From d293da8499404dbb37414a7963fde313e8146d6d Mon Sep 17 00:00:00 2001
From: Felix Lenner <52530259+fellen31@users.noreply.github.com>
Date: Wed, 17 Apr 2024 17:28:20 +0200
Subject: [PATCH] fix version reporting (#84)

---
 modules/local/fqcrs.nf                | 6 ++++--
 modules/local/pacbio/hificnv/main.nf  | 2 +-
 modules/local/sniffles/multisample.nf | 2 +-
 3 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/modules/local/fqcrs.nf b/modules/local/fqcrs.nf
index e1bb5577..3b0a6a65 100644
--- a/modules/local/fqcrs.nf
+++ b/modules/local/fqcrs.nf
@@ -2,7 +2,9 @@ process FQCRS {
     tag "$meta.id"
     label 'process_single'
 
-    container "docker.io/fellen31/fqcrs:latest"
+    container "docker.io/fellen31/fqcrs:0.1.0"
+    // Add verion manually
+    def fqcrs_version = '0.1.0'
 
     // Exit if running this module with -profile conda / -profile mamba
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
@@ -28,7 +30,7 @@ process FQCRS {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        fqcrs: \$(echo "no-version" )
+        fqcrs: \$(echo "$fqcrs_version" )
     END_VERSIONS
     """
 }
diff --git a/modules/local/pacbio/hificnv/main.nf b/modules/local/pacbio/hificnv/main.nf
index 3c25fe60..b4383aa5 100644
--- a/modules/local/pacbio/hificnv/main.nf
+++ b/modules/local/pacbio/hificnv/main.nf
@@ -43,7 +43,7 @@ process HIFICNV {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        hificnv: \$(echo \$(cramino -V) | sed 's/cramino //' )
+        hificnv: \$(echo \$(hificnv -V) | sed 's/hificnv //' )
     END_VERSIONS
     """
 }
diff --git a/modules/local/sniffles/multisample.nf b/modules/local/sniffles/multisample.nf
index 190d8776..c8007491 100644
--- a/modules/local/sniffles/multisample.nf
+++ b/modules/local/sniffles/multisample.nf
@@ -33,7 +33,7 @@ process SNIFFLES_MULTISAMPLE {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        sniffles_multisample: \$(sniffles --help 2>&1 | grep Version |sed 's/^.*Version: //')
+        sniffles_multisample: \$(sniffles --help 2>&1 | grep Version |sed 's/^.*Version //')
     END_VERSIONS
     """
 }