bug: User-defined treesitter queries are overridden after startup

[scheatkode]

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• I have read all the lazy docs
• I have searched the existing issues of lazy
• I have searched the exsiting issues of the plugin I have a problem with

Neovim version (nvim -v)

0.8.1

Operating system/version

Linux 6.1.1-arch1-1

Describe the bug

Neovim allows for custom queries to be defined in the runtimepath under queries/ and after/queries/. These are loaded fine when Neovim starts but are overridden when lazy.nvim takes over.

Steps To Reproduce

The reproduction is scripted in the minimal init.lua.

Expected Behavior

The usual loading priority assumption applies, e.g.: builtin < plugin < custom

Repro

-- DO NOT change the paths and don't remove the colorscheme
local root = vim.fn.fnamemodify('./.repro', ':p')

-- set stdpaths to use .repro
for _, name in ipairs({ 'config', 'data', 'state', 'cache' }) do
	vim.env[('XDG_%s_HOME'):format(name:upper())] = root .. name
end

-- bootstrap lazy
local lazypath = root .. '/plugins/lazy.nvim'
if not vim.loop.fs_stat(lazypath) then
	vim.fn.system({
		'git',
		'clone',
		'--filter=blob:none',
		'--single-branch',
		'https://github.com/folke/lazy.nvim.git',
		lazypath,
	})
end
vim.opt.runtimepath:prepend(lazypath)

-- install plugins
local plugins = {
	'folke/tokyonight.nvim',
	-- add any other plugins here

	{
		'nvim-treesitter/nvim-treesitter',

		dependencies = {
			'nvim-treesitter/nvim-treesitter-textobjects',
		},

		build = function()
			require('nvim-treesitter.install').update({ with_sync = true })
		end,
	},
}

-- write dummy query files
local queries = string.format('%s/queries/lua', vim.fn.stdpath('config'))
local queries_after =
	string.format('%s/after/queries/lua', vim.fn.stdpath('config'))
os.execute(string.format('mkdir -p %s %s', queries, queries_after))

-- for some reason `io.open` doesn't work when first starting neovim
os.execute(
	string.format(
		"echo '(arguments  (_) @a_dummy_capture)' > %s/textobjects.scm",
		queries
	)
)
os.execute(
	string.format(
		"echo '(arguments  (_) @a_dummy_capture)' > %s/textobjects.scm",
		queries_after
	)
)

-- store query files found by neovim before setting up lazy.nvim
local before = vim.treesitter.get_query_files('lua', 'textobjects')

require('lazy').setup(plugins, {
	root = root .. '/plugins',
})

vim.cmd.colorscheme('tokyonight')
-- add anything else here
vim.api.nvim_create_autocmd('User', {
	once = true,
	pattern = { 'LazyDone', 'LazyVimStarted' },
	callback = function()
		local after = vim.treesitter.get_query_files('lua', 'textobjects')

		print('query files before loading plugin')
		vim.pretty_print(before)
		print('query files after loading plugin')
		vim.pretty_print(after)

		vim.defer_fn(function()
			vim.api.nvim_feedkeys(
				vim.api.nvim_replace_termcodes(':5messages<CR>', true, true, true),
				't',
				false
			)
		end, 2000)
	end,
})

Edit: Thank you for this amazing plugin !

[folke]

Should be fixed now

[folke]

My fix breaks other plugins. Need to look into this further

[folke]

I've reverted my change for now. Need to look into this further to see how to properly solve this.