diff --git a/erpnext/stock/doctype/purchase_receipt/purchase_receipt.py b/erpnext/stock/doctype/purchase_receipt/purchase_receipt.py
index 8ed59f452e22..faf305cfe9ce 100644
--- a/erpnext/stock/doctype/purchase_receipt/purchase_receipt.py
+++ b/erpnext/stock/doctype/purchase_receipt/purchase_receipt.py
@@ -883,6 +883,8 @@ def get_billed_amount_against_po(po_items):
 
 def update_billing_percentage(pr_doc, update_modified=True, adjust_incoming_rate=False):
 	# Update Billing % based on pending accepted qty
+	buying_settings = frappe.get_single("Buying Settings")
+
 	total_amount, total_billed_amount = 0, 0
 	item_wise_returned_qty = get_item_wise_returned_qty(pr_doc)
 
@@ -890,10 +892,15 @@ def update_billing_percentage(pr_doc, update_modified=True, adjust_incoming_rate
 		returned_qty = flt(item_wise_returned_qty.get(item.name))
 		returned_amount = flt(returned_qty) * flt(item.rate)
 		pending_amount = flt(item.amount) - returned_amount
-		total_billable_amount = pending_amount if item.billed_amt <= pending_amount else item.billed_amt
+		if buying_settings.bill_for_rejected_quantity_in_purchase_invoice:
+			pending_amount = flt(item.amount)
+
+		total_billable_amount = abs(flt(item.amount))
+		if pending_amount > 0:
+			total_billable_amount = pending_amount if item.billed_amt <= pending_amount else item.billed_amt
 
 		total_amount += total_billable_amount
-		total_billed_amount += flt(item.billed_amt)
+		total_billed_amount += abs(flt(item.billed_amt))
 
 		if pr_doc.get("is_return") and not total_amount and total_billed_amount:
 			total_amount = total_billed_amount
diff --git a/erpnext/stock/doctype/purchase_receipt/test_purchase_receipt.py b/erpnext/stock/doctype/purchase_receipt/test_purchase_receipt.py
index 2525120cefd8..adb6e6905964 100644
--- a/erpnext/stock/doctype/purchase_receipt/test_purchase_receipt.py
+++ b/erpnext/stock/doctype/purchase_receipt/test_purchase_receipt.py
@@ -2683,6 +2683,54 @@ def test_same_stock_and_transaction_uom_conversion_factor(self):
 
 		self.assertEqual(pr.items[0].conversion_factor, 1.0)
 
+	def test_purchase_return_partial_debit_note(self):
+		pr = make_purchase_receipt(
+			company="_Test Company with perpetual inventory",
+			warehouse="Stores - TCP1",
+			supplier_warehouse="Work In Progress - TCP1",
+		)
+
+		return_pr = make_purchase_receipt(
+			company="_Test Company with perpetual inventory",
+			warehouse="Stores - TCP1",
+			supplier_warehouse="Work In Progress - TCP1",
+			is_return=1,
+			return_against=pr.name,
+			qty=-2,
+			do_not_submit=1,
+		)
+		return_pr.items[0].purchase_receipt_item = pr.items[0].name
+		return_pr.submit()
+
+		# because new_doc isn't considering is_return portion of status_updater
+		returned = frappe.get_doc("Purchase Receipt", return_pr.name)
+		returned.update_prevdoc_status()
+		pr.load_from_db()
+
+		# Check if Original PR updated
+		self.assertEqual(pr.items[0].returned_qty, 2)
+		self.assertEqual(pr.per_returned, 40)
+
+		# Create first partial debit_note
+		pi_1 = make_purchase_invoice(return_pr.name)
+		pi_1.items[0].qty = -1
+		pi_1.submit()
+
+		# Check if the first partial debit billing percentage got updated
+		return_pr.reload()
+		self.assertEqual(return_pr.per_billed, 50)
+		self.assertEqual(return_pr.status, "Partly Billed")
+
+		# Create second partial debit_note to complete the debit note
+		pi_2 = make_purchase_invoice(return_pr.name)
+		pi_2.items[0].qty = -1
+		pi_2.submit()
+
+		# Check if the second partial debit note billing percentage got updated
+		return_pr.reload()
+		self.assertEqual(return_pr.per_billed, 100)
+		self.assertEqual(return_pr.status, "Completed")
+
 
 def prepare_data_for_internal_transfer():
 	from erpnext.accounts.doctype.sales_invoice.test_sales_invoice import create_internal_supplier