Code and Software

R

R packages for image analysis

• imager: an R package for image processing
• The magick package: Advanced Image-Processing in R
• OpenImageR
  • Image segmentation based on Superpixels and Clustering
• SuperpixelImageSegmentationSuperpixelImageSegmentation

R packages for deep learning/computer vision

• Platypus - R package for object detection and image segmentation
• imageseg: An R package for deep learning-based image segmentation
• Image segmentation with U-Net in Keras

Python

• Sashimi: A toolkit for facilitating high-throughput organismal image segmentation using deep learning GitHub, Paper