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One thing it took me a minute to figure out is what to do when I have >1 json file. We need to concatenate them for validation (the workflow submission allows you to upload >1 json, but the validation doesn't)
Here's a note I wrote for myself. Could maybe add something like this somewhere in WDL101. Not sure where the best spot for it would be.
To merge two or more json files from the command line, we can use jq
Maybe there's a better way - I would hope there's a more generalized solution where you don't need to mess with the bit in quotes when you change the number of files you're merging.
The text was updated successfully, but these errors were encountered:
One thing it took me a minute to figure out is what to do when I have >1 json file. We need to concatenate them for validation (the workflow submission allows you to upload >1 json, but the validation doesn't)
Here's a note I wrote for myself. Could maybe add something like this somewhere in WDL101. Not sure where the best spot for it would be.
To merge two or more json files from the command line, we can use
jq
Maybe there's a better way - I would hope there's a more generalized solution where you don't need to mess with the bit in quotes when you change the number of files you're merging.
The text was updated successfully, but these errors were encountered: