build.make src/core/CMakeFiles/EspressoCore.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/core/CMakeFiles/EspressoCore.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 32%] Built target EspressoCore make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/writer /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/writer /builddir/build/BUILD/espresso/mpich/src/core/io/writer/CMakeFiles/H5mdCore.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/io/writer/CMakeFiles/H5mdCore.dir/build.make src/core/io/writer/CMakeFiles/H5mdCore.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/core/io/writer/CMakeFiles/H5mdCore.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 34%] Built target H5mdCore make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/reader /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/reader /builddir/build/BUILD/espresso/mpich/src/core/io/reader/CMakeFiles/pdbreader.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/io/reader/CMakeFiles/pdbreader.dir/build.make src/core/io/reader/CMakeFiles/pdbreader.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/core/io/reader/CMakeFiles/pdbreader.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 34%] Built target pdbreader make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/io/mpiio /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/io/mpiio /builddir/build/BUILD/espresso/mpich/src/core/io/mpiio/CMakeFiles/mpiio.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/io/mpiio/CMakeFiles/mpiio.dir/build.make src/core/io/mpiio/CMakeFiles/mpiio.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/core/io/mpiio/CMakeFiles/mpiio.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 34%] Built target mpiio make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/shapes /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/shapes /builddir/build/BUILD/espresso/mpich/src/core/shapes/CMakeFiles/Shapes.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/shapes/CMakeFiles/Shapes.dir/build.make src/core/shapes/CMakeFiles/Shapes.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/core/shapes/CMakeFiles/Shapes.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 36%] Built target Shapes make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/cluster_analysis /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis /builddir/build/BUILD/espresso/mpich/src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build.make src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/core/cluster_analysis/CMakeFiles/cluster_analysis.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 37%] Built target cluster_analysis make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/script_interface /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/script_interface /builddir/build/BUILD/espresso/mpich/src/script_interface/CMakeFiles/EspressoScriptInterface.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build.make src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/script_interface/CMakeFiles/EspressoScriptInterface.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 40%] Built target EspressoScriptInterface make -f src/core/unit_tests/CMakeFiles/ParallelScriptInterface_test.dir/build.make src/core/unit_tests/CMakeFiles/ParallelScriptInterface_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/ParallelScriptInterface_test.dir/DependInfo.cmake --color= Scanning dependencies of target ParallelScriptInterface_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/ParallelScriptInterface_test.dir/build.make src/core/unit_tests/CMakeFiles/ParallelScriptInterface_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 40%] Building CXX object src/core/unit_tests/CMakeFiles/ParallelScriptInterface_test.dir/ParallelScriptInterface_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/ParallelScriptInterface_test.dir/ParallelScriptInterface_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/ParallelScriptInterface_test.cpp [ 40%] Linking CXX executable ParallelScriptInterface_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ParallelScriptInterface_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/ParallelScriptInterface_test.dir/ParallelScriptInterface_test.cpp.o -o ParallelScriptInterface_test /usr/lib/libboost_unit_test_framework.so ../../script_interface/EspressoScriptInterface.so /usr/lib/mpich/lib/libboost_mpi.so ../shapes/Shapes.so ../cluster_analysis/cluster_analysis.so ../io/mpiio/mpiio.so ../io/reader/pdbreader.so ../EspressoCore.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so ../../config/EspressoConfig.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 40%] Built target ParallelScriptInterface_test make -f src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/build.make src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/DependInfo.cmake --color= Scanning dependencies of target RuntimeError_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/build.make src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 40%] Building CXX object src/core/unit_tests/CMakeFiles/RuntimeError_test.dir/RuntimeError_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/RuntimeError_test.dir/RuntimeError_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/RuntimeError_test.cpp [ 40%] Linking CXX executable RuntimeError_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/RuntimeError_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/RuntimeError_test.dir/RuntimeError_test.cpp.o -o RuntimeError_test /usr/lib/libboost_unit_test_framework.so /usr/lib/libboost_serialization.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 40%] Built target RuntimeError_test make -f src/core/unit_tests/CMakeFiles/ParticleIterator_test.dir/build.make src/core/unit_tests/CMakeFiles/ParticleIterator_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/ParticleIterator_test.dir/DependInfo.cmake --color= Scanning dependencies of target ParticleIterator_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/ParticleIterator_test.dir/build.make src/core/unit_tests/CMakeFiles/ParticleIterator_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 40%] Building CXX object src/core/unit_tests/CMakeFiles/ParticleIterator_test.dir/ParticleIterator_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/ParticleIterator_test.dir/ParticleIterator_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/ParticleIterator_test.cpp [ 40%] Linking CXX executable ParticleIterator_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ParticleIterator_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ParticleIterator_test.dir/ParticleIterator_test.cpp.o -o ParticleIterator_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 40%] Built target ParticleIterator_test make -f src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/build.make src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/DependInfo.cmake --color= Scanning dependencies of target RuntimeErrorCollector_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/build.make src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 41%] Building CXX object src/core/unit_tests/CMakeFiles/RuntimeErrorCollector_test.dir/RuntimeErrorCollector_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/RuntimeErrorCollector_test.dir/RuntimeErrorCollector_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/RuntimeErrorCollector_test.cpp [ 41%] Linking CXX executable RuntimeErrorCollector_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/RuntimeErrorCollector_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/RuntimeErrorCollector_test.dir/RuntimeErrorCollector_test.cpp.o -o RuntimeErrorCollector_test /usr/lib/libboost_unit_test_framework.so ../EspressoCore.so /usr/lib/mpich/lib/libboost_mpi.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so /usr/lib/libboost_serialization.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 41%] Built target RuntimeErrorCollector_test make -f src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/build.make src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/DependInfo.cmake --color= Scanning dependencies of target MpiCallbacks_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/build.make src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 41%] Building CXX object src/core/unit_tests/CMakeFiles/MpiCallbacks_test.dir/MpiCallbacks_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/MpiCallbacks_test.dir/MpiCallbacks_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/MpiCallbacks_test.cpp [ 41%] Linking CXX executable MpiCallbacks_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/MpiCallbacks_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/MpiCallbacks_test.dir/MpiCallbacks_test.cpp.o -o MpiCallbacks_test /usr/lib/libboost_unit_test_framework.so /usr/lib/mpich/lib/libboost_mpi.so ../../config/EspressoConfig.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 41%] Built target MpiCallbacks_test make -f src/core/unit_tests/CMakeFiles/ScriptInterface_test.dir/build.make src/core/unit_tests/CMakeFiles/ScriptInterface_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/ScriptInterface_test.dir/DependInfo.cmake --color= Scanning dependencies of target ScriptInterface_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/ScriptInterface_test.dir/build.make src/core/unit_tests/CMakeFiles/ScriptInterface_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 41%] Building CXX object src/core/unit_tests/CMakeFiles/ScriptInterface_test.dir/ScriptInterface_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/ScriptInterface_test.dir/ScriptInterface_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/ScriptInterface_test.cpp [ 42%] Linking CXX executable ScriptInterface_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptInterface_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/ScriptInterface_test.dir/ScriptInterface_test.cpp.o -o ScriptInterface_test /usr/lib/libboost_unit_test_framework.so ../../script_interface/EspressoScriptInterface.so ../shapes/Shapes.so ../cluster_analysis/cluster_analysis.so ../io/mpiio/mpiio.so ../io/reader/pdbreader.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 42%] Built target ScriptInterface_test make -f src/core/unit_tests/CMakeFiles/Variant_test.dir/build.make src/core/unit_tests/CMakeFiles/Variant_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/Variant_test.dir/DependInfo.cmake --color= Scanning dependencies of target Variant_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/Variant_test.dir/build.make src/core/unit_tests/CMakeFiles/Variant_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 42%] Building CXX object src/core/unit_tests/CMakeFiles/Variant_test.dir/Variant_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Variant_test.dir/Variant_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/Variant_test.cpp [ 42%] Linking CXX executable Variant_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Variant_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/Variant_test.dir/Variant_test.cpp.o -o Variant_test /usr/lib/libboost_unit_test_framework.so ../../script_interface/EspressoScriptInterface.so ../shapes/Shapes.so ../cluster_analysis/cluster_analysis.so ../io/mpiio/mpiio.so ../io/reader/pdbreader.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 42%] Built target Variant_test make -f src/core/unit_tests/CMakeFiles/AutoParameter_test.dir/build.make src/core/unit_tests/CMakeFiles/AutoParameter_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/AutoParameter_test.dir/DependInfo.cmake --color= Scanning dependencies of target AutoParameter_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/AutoParameter_test.dir/build.make src/core/unit_tests/CMakeFiles/AutoParameter_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 43%] Building CXX object src/core/unit_tests/CMakeFiles/AutoParameter_test.dir/AutoParameter_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/AutoParameter_test.dir/AutoParameter_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/AutoParameter_test.cpp [ 43%] Linking CXX executable AutoParameter_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/AutoParameter_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/AutoParameter_test.dir/AutoParameter_test.cpp.o -o AutoParameter_test /usr/lib/libboost_unit_test_framework.so ../../script_interface/EspressoScriptInterface.so ../shapes/Shapes.so ../cluster_analysis/cluster_analysis.so ../io/mpiio/mpiio.so ../io/reader/pdbreader.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 43%] Built target AutoParameter_test make -f src/core/unit_tests/CMakeFiles/Wall_test.dir/build.make src/core/unit_tests/CMakeFiles/Wall_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/Wall_test.dir/DependInfo.cmake --color= Scanning dependencies of target Wall_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/Wall_test.dir/build.make src/core/unit_tests/CMakeFiles/Wall_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 43%] Building CXX object src/core/unit_tests/CMakeFiles/Wall_test.dir/Wall_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Wall_test.dir/Wall_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/Wall_test.cpp [ 43%] Building CXX object src/core/unit_tests/CMakeFiles/Wall_test.dir/__/shapes/Wall.