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Can't find data in ExtractIlluminaBarcodes metrics log #1611

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lizcodd opened this issue Jan 8, 2022 · 2 comments
Closed

Can't find data in ExtractIlluminaBarcodes metrics log #1611

lizcodd opened this issue Jan 8, 2022 · 2 comments
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bug: module Bug in a MultiQC module

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@lizcodd
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lizcodd commented Jan 8, 2022

Description of bug

MultiQC finds the correct log file but can't find the data due to potential input file format change:

MultiQC looks for both ## METRICS CLASS and ExtractIlluminaBarcodes in the same line but this was not output by Picard ExtractIlluminaBarcodes Version:2.26.2

File that triggers the error

1_barcode_metrics.log

MultiQC Error log

multiqc .

 /// MultiQC 🔍 | v1.11

|           multiqc | Search path : /scratch/lab/cfDNA/run_results/logs
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 73/73  
|          bargraph | Tried to make bar plot, but had no data
|          bargraph | Tried to make bar plot, but had no data
|            picard | Found 4 ExtractIlluminaBarcodes reports
|           multiqc | Compressing plot data
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | MultiQC complete
@lizcodd lizcodd changed the title Can't Find Data in ExtractIlluminaBarcodes metrics log Can't find data in ExtractIlluminaBarcodes metrics log Jan 8, 2022
@ewels ewels added the bug: module Bug in a MultiQC module label Jan 15, 2022
@ewels
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ewels commented Jan 15, 2022

Thanks for letting me know! The Picard outputs can be pretty variable, it's always a bit of a moving target!

ewels added a commit to MultiQC/test-data that referenced this issue Jan 27, 2022
@ewels ewels closed this as completed in 7a0229c Jan 27, 2022
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ewels commented Jan 27, 2022

Should be fixed in 7a0229c - thanks for reporting!

vladsavelyev pushed a commit to vladsavelyev/MultiQC_TestData that referenced this issue Apr 16, 2022
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Labels
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