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biscuit module KeyError #1101

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efratushava opened this issue Feb 5, 2020 · 0 comments
Closed

biscuit module KeyError #1101

efratushava opened this issue Feb 5, 2020 · 0 comments
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bug: core Bug in the main MultiQC code

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@efratushava
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Description of bug:
My command failes, and the error massage instructed me to report an issue...

MultiQC Error log:

[ERROR  ]         multiqc : Oops! The 'biscuit' MultiQC module broke...
  Please copy the following traceback and report it at https://github.com/ewels/MultiQC/issues
  If possible, please include a log file that triggers the error - the last file found was:
    ./biscuit_QC/File_biscuitQC/File_covdist_q40_botgc_table.txt
[File_covdist_q40_botgc_table.txt](https://github.com/ewels/MultiQC/files/4159241/File_covdist_q40_botgc_table.txt)

============================================================
Module biscuit raised an exception: Traceback (most recent call last):
  File "lib/python2.7/site-packages/multiqc/multiqc.py", line 546, in run
    output = mod()
  File "lib/python2.7/site-packages/multiqc/modules/biscuit/biscuit.py", line 113, in __init__
    getattr(self, 'chart_{}'.format(k))()
  File "lib/python2.7/site-packages/multiqc/modules/biscuit/biscuit.py", line 740, in chart_retention_cpg_readpos
    dict([(k,v['1']) for k, v in self.mdata['retention_cph_readpos'].items()]),
KeyError: '1'
============================================================

File that triggers the error:
File_covdist_q40_botgc_table.txt

MultiQC run details (please complete the following):

  • Command used to run MultiQC: multiqc -f --config multiqc_config.yaml . -m fastqc -m biscuit

  • MultiQC Version: multiqc, version 1.8

  • Operating System: Debian- Kernel Linux 4.4.146-aufs-1

  • Python Version: Python 2.7.15

  • Method of MultiQC installation: tried with pip or conda,( conda was through docker/singularity)

Additional context
Add any other context about the problem here.

@ewels ewels added the bug: core Bug in the main MultiQC code label Feb 19, 2020
@ewels ewels changed the title My multiqc fails... biscuit module KeyError Feb 19, 2020
@jamorrison jamorrison mentioned this issue Apr 23, 2020
3 tasks
@ewels ewels closed this as completed May 23, 2020
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Labels
bug: core Bug in the main MultiQC code
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