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Wall_test.dir/__/shapes/Wall.cpp.o -c /builddir/build/BUILD/espresso/src/core/shapes/Wall.cpp [ 43%] Linking CXX executable Wall_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wall_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/Wall_test.dir/Wall_test.cpp.o CMakeFiles/Wall_test.dir/__/shapes/Wall.cpp.o -o Wall_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 43%] Built target Wall_test make -f src/core/unit_tests/CMakeFiles/link_cell_test.dir/build.make src/core/unit_tests/CMakeFiles/link_cell_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/link_cell_test.dir/DependInfo.cmake --color= Scanning dependencies of target link_cell_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/link_cell_test.dir/build.make src/core/unit_tests/CMakeFiles/link_cell_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 45%] Building CXX object src/core/unit_tests/CMakeFiles/link_cell_test.dir/link_cell_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/link_cell_test.dir/link_cell_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/link_cell_test.cpp [ 45%] Linking CXX executable link_cell_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/link_cell_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/link_cell_test.dir/link_cell_test.cpp.o -o link_cell_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 45%] Built target link_cell_test make -f src/core/unit_tests/CMakeFiles/field_coupling_force_field.dir/build.make src/core/unit_tests/CMakeFiles/field_coupling_force_field.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/field_coupling_force_field.dir/DependInfo.cmake --color= Scanning dependencies of target field_coupling_force_field make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/field_coupling_force_field.dir/build.make src/core/unit_tests/CMakeFiles/field_coupling_force_field.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 45%] Building CXX object src/core/unit_tests/CMakeFiles/field_coupling_force_field.dir/field_coupling_force_field_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/field_coupling_force_field.dir/field_coupling_force_field_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/field_coupling_force_field_test.cpp [ 46%] Linking CXX executable field_coupling_force_field cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/field_coupling_force_field.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/field_coupling_force_field.dir/field_coupling_force_field_test.cpp.o -o field_coupling_force_field /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 46%] Built target field_coupling_force_field make -f src/core/unit_tests/CMakeFiles/verlet_ia_test.dir/build.make src/core/unit_tests/CMakeFiles/verlet_ia_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/verlet_ia_test.dir/DependInfo.cmake --color= Scanning dependencies of target verlet_ia_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/verlet_ia_test.dir/build.make src/core/unit_tests/CMakeFiles/verlet_ia_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 46%] Building CXX object src/core/unit_tests/CMakeFiles/verlet_ia_test.dir/verlet_ia_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/verlet_ia_test.dir/verlet_ia_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/verlet_ia_test.cpp [ 47%] Linking CXX executable verlet_ia_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/verlet_ia_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/verlet_ia_test.dir/verlet_ia_test.cpp.o -o verlet_ia_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 47%] Built target verlet_ia_test make -f src/core/unit_tests/CMakeFiles/LocalBox_test.dir/build.make src/core/unit_tests/CMakeFiles/LocalBox_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/LocalBox_test.dir/DependInfo.cmake --color= Scanning dependencies of target LocalBox_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/LocalBox_test.dir/build.make src/core/unit_tests/CMakeFiles/LocalBox_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 47%] Building CXX object src/core/unit_tests/CMakeFiles/LocalBox_test.dir/LocalBox_test.cpp.o cd 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-fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/LocalBox_test.dir/LocalBox_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/LocalBox_test.cpp [ 48%] Linking CXX executable LocalBox_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/LocalBox_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/LocalBox_test.dir/LocalBox_test.cpp.o -o LocalBox_test /usr/lib/libboost_unit_test_framework.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 48%] Built target LocalBox_test make -f src/core/unit_tests/CMakeFiles/field_coupling_fields.dir/build.make src/core/unit_tests/CMakeFiles/field_coupling_fields.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/field_coupling_fields.dir/DependInfo.cmake --color= Scanning dependencies of target field_coupling_fields make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/field_coupling_fields.dir/build.make src/core/unit_tests/CMakeFiles/field_coupling_fields.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 48%] Building CXX object src/core/unit_tests/CMakeFiles/field_coupling_fields.dir/field_coupling_fields_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/field_coupling_fields.dir/field_coupling_fields_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/field_coupling_fields_test.cpp [ 48%] Linking CXX executable field_coupling_fields cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/field_coupling_fields.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/field_coupling_fields.dir/field_coupling_fields_test.cpp.o -o field_coupling_fields /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 48%] Built target field_coupling_fields make -f src/core/unit_tests/CMakeFiles/None_test.dir/build.make src/core/unit_tests/CMakeFiles/None_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/None_test.dir/DependInfo.cmake --color= Scanning dependencies of target None_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/None_test.dir/build.make src/core/unit_tests/CMakeFiles/None_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 48%] Building CXX object src/core/unit_tests/CMakeFiles/None_test.dir/None_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/None_test.dir/None_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/None_test.cpp [ 48%] Linking CXX executable None_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/None_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/None_test.dir/None_test.cpp.o -o None_test /usr/lib/libboost_unit_test_framework.so ../../script_interface/EspressoScriptInterface.so ../shapes/Shapes.so ../cluster_analysis/cluster_analysis.so ../io/mpiio/mpiio.so ../io/reader/pdbreader.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 48%] Built target None_test make -f src/core/unit_tests/CMakeFiles/Ellipsoid_test.dir/build.make src/core/unit_tests/CMakeFiles/Ellipsoid_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/Ellipsoid_test.dir/DependInfo.cmake --color= Scanning dependencies of target Ellipsoid_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/Ellipsoid_test.dir/build.make src/core/unit_tests/CMakeFiles/Ellipsoid_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Building CXX object src/core/unit_tests/CMakeFiles/Ellipsoid_test.dir/Ellipsoid_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/Ellipsoid_test.dir/Ellipsoid_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/Ellipsoid_test.cpp [ 49%] Linking CXX executable Ellipsoid_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Ellipsoid_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/Ellipsoid_test.dir/Ellipsoid_test.cpp.o -o Ellipsoid_test /usr/lib/libboost_unit_test_framework.so ../shapes/Shapes.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Built target Ellipsoid_test make -f src/core/unit_tests/CMakeFiles/ParticleCache_test.dir/build.make src/core/unit_tests/CMakeFiles/ParticleCache_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/ParticleCache_test.dir/DependInfo.cmake --color= Scanning dependencies of target ParticleCache_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/ParticleCache_test.dir/build.make src/core/unit_tests/CMakeFiles/ParticleCache_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 49%] Building CXX object src/core/unit_tests/CMakeFiles/ParticleCache_test.dir/ParticleCache_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/ParticleCache_test.dir/ParticleCache_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/ParticleCache_test.cpp [ 50%] Linking CXX executable ParticleCache_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ParticleCache_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/ParticleCache_test.dir/ParticleCache_test.cpp.o -o ParticleCache_test /usr/lib/libboost_unit_test_framework.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 50%] Built target ParticleCache_test make -f src/core/unit_tests/CMakeFiles/Particle_test.dir/build.make src/core/unit_tests/CMakeFiles/Particle_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/Particle_test.dir/DependInfo.cmake --color= Scanning dependencies of target Particle_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/Particle_test.dir/build.make src/core/unit_tests/CMakeFiles/Particle_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 50%] Building CXX object src/core/unit_tests/CMakeFiles/Particle_test.dir/Particle_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Particle_test.dir/Particle_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/Particle_test.cpp [ 51%] Linking CXX executable Particle_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Particle_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/Particle_test.dir/Particle_test.cpp.o -o Particle_test /usr/lib/libboost_unit_test_framework.so /usr/lib/libboost_serialization.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 51%] Built target Particle_test make -f src/core/unit_tests/CMakeFiles/get_value.dir/build.make src/core/unit_tests/CMakeFiles/get_value.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/get_value.dir/DependInfo.cmake --color= Scanning dependencies of target get_value make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/get_value.dir/build.make src/core/unit_tests/CMakeFiles/get_value.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 51%] Building CXX object src/core/unit_tests/CMakeFiles/get_value.dir/get_value_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/get_value.dir/get_value_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/get_value_test.cpp [ 51%] Linking CXX executable get_value cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/get_value.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/get_value.dir/get_value_test.cpp.o -o get_value /usr/lib/libboost_unit_test_framework.so ../../script_interface/EspressoScriptInterface.so ../shapes/Shapes.so ../cluster_analysis/cluster_analysis.so ../io/mpiio/mpiio.so ../io/reader/pdbreader.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 51%] Built target get_value make -f src/core/unit_tests/CMakeFiles/field_coupling_couplings.dir/build.make src/core/unit_tests/CMakeFiles/field_coupling_couplings.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/field_coupling_couplings.dir/DependInfo.cmake --color= Scanning dependencies of target field_coupling_couplings make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/field_coupling_couplings.dir/build.make src/core/unit_tests/CMakeFiles/field_coupling_couplings.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 51%] Building CXX object src/core/unit_tests/CMakeFiles/field_coupling_couplings.dir/field_coupling_couplings_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/field_coupling_couplings.dir/field_coupling_couplings_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/field_coupling_couplings_test.cpp [ 52%] Linking CXX executable field_coupling_couplings cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/field_coupling_couplings.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/field_coupling_couplings.dir/field_coupling_couplings_test.cpp.o -o field_coupling_couplings /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 52%] Built target field_coupling_couplings make -f src/core/unit_tests/CMakeFiles/periodic_fold_test.dir/build.make src/core/unit_tests/CMakeFiles/periodic_fold_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/periodic_fold_test.dir/DependInfo.cmake --color= Scanning dependencies of target periodic_fold_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/periodic_fold_test.dir/build.make src/core/unit_tests/CMakeFiles/periodic_fold_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Building CXX object src/core/unit_tests/CMakeFiles/periodic_fold_test.dir/periodic_fold_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/periodic_fold_test.dir/periodic_fold_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/periodic_fold_test.cpp [ 53%] Linking CXX executable periodic_fold_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/periodic_fold_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/periodic_fold_test.dir/periodic_fold_test.cpp.o -o periodic_fold_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Built target periodic_fold_test make -f src/core/unit_tests/CMakeFiles/grid_test.dir/build.make src/core/unit_tests/CMakeFiles/grid_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/grid_test.dir/DependInfo.cmake --color= Scanning dependencies of target grid_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/grid_test.dir/build.make src/core/unit_tests/CMakeFiles/grid_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Building CXX object src/core/unit_tests/CMakeFiles/grid_test.dir/grid_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/grid_test.dir/grid_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/grid_test.cpp [ 53%] Linking CXX executable grid_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/grid_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/grid_test.dir/grid_test.cpp.o -o grid_test /usr/lib/libboost_unit_test_framework.