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detiding_cases.tex
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detiding_cases.tex
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\documentclass{article}\usepackage[]{graphicx}\usepackage[]{color}
%% maxwidth is the original width if it is less than linewidth
%% otherwise use linewidth (to make sure the graphics do not exceed the margin)
\makeatletter
\def\maxwidth{ %
\ifdim\Gin@nat@width>\linewidth
\linewidth
\else
\Gin@nat@width
\fi
}
\makeatother
\definecolor{fgcolor}{rgb}{0.345, 0.345, 0.345}
\newcommand{\hlnum}[1]{\textcolor[rgb]{0.686,0.059,0.569}{#1}}%
\newcommand{\hlstr}[1]{\textcolor[rgb]{0.192,0.494,0.8}{#1}}%
\newcommand{\hlcom}[1]{\textcolor[rgb]{0.678,0.584,0.686}{\textit{#1}}}%
\newcommand{\hlopt}[1]{\textcolor[rgb]{0,0,0}{#1}}%
\newcommand{\hlstd}[1]{\textcolor[rgb]{0.345,0.345,0.345}{#1}}%
\newcommand{\hlkwa}[1]{\textcolor[rgb]{0.161,0.373,0.58}{\textbf{#1}}}%
\newcommand{\hlkwb}[1]{\textcolor[rgb]{0.69,0.353,0.396}{#1}}%
\newcommand{\hlkwc}[1]{\textcolor[rgb]{0.333,0.667,0.333}{#1}}%
\newcommand{\hlkwd}[1]{\textcolor[rgb]{0.737,0.353,0.396}{\textbf{#1}}}%
\usepackage{framed}
\makeatletter
\newenvironment{kframe}{%
\def\at@end@of@kframe{}%
\ifinner\ifhmode%
\def\at@end@of@kframe{\end{minipage}}%
\begin{minipage}{\columnwidth}%
\fi\fi%
\def\FrameCommand##1{\hskip\@totalleftmargin \hskip-\fboxsep
\colorbox{shadecolor}{##1}\hskip-\fboxsep
% There is no \\@totalrightmargin, so:
\hskip-\linewidth \hskip-\@totalleftmargin \hskip\columnwidth}%
\MakeFramed {\advance\hsize-\width
\@totalleftmargin\z@ \linewidth\hsize
\@setminipage}}%
{\par\unskip\endMakeFramed%
\at@end@of@kframe}
\makeatother
\definecolor{shadecolor}{rgb}{.97, .97, .97}
\definecolor{messagecolor}{rgb}{0, 0, 0}
\definecolor{warningcolor}{rgb}{1, 0, 1}
\definecolor{errorcolor}{rgb}{1, 0, 0}
\newenvironment{knitrout}{}{} % an empty environment to be redefined in TeX
\usepackage{alltt}
\usepackage[top=1in,bottom=1in,left=1in,right=1in]{geometry}
\usepackage{cleveref}
% knitr options
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\begin{document}
\setlength{\parskip}{5mm}
\setlength{\parindent}{0in}
\title{Case examples for removal of advection effects on DO measurements}
\author{Marcus W. Beck}
\maketitle
\section{Overview}
Four stations from the SWMP database were chosen as case examples for evaluating effectiveness of weighted regression to detide the DO signal. Stations were chosen to represent unique combinations of relatively high or low tidal range and high or low production range.
\clearpage
%%%%%%
% figures
% maps of each case
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{figure}[]
{\centering \includegraphics[width=\maxwidth]{figure/case_map}
}
\caption[Satellite view of each case]{Satellite view of each case. KACHD: low DO/high tide, PDBBY: high DO/high tide, MARMB: low DO/low tide, WKBFR: high DO/low tide.\label{fig:case_map}}
\end{figure}
\end{knitrout}
\clearpage
% time series and metab ests for each case
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{figure}[]
{\centering \includegraphics[width=\maxwidth]{figure/case_wq}
}
\caption[KACHD]{KACHD: low DO/high tide, PDBBY: high DO/high tide, MARMB: low DO/low tide, WKBFR: high DO/low tide\label{fig:case_wq}}
\end{figure}
\end{knitrout}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
{\ttfamily\noindent\bfseries\color{errorcolor}{\#\# Error: 'from' must be of length 1}}\end{kframe}
\end{knitrout}
% tidal regression before/after
\end{document}