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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(filter_genes)
export(get_gene_id)
export(make_dds)
export(mean_sd_plot)
export(plot_biotypes)
export(plot_chromosome)
export(plot_gene)
export(plot_gene_detection)
export(plot_library_complexity)
export(plot_loadings)
export(plot_ma)
export(plot_pca)
export(plot_pca_scatters)
export(plot_sample_MAs)
export(plot_sample_clustering)
export(plot_total_counts)
export(plot_within_level_sample_MAs)
export(save_plots_to_pdf)
importFrom(BiocGenerics,colnames)
importFrom(DESeq2,counts)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_path)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_color_viridis_c)
importFrom(ggplot2,scale_color_viridis_d)
importFrom(ggplot2,scale_shape_discrete)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_x_sqrt)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,scale_y_sqrt)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,ylim)
importFrom(magrittr,"%>%")
importFrom(matrixStats,rowMedians)
importFrom(purrr,map)
importFrom(purrr,map_dbl)
importFrom(purrr,map_dfr)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stringr,str_c)
importFrom(stringr,str_detect)
importFrom(stringr,str_sort)
importFrom(tibble,as_tibble)
importFrom(tibble,column_to_rownames)
importFrom(tibble,enframe)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(utils,head)