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Built target grid_test make -f src/core/unit_tests/CMakeFiles/AutoParameters_test.dir/build.make src/core/unit_tests/CMakeFiles/AutoParameters_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/AutoParameters_test.dir/DependInfo.cmake --color= Scanning dependencies of target AutoParameters_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/AutoParameters_test.dir/build.make src/core/unit_tests/CMakeFiles/AutoParameters_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Building CXX object src/core/unit_tests/CMakeFiles/AutoParameters_test.dir/AutoParameters_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/script_interface -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/core/io/mpiio -I/builddir/build/BUILD/espresso/src/core/io/reader -I/builddir/build/BUILD/espresso/src/pdbparser/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/AutoParameters_test.dir/AutoParameters_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/AutoParameters_test.cpp [ 53%] Linking CXX executable AutoParameters_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/AutoParameters_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/AutoParameters_test.dir/AutoParameters_test.cpp.o -o AutoParameters_test /usr/lib/libboost_unit_test_framework.so ../../script_interface/EspressoScriptInterface.so ../shapes/Shapes.so ../cluster_analysis/cluster_analysis.so ../io/mpiio/mpiio.so ../io/reader/pdbreader.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so ../../pdbparser/pdbparser.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/core/io/writer:/usr/lib/mpich/lib make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Built target AutoParameters_test make -f src/core/unit_tests/CMakeFiles/BoxGeometry_test.dir/build.make src/core/unit_tests/CMakeFiles/BoxGeometry_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/core/unit_tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/core/unit_tests /builddir/build/BUILD/espresso/mpich/src/core/unit_tests/CMakeFiles/BoxGeometry_test.dir/DependInfo.cmake --color= Scanning dependencies of target BoxGeometry_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/core/unit_tests/CMakeFiles/BoxGeometry_test.dir/build.make src/core/unit_tests/CMakeFiles/BoxGeometry_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 53%] Building CXX object src/core/unit_tests/CMakeFiles/BoxGeometry_test.dir/BoxGeometry_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/c++ -DR123_USE_MULHILO64_C99 -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -I/builddir/build/BUILD/espresso/src/utils/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/espresso/libs/Random123-1.09/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/BoxGeometry_test.dir/BoxGeometry_test.cpp.o -c /builddir/build/BUILD/espresso/src/core/unit_tests/BoxGeometry_test.cpp [ 54%] Linking CXX executable BoxGeometry_test cd /builddir/build/BUILD/espresso/mpich/src/core/unit_tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/BoxGeometry_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/BoxGeometry_test.dir/BoxGeometry_test.cpp.o -o BoxGeometry_test /usr/lib/libboost_unit_test_framework.so ../EspressoCore.so ../../config/EspressoConfig.so /usr/lib/mpich/lib/libboost_mpi.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so -Wl,-rpath-link,/builddir/build/BUILD/espresso/mpich/src/pdbparser make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 54%] Built target BoxGeometry_test make -f src/utils/tests/CMakeFiles/interpolation.dir/build.make src/utils/tests/CMakeFiles/interpolation.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/interpolation.dir/DependInfo.cmake --color= Scanning dependencies of target interpolation make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/interpolation.dir/build.make src/utils/tests/CMakeFiles/interpolation.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 54%] Building CXX object src/utils/tests/CMakeFiles/interpolation.dir/interpolation_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/interpolation.dir/interpolation_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/interpolation_test.cpp [ 56%] Linking CXX executable interpolation cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/interpolation.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/interpolation.dir/interpolation_test.cpp.o -o interpolation /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 56%] Built target interpolation make -f src/utils/tests/CMakeFiles/keys_test.dir/build.make src/utils/tests/CMakeFiles/keys_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/keys_test.dir/DependInfo.cmake --color= Scanning dependencies of target keys_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/keys_test.dir/build.make src/utils/tests/CMakeFiles/keys_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 56%] Building CXX object src/utils/tests/CMakeFiles/keys_test.dir/keys_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/keys_test.dir/keys_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/keys_test.cpp [ 56%] Linking CXX executable keys_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/keys_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/keys_test.dir/keys_test.cpp.o -o keys_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 56%] Built target keys_test make -f src/utils/tests/CMakeFiles/vec_rotate.dir/build.make src/utils/tests/CMakeFiles/vec_rotate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/vec_rotate.dir/DependInfo.cmake --color= Scanning dependencies of target vec_rotate make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/vec_rotate.dir/build.make src/utils/tests/CMakeFiles/vec_rotate.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 56%] Building CXX object src/utils/tests/CMakeFiles/vec_rotate.dir/vec_rotate_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/vec_rotate.dir/vec_rotate_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/vec_rotate_test.cpp [ 56%] Linking CXX executable vec_rotate cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/vec_rotate.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/vec_rotate.dir/vec_rotate_test.cpp.o -o vec_rotate /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 56%] Built target vec_rotate make -f src/utils/tests/CMakeFiles/sinc.dir/build.make src/utils/tests/CMakeFiles/sinc.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/sinc.dir/DependInfo.cmake --color= Scanning dependencies of target sinc make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/sinc.dir/build.make src/utils/tests/CMakeFiles/sinc.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 56%] Building CXX object src/utils/tests/CMakeFiles/sinc.dir/sinc_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/sinc.dir/sinc_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/sinc_test.cpp [ 56%] Linking CXX executable sinc cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/sinc.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/sinc.dir/sinc_test.cpp.o -o sinc /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 56%] Built target sinc make -f src/utils/tests/CMakeFiles/Span_test.dir/build.make src/utils/tests/CMakeFiles/Span_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/Span_test.dir/DependInfo.cmake --color= Scanning dependencies of target Span_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/Span_test.dir/build.make src/utils/tests/CMakeFiles/Span_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Building CXX object src/utils/tests/CMakeFiles/Span_test.dir/Span_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Span_test.dir/Span_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/Span_test.cpp [ 57%] Linking CXX executable Span_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Span_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/Span_test.dir/Span_test.cpp.o -o Span_test 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src/utils/tests/CMakeFiles/sgn.dir/sgn_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/sgn.dir/sgn_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/sgn_test.cpp [ 57%] Linking CXX executable sgn cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgn.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/sgn.dir/sgn_test.cpp.o -o sgn /usr/lib/libboost_unit_test_framework.so 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src/utils/tests/CMakeFiles/as_const.dir/as_const_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/as_const.dir/as_const_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/as_const_test.cpp [ 57%] Linking CXX executable as_const cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/as_const.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/as_const.dir/as_const_test.cpp.o -o as_const /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Built target as_const make -f src/utils/tests/CMakeFiles/AS_erfc_part.dir/build.make src/utils/tests/CMakeFiles/AS_erfc_part.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/AS_erfc_part.dir/DependInfo.cmake --color= Scanning dependencies of target AS_erfc_part make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/AS_erfc_part.dir/build.make src/utils/tests/CMakeFiles/AS_erfc_part.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Building CXX object src/utils/tests/CMakeFiles/AS_erfc_part.dir/AS_erfc_part_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/AS_erfc_part.dir/AS_erfc_part_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/AS_erfc_part_test.cpp [ 57%] Linking CXX executable AS_erfc_part cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/AS_erfc_part.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/AS_erfc_part.dir/AS_erfc_part_test.cpp.o -o AS_erfc_part /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Built target AS_erfc_part make -f src/utils/tests/CMakeFiles/make_function_test.dir/build.make src/utils/tests/CMakeFiles/make_function_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/make_function_test.dir/DependInfo.cmake --color= Scanning dependencies of target make_function_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/make_function_test.dir/build.make src/utils/tests/CMakeFiles/make_function_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Building CXX object src/utils/tests/CMakeFiles/make_function_test.dir/make_function_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/make_function_test.dir/make_function_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/make_function_test.cpp [ 57%] Linking CXX executable make_function_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/make_function_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/make_function_test.dir/make_function_test.cpp.o -o make_function_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Built target make_function_test make -f src/utils/tests/CMakeFiles/permute_ifield_test.dir/build.make src/utils/tests/CMakeFiles/permute_ifield_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/permute_ifield_test.dir/DependInfo.cmake --color= Scanning dependencies of target permute_ifield_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/permute_ifield_test.dir/build.make src/utils/tests/CMakeFiles/permute_ifield_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Building CXX object src/utils/tests/CMakeFiles/permute_ifield_test.dir/permute_ifield_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/permute_ifield_test.dir/permute_ifield_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/permute_ifield_test.cpp [ 57%] Linking CXX executable permute_ifield_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/permute_ifield_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/permute_ifield_test.dir/permute_ifield_test.cpp.o -o permute_ifield_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Built target permute_ifield_test make -f src/utils/tests/CMakeFiles/int_pow.dir/build.make src/utils/tests/CMakeFiles/int_pow.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/int_pow.dir/DependInfo.cmake --color= Scanning dependencies of target int_pow make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/int_pow.dir/build.make src/utils/tests/CMakeFiles/int_pow.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Building CXX object src/utils/tests/CMakeFiles/int_pow.dir/int_pow_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/int_pow.dir/int_pow_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/int_pow_test.cpp [ 57%] Linking CXX executable int_pow cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/int_pow.