ci.yml

name: CI

on:
  push:
    branches:
      - main
    tags:
      - "v*"
  pull_request:
  workflow_dispatch:
  schedule:
    # run every week (for --pre release tests)
    - cron: "0 0 * * 0"

# cancel in-progress runs that use the same workflow and branch
concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  check-manifest:
    # check-manifest is a tool that checks that all files in version control are
    # included in the sdist (unless explicitly excluded)
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - run: pipx run check-manifest

  test:
    name: ${{ matrix.platform }} (${{ matrix.python-version }})
    runs-on: ${{ matrix.platform }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.10", "3.11", "3.12"]
        # Skip Windows for now It's seems there are some issues with the
        # ZarrV3 on Windows
        platform: [ubuntu-latest, macos-latest, windows-latest]
        # platform: [ubuntu-latest, macos-latest]

    steps:
      - uses: actions/checkout@v4

      - name: 🐍 Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache-dependency-path: "pyproject.toml"
          cache: "pip"

      - name: Install Dependencies
        run: |
          python -m pip install -U pip
          # if running a cron job, we add the --pre flag to test against pre-releases
          python -m pip install .[test] ${{ github.event_name == 'schedule' && '--pre' || ''  }}

      - name: 🧪 Run Tests
        run: pytest

      # If something goes wrong with --pre tests, we can open an issue in the repo
      - name: 📝 Report --pre Failures
        if: failure() && github.event_name == 'schedule'
        uses: JasonEtco/create-an-issue@v2
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
          PLATFORM: ${{ matrix.platform }}
          PYTHON: ${{ matrix.python-version }}
          RUN_ID: ${{ github.run_id }}
          TITLE: "[test-bot] pip install --pre is failing"
        with:
          filename: .github/TEST_FAIL_TEMPLATE.md
          update_existing: true

      - name: Coverage
        if: ${{ matrix.python-version == '3.10' }} && ${{ matrix.platform == 'ubuntu-latest' }}
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          files: /home/runner/work/ngio/ngio/coverage.xml

  zarrv3:
    name: Test zarr-python v3 compatibility
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v4

      - name: 🐍 Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.11"
          cache-dependency-path: "pyproject.toml"
          cache: "pip"

      - name: Install Dependencies
        run: |
          python -m pip install -U pip
          # if running a cron job, we add the --pre flag to test against pre-releases
          python -m pip install .[dev3] ${{ github.event_name == 'schedule' && '--pre' || ''  }}

      - name: 🧪 Run Tests
        run: pytest
        continue-on-error: true

  deploy:
    name: Deploy
    needs: test
    if: success() && startsWith(github.ref, 'refs/tags/') && github.event_name != 'schedule'
    runs-on: ubuntu-latest

    permissions:
      # IMPORTANT: this permission is mandatory for trusted publishing on PyPi
      # see https://docs.pypi.org/trusted-publishers/
      id-token: write
      # This permission allows writing releases
      contents: write

    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: 🐍 Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.x"

      - name: 👷 Build
        run: |
          python -m pip install build
          python -m build

      - name: 🚢 Publish to PyPI
        uses: pypa/gh-action-pypi-publish@release/v1

      - uses: softprops/action-gh-release@v2
        with:
          generate_release_notes: true
          files: './dist/*'