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/int_pow.dir/int_pow_test.cpp.o -o int_pow /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Built target int_pow make -f src/utils/tests/CMakeFiles/Factory_test.dir/build.make src/utils/tests/CMakeFiles/Factory_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/Factory_test.dir/DependInfo.cmake --color= Scanning dependencies of target Factory_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/Factory_test.dir/build.make src/utils/tests/CMakeFiles/Factory_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Building CXX object src/utils/tests/CMakeFiles/Factory_test.dir/Factory_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Factory_test.dir/Factory_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/Factory_test.cpp [ 57%] Linking CXX executable Factory_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Factory_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/Factory_test.dir/Factory_test.cpp.o -o Factory_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Built target Factory_test make -f src/utils/tests/CMakeFiles/SkipIterator_test.dir/build.make src/utils/tests/CMakeFiles/SkipIterator_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/SkipIterator_test.dir/DependInfo.cmake --color= Scanning dependencies of target SkipIterator_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/SkipIterator_test.dir/build.make src/utils/tests/CMakeFiles/SkipIterator_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Building CXX object src/utils/tests/CMakeFiles/SkipIterator_test.dir/SkipIterator_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/SkipIterator_test.dir/SkipIterator_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/SkipIterator_test.cpp [ 57%] Linking CXX executable SkipIterator_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/SkipIterator_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/SkipIterator_test.dir/SkipIterator_test.cpp.o -o SkipIterator_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Built target SkipIterator_test make -f src/utils/tests/CMakeFiles/tuple_test.dir/build.make src/utils/tests/CMakeFiles/tuple_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/tuple_test.dir/DependInfo.cmake --color= Scanning dependencies of target tuple_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/tuple_test.dir/build.make src/utils/tests/CMakeFiles/tuple_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 57%] Building CXX object src/utils/tests/CMakeFiles/tuple_test.dir/tuple_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/tuple_test.dir/tuple_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/tuple_test.cpp [ 58%] Linking CXX executable tuple_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tuple_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tuple_test.dir/tuple_test.cpp.o -o tuple_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 58%] Built target tuple_test make -f src/utils/tests/CMakeFiles/NumeratedContainer_test.dir/build.make src/utils/tests/CMakeFiles/NumeratedContainer_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/NumeratedContainer_test.dir/DependInfo.cmake --color= Scanning dependencies of target NumeratedContainer_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/NumeratedContainer_test.dir/build.make src/utils/tests/CMakeFiles/NumeratedContainer_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 59%] Building CXX object src/utils/tests/CMakeFiles/NumeratedContainer_test.dir/NumeratedContainer_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/NumeratedContainer_test.dir/NumeratedContainer_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/NumeratedContainer_test.cpp [ 59%] Linking CXX executable NumeratedContainer_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/NumeratedContainer_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/NumeratedContainer_test.dir/NumeratedContainer_test.cpp.o -o NumeratedContainer_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 59%] Built target NumeratedContainer_test make -f src/utils/tests/CMakeFiles/sampling_test.dir/build.make src/utils/tests/CMakeFiles/sampling_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/sampling_test.dir/DependInfo.cmake --color= Scanning dependencies of target sampling_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/sampling_test.dir/build.make src/utils/tests/CMakeFiles/sampling_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 60%] Building CXX object src/utils/tests/CMakeFiles/sampling_test.dir/sampling_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/sampling_test.dir/sampling_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/sampling_test.cpp [ 60%] Linking CXX executable sampling_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/sampling_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/sampling_test.dir/sampling_test.cpp.o -o sampling_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 60%] Built target sampling_test make -f src/utils/tests/CMakeFiles/abs_test.dir/build.make src/utils/tests/CMakeFiles/abs_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/abs_test.dir/DependInfo.cmake --color= Scanning dependencies of target abs_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/abs_test.dir/build.make src/utils/tests/CMakeFiles/abs_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 60%] Building CXX object src/utils/tests/CMakeFiles/abs_test.dir/abs_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/abs_test.dir/abs_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/abs_test.cpp [ 61%] Linking CXX executable abs_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/abs_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/abs_test.dir/abs_test.cpp.o -o abs_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Built target abs_test make -f src/utils/tests/CMakeFiles/Cache_test.dir/build.make src/utils/tests/CMakeFiles/Cache_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/Cache_test.dir/DependInfo.cmake --color= Scanning dependencies of target Cache_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/Cache_test.dir/build.make src/utils/tests/CMakeFiles/Cache_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Building CXX object src/utils/tests/CMakeFiles/Cache_test.dir/Cache_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Cache_test.dir/Cache_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/Cache_test.cpp [ 61%] Linking CXX executable Cache_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cache_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/Cache_test.dir/Cache_test.cpp.o -o Cache_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Built target Cache_test make -f src/utils/tests/CMakeFiles/List_test.dir/build.make src/utils/tests/CMakeFiles/List_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/List_test.dir/DependInfo.cmake --color= Scanning dependencies of target List_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/List_test.dir/build.make src/utils/tests/CMakeFiles/List_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Building CXX object src/utils/tests/CMakeFiles/List_test.dir/List_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/List_test.dir/List_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/List_test.cpp [ 61%] Linking CXX executable List_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/List_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/List_test.dir/List_test.cpp.o -o List_test /usr/lib/libboost_unit_test_framework.so /usr/lib/libboost_serialization.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 61%] Built target List_test make -f src/utils/tests/CMakeFiles/strcat_alloc.dir/build.make src/utils/tests/CMakeFiles/strcat_alloc.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/strcat_alloc.dir/DependInfo.cmake --color= Scanning dependencies of target strcat_alloc make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/strcat_alloc.dir/build.make src/utils/tests/CMakeFiles/strcat_alloc.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Building CXX object src/utils/tests/CMakeFiles/strcat_alloc.dir/strcat_alloc_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/strcat_alloc.dir/strcat_alloc_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/strcat_alloc_test.cpp [ 62%] Linking CXX executable strcat_alloc cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/strcat_alloc.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/strcat_alloc.dir/strcat_alloc_test.cpp.o -o strcat_alloc /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Built target strcat_alloc make -f src/utils/tests/CMakeFiles/accumulator.dir/build.make src/utils/tests/CMakeFiles/accumulator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/accumulator.dir/DependInfo.cmake --color= Scanning dependencies of target accumulator make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/accumulator.dir/build.make src/utils/tests/CMakeFiles/accumulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Building CXX object src/utils/tests/CMakeFiles/accumulator.dir/accumulator.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/accumulator.dir/accumulator.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/accumulator.cpp [ 62%] Linking CXX executable accumulator cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/accumulator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/accumulator.dir/accumulator.cpp.o -o accumulator /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Built target accumulator make -f src/utils/tests/CMakeFiles/matrix_vector_product.dir/build.make src/utils/tests/CMakeFiles/matrix_vector_product.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/matrix_vector_product.dir/DependInfo.cmake --color= Scanning dependencies of target matrix_vector_product make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/matrix_vector_product.dir/build.make src/utils/tests/CMakeFiles/matrix_vector_product.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Building CXX object src/utils/tests/CMakeFiles/matrix_vector_product.dir/matrix_vector_product.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/matrix_vector_product.dir/matrix_vector_product.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/matrix_vector_product.cpp [ 62%] Linking CXX executable matrix_vector_product cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/matrix_vector_product.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/matrix_vector_product.dir/matrix_vector_product.cpp.o -o matrix_vector_product /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Built target matrix_vector_product make -f src/utils/tests/CMakeFiles/ravel_index.dir/build.make src/utils/tests/CMakeFiles/ravel_index.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/ravel_index.dir/DependInfo.cmake --color= Scanning dependencies of target ravel_index make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/ravel_index.dir/build.make src/utils/tests/CMakeFiles/ravel_index.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Building CXX object src/utils/tests/CMakeFiles/ravel_index.dir/index_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/ravel_index.dir/index_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/index_test.cpp [ 62%] Linking CXX executable ravel_index cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ravel_index.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ravel_index.dir/index_test.cpp.o -o ravel_index /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Built target ravel_index make -f src/utils/tests/CMakeFiles/Array_test.dir/build.make src/utils/tests/CMakeFiles/Array_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/Array_test.dir/DependInfo.cmake --color= Scanning dependencies of target Array_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/Array_test.dir/build.make src/utils/tests/CMakeFiles/Array_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Building CXX object src/utils/tests/CMakeFiles/Array_test.dir/Array_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Array_test.dir/Array_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/Array_test.cpp [ 62%] Linking CXX executable Array_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Array_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/Array_test.dir/Array_test.cpp.o -o Array_test /usr/lib/libboost_unit_test_framework.so /usr/lib/libboost_serialization.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Built target Array_test make -f src/utils/tests/CMakeFiles/for_each_pair_test.dir/build.make src/utils/tests/CMakeFiles/for_each_pair_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/for_each_pair_test.dir/DependInfo.cmake --color= Scanning dependencies of target for_each_pair_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/for_each_pair_test.dir/build.make src/utils/tests/CMakeFiles/for_each_pair_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Building CXX object src/utils/tests/CMakeFiles/for_each_pair_test.dir/for_each_pair_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/for_each_pair_test.dir/for_each_pair_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/for_each_pair_test.cpp [ 62%] Linking CXX executable for_each_pair_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/for_each_pair_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/for_each_pair_test.dir/for_each_pair_test.cpp.o -o for_each_pair_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Built target for_each_pair_test make -f src/utils/tests/CMakeFiles/tensor_product.dir/build.make src/utils/tests/CMakeFiles/tensor_product.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/tensor_product.dir/tensor_product_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/tensor_product_test.cpp [ 62%] Linking CXX executable tensor_product cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor_product.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tensor_product.dir/tensor_product_test.cpp.o -o tensor_product /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 62%] Built target tensor_product make -f src/utils/tests/CMakeFiles/coordinate_transformation_test.dir/build.make src/utils/tests/CMakeFiles/coordinate_transformation_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/coordinate_transformation_test.dir/DependInfo.cmake --color= Scanning dependencies of target coordinate_transformation_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/coordinate_transformation_test.dir/build.make src/utils/tests/CMakeFiles/coordinate_transformation_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Building CXX object src/utils/tests/CMakeFiles/coordinate_transformation_test.dir/coordinate_transformation.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/coordinate_transformation_test.dir/coordinate_transformation.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/coordinate_transformation.cpp [ 63%] Linking CXX executable coordinate_transformation_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinate_transformation_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/coordinate_transformation_test.dir/coordinate_transformation.cpp.o -o coordinate_transformation_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Built target coordinate_transformation_test make -f src/utils/tests/CMakeFiles/Vector_test.dir/build.make src/utils/tests/CMakeFiles/Vector_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/Vector_test.dir/DependInfo.cmake --color= Scanning dependencies of target Vector_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/Vector_test.dir/build.make src/utils/tests/CMakeFiles/Vector_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 63%] Building CXX object src/utils/tests/CMakeFiles/Vector_test.dir/Vector_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Vector_test.dir/Vector_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/Vector_test.cpp [ 64%] Linking CXX executable Vector_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Vector_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/Vector_test.dir/Vector_test.cpp.o -o Vector_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 64%] Built target Vector_test make -f src/utils/tests/CMakeFiles/contains_test.dir/build.make src/utils/tests/CMakeFiles/contains_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/contains_test.dir/DependInfo.cmake --color= Scanning dependencies of target contains_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/contains_test.dir/build.make src/utils/tests/CMakeFiles/contains_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 64%] Building CXX object src/utils/tests/CMakeFiles/contains_test.dir/contains_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/contains_test.dir/contains_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/contains_test.cpp [ 64%] Linking CXX executable contains_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/contains_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/contains_test.dir/contains_test.cpp.o -o contains_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 64%] Built target contains_test make -f src/utils/tests/CMakeFiles/raster_test.dir/build.make src/utils/tests/CMakeFiles/raster_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/raster_test.dir/DependInfo.cmake --color= Scanning dependencies of target raster_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/raster_test.dir/build.make src/utils/tests/CMakeFiles/raster_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 64%] Building CXX object src/utils/tests/CMakeFiles/raster_test.dir/raster_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/raster_test.dir/raster_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/raster_test.cpp [ 65%] Linking CXX executable raster_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/raster_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/raster_test.dir/raster_test.cpp.o -o raster_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 65%] Built target raster_test make -f src/utils/tests/CMakeFiles/interpolation_gradient.dir/build.make src/utils/tests/CMakeFiles/interpolation_gradient.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/interpolation_gradient.dir/DependInfo.cmake --color= Scanning dependencies of target interpolation_gradient make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/interpolation_gradient.dir/build.make src/utils/tests/CMakeFiles/interpolation_gradient.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 65%] Building CXX object src/utils/tests/CMakeFiles/interpolation_gradient.dir/interpolation_gradient_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/interpolation_gradient.dir/interpolation_gradient_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/interpolation_gradient_test.cpp [ 65%] Linking CXX executable interpolation_gradient cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/interpolation_gradient.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/interpolation_gradient.dir/interpolation_gradient_test.cpp.o -o interpolation_gradient /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 65%] Built target interpolation_gradient make -f src/utils/tests/CMakeFiles/sendrecv_test.dir/build.make src/utils/tests/CMakeFiles/sendrecv_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/sendrecv_test.dir/DependInfo.cmake --color= Scanning dependencies of target sendrecv_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/sendrecv_test.dir/build.make src/utils/tests/CMakeFiles/sendrecv_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 65%] Building CXX object src/utils/tests/CMakeFiles/sendrecv_test.dir/sendrecv_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/sendrecv_test.dir/sendrecv_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/sendrecv_test.cpp [ 67%] Linking CXX executable sendrecv_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/sendrecv_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/sendrecv_test.dir/sendrecv_test.cpp.o -o sendrecv_test /usr/lib/libboost_unit_test_framework.so /usr/lib/mpich/lib/libboost_mpi.so ../../config/EspressoConfig.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 67%] Built target sendrecv_test make -f src/utils/tests/CMakeFiles/RunningAverage_test.dir/build.make src/utils/tests/CMakeFiles/RunningAverage_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/RunningAverage_test.dir/DependInfo.cmake --color= Scanning dependencies of target RunningAverage_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/RunningAverage_test.dir/build.make src/utils/tests/CMakeFiles/RunningAverage_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 67%] Building CXX object src/utils/tests/CMakeFiles/RunningAverage_test.dir/RunningAverage_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/RunningAverage_test.dir/RunningAverage_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/RunningAverage_test.cpp [ 67%] Linking CXX executable RunningAverage_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/RunningAverage_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/RunningAverage_test.dir/RunningAverage_test.cpp.o -o RunningAverage_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 67%] Built target RunningAverage_test make -f src/utils/tests/CMakeFiles/gatherv_test.dir/build.make src/utils/tests/CMakeFiles/gatherv_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/gatherv_test.dir/DependInfo.cmake --color= Scanning dependencies of target gatherv_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/gatherv_test.dir/build.make src/utils/tests/CMakeFiles/gatherv_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 68%] Building CXX object src/utils/tests/CMakeFiles/gatherv_test.dir/gatherv_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/gatherv_test.dir/gatherv_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/gatherv_test.cpp [ 68%] Linking CXX executable gatherv_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatherv_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/gatherv_test.dir/gatherv_test.cpp.o -o gatherv_test /usr/lib/libboost_unit_test_framework.so /usr/lib/mpich/lib/libboost_mpi.so ../../config/EspressoConfig.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 68%] Built target gatherv_test make -f src/utils/tests/CMakeFiles/make_lin_space_test.dir/build.make src/utils/tests/CMakeFiles/make_lin_space_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/make_lin_space_test.dir/DependInfo.cmake --color= Scanning dependencies of target make_lin_space_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/make_lin_space_test.dir/build.make src/utils/tests/CMakeFiles/make_lin_space_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 68%] Building CXX object src/utils/tests/CMakeFiles/make_lin_space_test.dir/make_lin_space_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/make_lin_space_test.dir/make_lin_space_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/make_lin_space_test.cpp [ 69%] Linking CXX executable make_lin_space_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/make_lin_space_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/make_lin_space_test.dir/make_lin_space_test.cpp.o -o make_lin_space_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 69%] Built target make_lin_space_test make -f src/utils/tests/CMakeFiles/rotation_matrix_test.dir/build.make src/utils/tests/CMakeFiles/rotation_matrix_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/rotation_matrix_test.dir/DependInfo.cmake --color= Scanning dependencies of target rotation_matrix_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/rotation_matrix_test.dir/build.make src/utils/tests/CMakeFiles/rotation_matrix_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 69%] Building CXX object src/utils/tests/CMakeFiles/rotation_matrix_test.dir/rotation_matrix_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/rotation_matrix_test.dir/rotation_matrix_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/rotation_matrix_test.cpp [ 69%] Linking CXX executable rotation_matrix_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/rotation_matrix_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/rotation_matrix_test.dir/rotation_matrix_test.cpp.o -o rotation_matrix_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 69%] Built target rotation_matrix_test make -f src/utils/tests/CMakeFiles/histogram.dir/build.make src/utils/tests/CMakeFiles/histogram.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/histogram.dir/DependInfo.cmake --color= Scanning dependencies of target histogram make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/histogram.dir/build.make src/utils/tests/CMakeFiles/histogram.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 70%] Building CXX object src/utils/tests/CMakeFiles/histogram.dir/histogram.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/histogram.dir/histogram.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/histogram.cpp [ 70%] Linking CXX executable histogram cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/histogram.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/histogram.dir/histogram.cpp.o -o histogram /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 70%] Built target histogram make -f src/utils/tests/CMakeFiles/gather_buffer_test.dir/build.make src/utils/tests/CMakeFiles/gather_buffer_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/gather_buffer_test.dir/DependInfo.cmake --color= Scanning dependencies of target gather_buffer_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/gather_buffer_test.dir/build.make src/utils/tests/CMakeFiles/gather_buffer_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 70%] Building CXX object src/utils/tests/CMakeFiles/gather_buffer_test.dir/gather_buffer_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/gather_buffer_test.dir/gather_buffer_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/gather_buffer_test.cpp [ 70%] Linking CXX executable gather_buffer_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gather_buffer_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/gather_buffer_test.dir/gather_buffer_test.cpp.o -o gather_buffer_test /usr/lib/libboost_unit_test_framework.so /usr/lib/mpich/lib/libboost_mpi.so ../../config/EspressoConfig.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 70%] Built target gather_buffer_test make -f src/utils/tests/CMakeFiles/all_compare_test.dir/build.make src/utils/tests/CMakeFiles/all_compare_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/all_compare_test.dir/DependInfo.cmake --color= Scanning dependencies of target all_compare_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/all_compare_test.dir/build.make src/utils/tests/CMakeFiles/all_compare_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 70%] Building CXX object src/utils/tests/CMakeFiles/all_compare_test.dir/all_compare_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/all_compare_test.dir/all_compare_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/all_compare_test.cpp [ 71%] Linking CXX executable all_compare_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/all_compare_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/all_compare_test.dir/all_compare_test.cpp.o -o all_compare_test /usr/lib/libboost_unit_test_framework.so /usr/lib/mpich/lib/libboost_mpi.so ../../config/EspressoConfig.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target all_compare_test make -f src/utils/tests/CMakeFiles/scatter_buffer_test.dir/build.make src/utils/tests/CMakeFiles/scatter_buffer_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/scatter_buffer_test.dir/DependInfo.cmake --color= Scanning dependencies of target scatter_buffer_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/scatter_buffer_test.dir/build.make src/utils/tests/CMakeFiles/scatter_buffer_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Building CXX object src/utils/tests/CMakeFiles/scatter_buffer_test.dir/scatter_buffer_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/scatter_buffer_test.dir/scatter_buffer_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/scatter_buffer_test.cpp [ 71%] Linking CXX executable scatter_buffer_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/scatter_buffer_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/scatter_buffer_test.dir/scatter_buffer_test.cpp.o -o scatter_buffer_test /usr/lib/libboost_unit_test_framework.so /usr/lib/mpich/lib/libboost_mpi.so ../../config/EspressoConfig.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target scatter_buffer_test make -f src/utils/tests/CMakeFiles/Counter_test.dir/build.make src/utils/tests/CMakeFiles/Counter_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/Counter_test.dir/DependInfo.cmake --color= Scanning dependencies of target Counter_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/Counter_test.dir/build.make src/utils/tests/CMakeFiles/Counter_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Building CXX object src/utils/tests/CMakeFiles/Counter_test.dir/Counter_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -std=c++14 -o CMakeFiles/Counter_test.dir/Counter_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/Counter_test.cpp [ 71%] Linking CXX executable Counter_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/Counter_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/Counter_test.dir/Counter_test.cpp.o -o Counter_test /usr/lib/libboost_unit_test_framework.so ../../config/EspressoConfig.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target Counter_test make -f src/utils/tests/CMakeFiles/all_gatherv_test.dir/build.make src/utils/tests/CMakeFiles/all_gatherv_test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/utils/tests /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/utils/tests /builddir/build/BUILD/espresso/mpich/src/utils/tests/CMakeFiles/all_gatherv_test.dir/DependInfo.cmake --color= Scanning dependencies of target all_gatherv_test make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/utils/tests/CMakeFiles/all_gatherv_test.dir/build.make src/utils/tests/CMakeFiles/all_gatherv_test.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Building CXX object src/utils/tests/CMakeFiles/all_gatherv_test.dir/all_gatherv_test.cpp.o cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/c++ -D_GLIBCXX_ASSERTIONS -I/builddir/build/BUILD/espresso/src/core -I/builddir/build/BUILD/espresso/src/utils/include -I/builddir/build/BUILD/espresso/src/config -I/builddir/build/BUILD/espresso/mpich/src/config -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++14 -o CMakeFiles/all_gatherv_test.dir/all_gatherv_test.cpp.o -c /builddir/build/BUILD/espresso/src/utils/tests/all_gatherv_test.cpp [ 71%] Linking CXX executable all_gatherv_test cd /builddir/build/BUILD/espresso/mpich/src/utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/all_gatherv_test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wextra -Wno-sign-compare -Wno-unused-function -Wno-unused-variable -Wno-unused-parameter -Wno-missing-braces -Wno-implicit-fallthrough -Wno-clobbered -Wno-cast-function-type -pedantic -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags CMakeFiles/all_gatherv_test.dir/all_gatherv_test.cpp.o -o all_gatherv_test /usr/lib/libboost_unit_test_framework.so /usr/lib/mpich/lib/libboost_mpi.so ../../config/EspressoConfig.so /usr/lib/libboost_serialization.so /usr/lib/mpich/lib/libmpicxx.so /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target all_gatherv_test make -f src/CMakeFiles/check_unit_tests.dir/build.make src/CMakeFiles/check_unit_tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src /builddir/build/BUILD/espresso/mpich/src/CMakeFiles/check_unit_tests.dir/DependInfo.cmake --color= Scanning dependencies of target check_unit_tests make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/CMakeFiles/check_unit_tests.dir/build.make src/CMakeFiles/check_unit_tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src && /usr/bin/ctest --timeout 300 --output-on-failure Test project /builddir/build/BUILD/espresso/mpich/src Start 1: RuntimeError_test 1/67 Test #1: RuntimeError_test ................ Passed 0.01 sec Start 2: RuntimeErrorCollector_test 2/67 Test #2: RuntimeErrorCollector_test ....... Passed 0.04 sec Start 3: ScriptInterface_test 3/67 Test #3: ScriptInterface_test ............. Passed 0.02 sec Start 4: Wall_test 4/67 Test #4: Wall_test ........................ Passed 0.04 sec Start 5: Ellipsoid_test 5/67 Test #5: Ellipsoid_test ................... Passed 0.01 sec Start 6: MpiCallbacks_test 6/67 Test #6: MpiCallbacks_test ................ Passed 0.06 sec Start 7: ParallelScriptInterface_test 7/67 Test #7: ParallelScriptInterface_test ..... Passed 0.05 sec Start 8: AutoParameters_test 8/67 Test #8: AutoParameters_test .............. Passed 0.02 sec Start 9: AutoParameter_test 9/67 Test #9: AutoParameter_test ............... Passed 0.00 sec Start 10: Variant_test 10/67 Test #10: Variant_test ..................... Passed 0.00 sec Start 11: ParticleIterator_test 11/67 Test #11: ParticleIterator_test ............ Passed 0.01 sec Start 12: link_cell_test 12/67 Test #12: link_cell_test ................... Passed 0.01 sec Start 13: verlet_ia_test 13/67 Test #13: verlet_ia_test ................... Passed 1.15 sec Start 14: ParticleCache_test 14/67 Test #14: ParticleCache_test ............... Passed 0.10 sec Start 15: Particle_test 15/67 Test #15: Particle_test .................... Passed 0.01 sec Start 16: get_value 16/67 Test #16: get_value ........................ Passed 0.00 sec Start 17: field_coupling_couplings 17/67 Test #17: field_coupling_couplings ......... Passed 0.00 sec Start 18: field_coupling_fields 18/67 Test #18: field_coupling_fields ............ Passed 0.00 sec Start 19: field_coupling_force_field 19/67 Test #19: field_coupling_force_field ....... Passed 0.01 sec Start 20: periodic_fold_test 20/67 Test #20: periodic_fold_test ............... Passed 0.01 sec Start 21: None_test 21/67 Test #21: None_test ........................ Passed 0.01 sec Start 22: grid_test 22/67 Test #22: grid_test ........................ Passed 0.01 sec Start 23: BoxGeometry_test 23/67 Test #23: BoxGeometry_test ................. Passed 0.01 sec Start 24: LocalBox_test 24/67 Test #24: LocalBox_test .................... Passed 0.00 sec Start 25: abs_test 25/67 Test #25: abs_test ......................... Passed 0.00 sec Start 26: Vector_test 26/67 Test #26: Vector_test ...................... Passed 0.01 sec Start 27: Factory_test 27/67 Test #27: Factory_test ..................... Passed 0.00 sec Start 28: NumeratedContainer_test 28/67 Test #28: NumeratedContainer_test .......... Passed 0.00 sec Start 29: make_function_test 29/67 Test #29: make_function_test ............... Passed 0.01 sec Start 30: List_test 30/67 Test #30: List_test ........................ Passed 0.01 sec Start 31: SkipIterator_test 31/67 Test #31: SkipIterator_test ................ Passed 0.00 sec Start 32: keys_test 32/67 Test #32: keys_test ........................ Passed 0.00 sec Start 33: Cache_test 33/67 Test #33: Cache_test ....................... Passed 0.01 sec Start 34: histogram 34/67 Test #34: histogram ........................ Passed 0.00 sec Start 35: accumulator 35/67 Test #35: accumulator ...................... Passed 0.00 sec Start 36: strcat_alloc 36/67 Test #36: strcat_alloc ..................... Passed 0.00 sec Start 37: int_pow 37/67 Test #37: int_pow .......................... Passed 0.00 sec Start 38: sgn 38/67 Test #38: sgn .............................. Passed 0.01 sec Start 39: AS_erfc_part 39/67 Test #39: AS_erfc_part ..................... Passed 0.00 sec Start 40: sinc 40/67 Test #40: sinc ............................. Passed 0.00 sec Start 41: as_const 41/67 Test #41: as_const ......................... Passed 0.01 sec Start 42: permute_ifield_test 42/67 Test #42: permute_ifield_test .............. Passed 0.00 sec Start 43: vec_rotate 43/67 Test #43: vec_rotate ....................... Passed 0.00 sec Start 44: tensor_product 44/67 Test #44: tensor_product ................... Passed 0.00 sec Start 45: interpolation_gradient 45/67 Test #45: interpolation_gradient ........... Passed 0.01 sec Start 46: interpolation 46/67 Test #46: interpolation .................... Passed 0.01 sec Start 47: Span_test 47/67 Test #47: Span_test ........................ Passed 0.01 sec Start 48: matrix_vector_product 48/67 Test #48: matrix_vector_product ............ Passed 0.00 sec Start 49: ravel_index 49/67 Test #49: ravel_index ...................... Passed 0.01 sec Start 50: tuple_test 50/67 Test #50: tuple_test ....................... Passed 0.00 sec Start 51: Array_test 51/67 Test #51: Array_test ....................... Passed 0.01 sec Start 52: contains_test 52/67 Test #52: contains_test .................... Passed 0.00 sec Start 53: Counter_test 53/67 Test #53: Counter_test ..................... Passed 0.00 sec Start 54: RunningAverage_test 54/67 Test #54: RunningAverage_test .............. Passed 0.00 sec Start 55: for_each_pair_test 55/67 Test #55: for_each_pair_test ............... Passed 0.02 sec Start 56: raster_test 56/67 Test #56: raster_test ...................... Passed 0.01 sec Start 57: make_lin_space_test 57/67 Test #57: make_lin_space_test .............. Passed 0.00 sec Start 58: sampling_test 58/67 Test #58: sampling_test .................... Passed 0.01 sec Start 59: coordinate_transformation_test 59/67 Test #59: coordinate_transformation_test ... Passed 0.00 sec Start 60: rotation_matrix_test 60/67 Test #60: rotation_matrix_test ............. Passed 0.00 sec Start 61: gather_buffer_test 61/67 Test #61: gather_buffer_test ............... Passed 0.08 sec Start 62: scatter_buffer_test 62/67 Test #62: scatter_buffer_test .............. Passed 0.06 sec Start 63: all_compare_test 63/67 Test #63: all_compare_test ................. Passed 0.05 sec Start 64: gatherv_test 64/67 Test #64: gatherv_test ..................... Passed 0.02 sec Start 65: all_gatherv_test 65/67 Test #65: all_gatherv_test ................. Passed 0.02 sec Start 66: sendrecv_test 66/67 Test #66: sendrecv_test .................... Passed 0.05 sec Start 67: PdbParser_test 67/67 Test #67: PdbParser_test ................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 67 Total Test time (real) = 2.17 sec make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target check_unit_tests make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/object_in_fluid /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build.make src/python/object_in_fluid/CMakeFiles/object_in_fluid.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//__init__.py cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_classes.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//oif_classes.py cd /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/object_in_fluid/oif_utils.py /builddir/build/BUILD/espresso/mpich/src/python/object_in_fluid//oif_utils.py make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target object_in_fluid make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build.make src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/gen_pxiconfig.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 71%] Built target gen_pxiconfig make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_polymer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build.make src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_polymer.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 72%] Built target espressomd_polymer make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization_opengl.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 73%] Built target espressomd_visualization_opengl make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build.make src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_thermostat.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_thermostat make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_system.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_system.dir/build.make src/python/espressomd/CMakeFiles/espressomd_system.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_system.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_system make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization_mayavi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 74%] Built target espressomd_visualization_mayavi make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build.make src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_scafacos.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 75%] Built target espressomd_scafacos make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_globals.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_globals.dir/build.make src/python/espressomd/CMakeFiles/espressomd_globals.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_globals.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 76%] Built target espressomd_globals make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_diamond.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build.make src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_diamond.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 78%] Built target espressomd_diamond make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd__init.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd__init.dir/build.make src/python/espressomd/CMakeFiles/espressomd__init.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd__init.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 79%] Built target espressomd__init make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_magnetostatics.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 80%] Built target espressomd_magnetostatics make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build.make src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_collision_detection.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 81%] Built target espressomd_collision_detection make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_profiler.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build.make src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_profiler.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Built target espressomd_profiler make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrokinetics.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Built target espressomd_electrokinetics make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build.make src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_particle_data.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 82%] Built target espressomd_particle_data make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build.make src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_reaction_ensemble.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 83%] Built target espressomd_reaction_ensemble make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_cuda_init.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 84%] Built target espressomd_cuda_init make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_analyze.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build.make src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_analyze.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 85%] Built target espressomd_analyze make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build.make src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_cellsystem.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 86%] Built target espressomd_cellsystem make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_actors.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_actors.dir/build.make src/python/espressomd/CMakeFiles/espressomd_actors.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_actors.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 86%] Built target espressomd_actors make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_code_info.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build.make src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_code_info.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 87%] Built target espressomd_code_info make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrostatics.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 89%] Built target espressomd_electrostatics make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build.make src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_script_interface.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 90%] Built target espressomd_script_interface make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_magnetostatic_extensions.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 91%] Built target espressomd_magnetostatic_extensions make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_galilei.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build.make src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_galilei.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 92%] Built target espressomd_galilei make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_version.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_version.dir/build.make src/python/espressomd/CMakeFiles/espressomd_version.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_version.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 93%] Built target espressomd_version make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_integrate.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build.make src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_integrate.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 93%] Built target espressomd_integrate make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_visualization.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build.make src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_visualization.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 94%] Built target espressomd_visualization make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build.make src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_minimize_energy.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 95%] Built target espressomd_minimize_energy make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_electrostatic_extensions.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 96%] Built target espressomd_electrostatic_extensions make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_interactions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build.make src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_interactions.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 97%] Built target espressomd_interactions make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_lb.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_lb.dir/build.make src/python/espressomd/CMakeFiles/espressomd_lb.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_lb.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [ 98%] Built target espressomd_lb make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd_utils.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd_utils.dir/build.make src/python/espressomd/CMakeFiles/espressomd_utils.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/espressomd/CMakeFiles/espressomd_utils.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target espressomd_utils make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python/espressomd /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python/espressomd /builddir/build/BUILD/espresso/mpich/src/python/espressomd/CMakeFiles/espressomd.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/espressomd/CMakeFiles/espressomd.dir/build.make src/python/espressomd/CMakeFiles/espressomd.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__cinit__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//__cinit__.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//__init__.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/accumulators.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//accumulators.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/checkpointing.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//checkpointing.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/cluster_analysis.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//cluster_analysis.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/comfixed.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//comfixed.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/constraints.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//constraints.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/drude_helpers.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//drude_helpers.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/ekboundaries.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//ekboundaries.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_code_info.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//gen_code_info.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/gen_pxiconfig.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//gen_pxiconfig.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/highlander.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//highlander.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/lbboundaries.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//lbboundaries.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/observables.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//observables.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/pair_criteria.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//pair_criteria.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/shapes.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//shapes.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/virtual_sites.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd//virtual_sites.py cd /builddir/build/BUILD/espresso/mpich/src/python/espressomd && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/src/python/espressomd/io/__init__.py /builddir/build/BUILD/espresso/mpich/src/python/espressomd/io/__init__.py make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target espressomd make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/src/python /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/src/python /builddir/build/BUILD/espresso/mpich/src/python/CMakeFiles/pypresso.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f src/python/CMakeFiles/pypresso.dir/build.make src/python/CMakeFiles/pypresso.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' make[3]: Nothing to be done for 'src/python/CMakeFiles/pypresso.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target pypresso make -f testsuite/python/CMakeFiles/python_test_data.dir/build.make testsuite/python/CMakeFiles/python_test_data.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/testsuite/python /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/testsuite/python /builddir/build/BUILD/espresso/mpich/testsuite/python/CMakeFiles/python_test_data.dir/DependInfo.cmake --color= Scanning dependencies of target python_test_data make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f testsuite/python/CMakeFiles/python_test_data.dir/build.make testsuite/python/CMakeFiles/python_test_data.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/testsuite/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/espresso/testsuite/python/data /builddir/build/BUILD/espresso/mpich/testsuite/python/data cd /builddir/build/BUILD/espresso/mpich/testsuite/python && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/testsuite/python/tests_common.py /builddir/build/BUILD/espresso/mpich/testsuite/python cd /builddir/build/BUILD/espresso/mpich/testsuite/python && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/testsuite/python/unittest_decorators.py /builddir/build/BUILD/espresso/mpich/testsuite/python cd /builddir/build/BUILD/espresso/mpich/testsuite/python && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/testsuite/python/virtual_sites_tracers_common.py /builddir/build/BUILD/espresso/mpich/testsuite/python cd /builddir/build/BUILD/espresso/mpich/testsuite/python && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/testsuite/python/ek_common.py /builddir/build/BUILD/espresso/mpich/testsuite/python cd /builddir/build/BUILD/espresso/mpich/testsuite/python && /usr/bin/cmake -E copy /builddir/build/BUILD/espresso/testsuite/python/ek_eof_one_species_base.py /builddir/build/BUILD/espresso/mpich/testsuite/python make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' [100%] Built target python_test_data make -f testsuite/python/CMakeFiles/check_python.dir/build.make testsuite/python/CMakeFiles/check_python.dir/depend make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/espresso /builddir/build/BUILD/espresso/testsuite/python /builddir/build/BUILD/espresso/mpich /builddir/build/BUILD/espresso/mpich/testsuite/python /builddir/build/BUILD/espresso/mpich/testsuite/python/CMakeFiles/check_python.dir/DependInfo.cmake --color= Scanning dependencies of target check_python make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make -f testsuite/python/CMakeFiles/check_python.dir/build.make testsuite/python/CMakeFiles/check_python.dir/build make[3]: Entering directory '/builddir/build/BUILD/espresso/mpich' cd /builddir/build/BUILD/espresso/mpich/testsuite/python && /usr/bin/ctest --timeout 300 -j4 --output-on-failure Test project /builddir/build/BUILD/espresso/mpich/testsuite/python Start 1: save_checkpoint_lb.cpu-p3m.cpu-lj-lbtherm_1 1/135 Test #1: save_checkpoint_lb.cpu-p3m.cpu-lj-lbtherm_1 ... Passed 1.54 sec Start 3: save_checkpoint_lb.cpu-p3m.cpu-lj-lbtherm_0 2/135 Test #3: save_checkpoint_lb.cpu-p3m.cpu-lj-lbtherm_0 ... Passed 1.86 sec Start 5: save_checkpoint_lb.gpu-p3m.cpu-lj-lbtherm_1 3/135 Test #5: save_checkpoint_lb.gpu-p3m.cpu-lj-lbtherm_1 ... Passed 0.78 sec Start 7: save_checkpoint_lb.gpu-p3m.cpu-lj-lbtherm_0 4/135 Test #7: save_checkpoint_lb.gpu-p3m.cpu-lj-lbtherm_0 ... Passed 0.77 sec Start 9: save_checkpoint_ek.gpu_1 5/135 Test #9: save_checkpoint_ek.gpu_1 ...................... Passed 0.74 sec Start 11: save_checkpoint_ek.gpu_0 6/135 Test #11: save_checkpoint_ek.gpu_0 ...................... Passed 0.75 sec Start 2: test_checkpoint_lb.cpu-p3m.cpu-lj-lbtherm_1 7/135 Test #2: test_checkpoint_lb.cpu-p3m.cpu-lj-lbtherm_1 ... Passed 5.75 sec Start 4: test_checkpoint_lb.cpu-p3m.cpu-lj-lbtherm_0 8/135 Test #4: test_checkpoint_lb.cpu-p3m.cpu-lj-lbtherm_0 ... Passed 6.23 sec Start 6: test_checkpoint_lb.gpu-p3m.cpu-lj-lbtherm_1 9/135 Test #6: test_checkpoint_lb.gpu-p3m.cpu-lj-lbtherm_1 ... Passed 0.69 sec Start 8: test_checkpoint_lb.gpu-p3m.cpu-lj-lbtherm_0 10/135 Test #8: test_checkpoint_lb.gpu-p3m.cpu-lj-lbtherm_0 ... Passed 0.64 sec Start 10: test_checkpoint_ek.gpu_1 11/135 Test #10: test_checkpoint_ek.gpu_1 ...................... Passed 0.63 sec Start 12: test_checkpoint_ek.gpu_0 12/135 Test #12: test_checkpoint_ek.gpu_0 ...................... Passed 0.64 sec Start 13: cellsystem 13/135 Test #13: cellsystem .................................... Passed 0.51 sec Start 14: tune_skin Start 16: constraint_shape_based Start 28: magnetostaticInteractions 14/135 Test #14: tune_skin ..................................... Passed 0.44 sec Start 47: rotational-diffusion-aniso 15/135 Test #28: magnetostaticInteractions ..................... Passed 0.46 sec Start 50: widom_insertion 16/135 Test #16: constraint_shape_based ........................ Passed 1.17 sec Start 23: electrostaticInteractions 17/135 Test #23: electrostaticInteractions ..................... Passed 1.14 sec Start 29: mass-and-rinertia_per_particle 18/135 Test #50: widom_insertion ............................... Passed 1.95 sec Start 60: langevin_thermostat 19/135 Test #60: langevin_thermostat ........................... Passed 4.06 sec Start 68: dipolar_mdlc_p3m_scafacos_p2nfft 20/135 Test #47: rotational-diffusion-aniso .................... Passed 9.90 sec Start 75: rdf 21/135 Test #75: rdf ........................................... Passed 0.47 sec Start 83: auto_exclusions 22/135 Test #83: auto_exclusions ............................... Passed 0.41 sec Start 87: analyze_chains 23/135 Test #87: analyze_chains ................................ Passed 0.44 sec Start 88: analyze_distance 24/135 Test #88: analyze_distance .............................. Passed 0.49 sec Start 95: wang_landau_reaction_ensemble 25/135 Test #68: dipolar_mdlc_p3m_scafacos_p2nfft .............. Passed 7.74 sec Start 97: analyze_distribution 26/135 Test #97: analyze_distribution .......................... Passed 0.44 sec Start 105: actor 27/135 Test #105: actor ......................................... Passed 0.39 sec Start 110: lb_boundary_velocity 28/135 Test #29: mass-and-rinertia_per_particle ................ Passed 13.03 sec Start 33: interactions_bonded 29/135 Test #33: interactions_bonded ........................... Passed 0.50 sec Start 42: tabulated 30/135 Test #110: lb_boundary_velocity .......................... Passed 0.83 sec Start 115: analyze_gyration_tensor 31/135 Test #115: analyze_gyration_tensor ....................... Passed 0.44 sec Start 117: simple_pore 32/135 Test #42: tabulated ..................................... Passed 0.70 sec Start 59: exclusions 33/135 Test #117: simple_pore ................................... Passed 0.69 sec Start 118: field_test 34/135 Test #59: exclusions .................................... Passed 0.74 sec Start 62: virtual_sites_relative 35/135 Test #95: wang_landau_reaction_ensemble ................. Passed 15.31 sec Start 124: sigint 36/135 Test #124: sigint ........................................ Passed 1.17 sec Start 125: lb_density 37/135 Test #125: lb_density .................................... Passed 0.97 sec Start 129: features 38/135 Test #129: features ...................................... Passed 0.41 sec Start 131: time_series 39/135 Test #118: field_test .................................... Passed 13.22 sec 40/135 Test #131: time_series ................................... Passed 0.44 sec Start 63: virtual_sites_tracers 41/135 Test #62: virtual_sites_relative ........................ Passed 13.66 sec Start 70: force_cap 42/135 Test #70: force_cap ..................................... Passed 0.46 sec Start 73: analyze_energy 43/135 Test #73: analyze_energy ................................ Passed 0.53 sec Start 84: subt_lj 44/135 Test #84: subt_lj ....................................... Passed 0.45 sec Start 89: comfixed 45/135 Test #89: comfixed ...................................... Passed 0.47 sec Start 90: rescale 46/135 Test #90: rescale ....................................... Passed 0.48 sec Start 92: elc_vs_mmm2d_neutral 47/135 Test #63: virtual_sites_tracers ......................... Passed 3.65 sec Start 93: elc_vs_mmm2d_nonneutral 48/135 Test #93: elc_vs_mmm2d_nonneutral ....................... Passed 1.07 sec Start 106: drude 49/135 Test #106: drude ......................................... Passed 0.45 sec Start 116: oif_volume_conservation 50/135 Test #116: oif_volume_conservation ....................... Passed 0.50 sec Start 123: p3m_electrostatic_pressure 51/135 Test #92: elc_vs_mmm2d_neutral .......................... Passed 3.74 sec Start 135: h5md 52/135 Test #135: h5md .......................................... Passed 0.88 sec 53/135 Test #123: p3m_electrostatic_pressure .................... Passed 9.66 sec Start 15: constraint_homogeneous_magnetic_field 54/135 Test #15: constraint_homogeneous_magnetic_field ......... Passed 0.48 sec Start 17: coulomb_cloud_wall 55/135 Test #17: coulomb_cloud_wall ............................ Passed 1.41 sec Start 18: coulomb_tuning 56/135 Test #18: coulomb_tuning ................................ Passed 4.34 sec Start 19: correlation 57/135 Test #19: correlation ................................... Passed 1.83 sec Start 20: dawaanr-and-dds-gpu 58/135 Test #20: dawaanr-and-dds-gpu ........................... Passed 0.38 sec Start 21: dawaanr-and-bh-gpu 59/135 Test #21: dawaanr-and-bh-gpu ............................ Passed 0.38 sec Start 22: dds-and-bh-gpu 60/135 Test #22: dds-and-bh-gpu ................................ Passed 0.55 sec Start 24: engine_langevin 61/135 Test #24: engine_langevin ............................... Passed 0.54 sec Start 25: engine_lb 62/135 Test #25: engine_lb ..................................... Passed 0.45 sec Start 26: experimental_decorator 63/135 Test #26: experimental_decorator ........................ Passed 0.50 sec Start 27: icc 64/135 Test #27: icc ........................................... Passed 0.98 sec Start 30: integrate 65/135 Test #30: integrate ..................................... Passed 0.56 sec Start 31: interactions_bond_angle 66/135 Test #31: interactions_bond_angle ....................... Passed 2.03 sec Start 32: interactions_bonded_interface 67/135 Test #32: interactions_bonded_interface ................. Passed 0.53 sec Start 34: interactions_dihedral 68/135 Test #34: interactions_dihedral ......................... Passed 0.85 sec Start 35: interactions_non-bonded_interface 69/135 Test #35: interactions_non-bonded_interface ............. Passed 0.51 sec Start 36: interactions_non-bonded 70/135 Test #36: interactions_non-bonded ....................... Passed 1.42 sec Start 37: observables 71/135 Test #37: observables ................................... Passed 0.94 sec Start 38: p3m_gpu 72/135 Test #38: p3m_gpu ....................................... Passed 0.55 sec Start 39: particle 73/135 Test #39: particle ...................................... Passed 0.76 sec Start 40: stress 74/135 Test #40: stress ........................................ Passed 0.51 sec Start 41: scafacos_dipoles_1d_2d 75/135 Test #41: scafacos_dipoles_1d_2d ........................ Passed 0.50 sec Start 43: particle_slice 76/135 Test #43: particle_slice ................................ Passed 0.57 sec Start 44: rigid_bond 77/135 Test #44: rigid_bond .................................... Passed 1.22 sec Start 45: rotation_per_particle 78/135 Test #45: rotation_per_particle ......................... Passed 0.70 sec Start 46: rotational_inertia 79/135 Test #46: rotational_inertia ............................ Passed 1.95 sec Start 48: script_interface_object_params 80/135 Test #48: script_interface_object_params ................ Passed 0.49 sec Start 49: reaction_ensemble 81/135 Test #49: reaction_ensemble ............................. Passed 4.84 sec Start 51: constant_pH 82/135 Test #51: constant_pH ................................... Passed 5.47 sec Start 52: writevtf 83/135 Test #52: writevtf ...................................... Passed 0.54 sec Start 53: lb_stokes_sphere 84/135 Test #53: lb_stokes_sphere .............................. Passed 10.92 sec Start 54: ek_fluctuations 85/135 Test #54: ek_fluctuations ............................... Passed 0.35 sec Start 55: ek_charged_plate 86/135 Test #55: ek_charged_plate .............................. Passed 0.39 sec Start 56: ek_eof_one_species_x 87/135 Test #56: ek_eof_one_species_x .......................... Passed 0.37 sec Start 57: ek_eof_one_species_y 88/135 Test #57: ek_eof_one_species_y .......................... Passed 0.36 sec Start 58: ek_eof_one_species_z 89/135 Test #58: ek_eof_one_species_z .......................... Passed 0.37 sec Start 61: nsquare 90/135 Test #61: nsquare ....................................... Passed 0.56 sec Start 64: virtual_sites_tracers_gpu 91/135 Test #64: virtual_sites_tracers_gpu ..................... Passed 0.43 sec Start 65: domain_decomposition 92/135 Test #65: domain_decomposition .......................... Passed 0.68 sec Start 66: layered 93/135 Test #66: layered ....................................... Passed 0.71 sec Start 67: minimize_energy 94/135 Test #67: minimize_energy ............................... Passed 0.85 sec Start 69: lb 95/135 Test #69: lb ............................................ Passed 4.25 sec Start 71: dpd 96/135 Test #71: dpd ........................................... Passed 25.66 sec Start 72: hat 97/135 Test #72: hat ........................................... Passed 0.55 sec Start 74: analyze_mass_related 98/135 Test #74: analyze_mass_related .......................... Passed 0.51 sec Start 76: coulomb_mixed_periodicity 99/135 Test #76: coulomb_mixed_periodicity ..................... Passed 2.83 sec Start 77: coulomb_cloud_wall_duplicated 100/135 Test #77: coulomb_cloud_wall_duplicated ................. Passed 2.85 sec Start 78: collision_detection 101/135 Test #78: collision_detection ........................... Passed 4.60 sec Start 79: lb_get_u_at_pos 102/135 Test #79: lb_get_u_at_pos ............................... Passed 0.58 sec Start 80: lj 103/135 Test #80: lj ............................................ Passed 0.73 sec Start 81: pairs 104/135 Test #81: pairs ......................................... Passed 0.58 sec Start 82: polymer 105/135 Test #82: polymer ....................................... Passed 0.91 sec Start 85: observable_cylindrical 106/135 Test #85: observable_cylindrical ........................ Passed 0.75 sec Start 86: observable_cylindricalLB 107/135 Test #86: observable_cylindricalLB ...................... Passed 0.37 sec Start 91: npt 108/135 Test #91: npt ........................................... Passed 29.87 sec Start 94: accumulator 109/135 Test #94: accumulator ................................... Passed 0.53 sec Start 96: array_properties 110/135 Test #96: array_properties .............................. Passed 0.51 sec Start 98: observable_profile 111/135 Test #98: observable_profile ............................ Passed 0.47 sec Start 99: observable_profileLB 112/135 Test #99: observable_profileLB .......................... Passed 0.91 sec Start 100: rotate_system 113/135 Test #100: rotate_system ................................. Passed 0.49 sec Start 101: random_pairs 114/135 Test #101: random_pairs .................................. Passed 5.45 sec Start 102: lb_electrohydrodynamics 115/135 Test #102: lb_electrohydrodynamics ....................... Passed 0.47 sec Start 103: cluster_analysis 116/135 Test #103: cluster_analysis .............................. Passed 1.34 sec Start 104: pair_criteria 117/135 Test #104: pair_criteria ................................. Passed 0.50 sec Start 107: thermalized_bond 118/135 Test #107: thermalized_bond .............................. Passed 1.88 sec Start 108: thole 119/135 Test #108: thole ......................................... Passed 0.47 sec Start 109: lb_switch 120/135 Test #109: lb_switch ..................................... Passed 0.39 sec Start 111: lb_thermo_virtual 121/135 Test #111: lb_thermo_virtual ............................. Passed 0.46 sec Start 112: lb_poiseuille 122/135 Test #112: lb_poiseuille ................................. Passed 0.72 sec Start 113: lb_poiseuille_cylinder 123/135 Test #113: lb_poiseuille_cylinder ........................ Passed 0.65 sec Start 114: lb_interpolation 124/135 Test #114: lb_interpolation .............................. Passed 1.25 sec Start 119: lb_boundary 125/135 Test #119: lb_boundary ................................... Passed 0.65 sec Start 120: lb_streaming 126/135 Test #120: lb_streaming .................................. Passed 1.09 sec Start 121: lb_shear 127/135 Test #121: lb_shear ...................................... Passed 1.54 sec Start 122: lb_thermostat 128/135 Test #122: lb_thermostat ................................. Passed 1.53 sec Start 126: observable_chain 129/135 Test #126: observable_chain .............................. Passed 0.59 sec Start 127: mpiio 130/135 Test #127: mpiio .........................................***Failed 1.83 sec /usr/include/c++/9/bits/stl_vector.h:1042: std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](std::vector<_Tp, _Alloc>::size_type) [with _Tp = int; _Alloc = std::allocator; std::vector<_Tp, _Alloc>::reference = int&; std::vector<_Tp, _Alloc>::size_type = unsigned int]: Assertion '__builtin_expect(__n < this->size(), true)' failed. =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 22870 RUNNING AT buildvm-12.phx2.fedoraproject.org = EXIT CODE: 134 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Aborted (signal 6) This typically refers to a problem with your application. Please see the FAQ page for debugging suggestions Start 128: gpu_availability 131/135 Test #128: gpu_availability .............................. Passed 0.35 sec Start 130: galilei 132/135 Test #130: galilei ....................................... Passed 0.58 sec Start 132: linear_momentum 133/135 Test #132: linear_momentum ............................... Passed 0.48 sec Start 133: linear_momentum_lb 134/135 Test #133: linear_momentum_lb ............................ Passed 0.44 sec Start 134: mmm1d 135/135 Test #134: mmm1d ......................................... Passed 0.77 sec 99% tests passed, 1 tests failed out of 135 Label Time Summary: gpu = 126.70 sec*proc (40 tests) long = 67.60 sec*proc (5 tests) parallel = 746.89 sec*proc (103 tests) parallel_odd = 596.12 sec*proc (73 tests) Total Test time (real) = 221.61 sec The following tests FAILED: 127 - mpiio (Failed) Errors while running CTest make[3]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make[3]: *** [testsuite/python/CMakeFiles/check_python.dir/build.make:60: testsuite/python/CMakeFiles/check_python] Error 8 make[2]: *** [CMakeFiles/Makefile2:247: testsuite/python/CMakeFiles/check_python.dir/all] Error 2 make[2]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make[1]: Leaving directory '/builddir/build/BUILD/espresso/mpich' make[1]: *** [CMakeFiles/Makefile2:125: CMakeFiles/check.dir/rule] Error 2 make: *** [Makefile:191: check] Error 2 make: Leaving directory '/builddir/build/BUILD/espresso/mpich' RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.5JL1Lp (%check) Bad exit status from /var/tmp/rpm-tmp.5JL1Lp (%check) Child return code was: 1 EXCEPTION: [Error()] Traceback (most recent call last): File "/usr/lib/python3.7/site-packages/mockbuild/trace_decorator.py", line 95, in trace result = func(*args, **kw) File "/usr/lib/python3.7/site-packages/mockbuild/util.py", line 743, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/espresso.spec