added util #74
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: ci | |
| on: | |
| pull_request: | |
| paths: | |
| # NOTE: keep these paths in sync with the paths that trigger the | |
| # fuzzydata Github Actions in .github/workflows/fuzzydata-test.yml | |
| - .github/workflows/** | |
| - .github/actions/** | |
| - '!.github/workflows/push-to-main.yml' | |
| - asv_bench/** | |
| - modin/** | |
| - requirements/** | |
| - scripts/** | |
| - environment-dev.yml | |
| - requirements-dev.txt | |
| - setup.cfg | |
| - setup.py | |
| - versioneer.py | |
| push: | |
| schedule: | |
| - cron: "30 2 * * WED" | |
| - cron: "30 2 * * THU" | |
| concurrency: | |
| # Cancel other jobs in the same branch. We don't care whether CI passes | |
| # on old commits. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| env: | |
| MODIN_GITHUB_CI: true | |
| jobs: | |
| python-filter: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| python-version: ${{ steps.choose.outputs.python-version }} | |
| steps: | |
| - id: choose | |
| run: | | |
| if [[ "${{ github.event.schedule }}" = "30 2 * * WED" ]] | |
| then | |
| echo "python-version=3.10" >> "$GITHUB_OUTPUT" | |
| elif [[ "${{ github.event.schedule }}" = "30 2 * * THU" ]] | |
| then | |
| echo "python-version=3.11" >> "$GITHUB_OUTPUT" | |
| else | |
| echo "python-version=3.9" >> "$GITHUB_OUTPUT" | |
| fi | |
| lint-mypy: | |
| needs: [python-filter] | |
| name: lint (mypy) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python-only | |
| with: | |
| python-version: ${{ needs.python-filter.outputs.python-version }} | |
| - run: pip install -r requirements-dev.txt | |
| - run: mypy --config-file mypy.ini | |
| lint-flake8: | |
| needs: [python-filter] | |
| name: lint (flake8) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python-only | |
| with: | |
| python-version: ${{ needs.python-filter.outputs.python-version }} | |
| # NOTE: If you are changing the set of packages installed here, make sure that | |
| # the dev requirements match them. | |
| - run: pip install flake8 flake8-print flake8-no-implicit-concat | |
| # NOTE: keep the flake8 command here in sync with the pre-commit hook in | |
| # /contributing/pre-commit | |
| - run: flake8 modin/ asv_bench/benchmarks scripts/doc_checker.py | |
| test-api-and-no-engine: | |
| needs: [python-filter] | |
| name: Test API, headers and no-engine mode | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: requirements/requirements-no-engine.yml | |
| python-version: ${{ needs.python-filter.outputs.python-version }} | |
| - run: python -m pytest modin/tests/pandas/test_api.py | |
| - run: python -m pytest modin/tests/test_executions_api.py | |
| - run: python -m pytest modin/tests/test_headers.py | |
| - run: python -m pytest modin/tests/core/test_dispatcher.py::test_add_option | |
| - uses: ./.github/actions/upload-coverage | |
| test-clean-install: | |
| needs: [lint-flake8, python-filter] | |
| strategy: | |
| matrix: | |
| os: | |
| - ubuntu | |
| - windows | |
| runs-on: ${{ matrix.os }}-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: test-clean-install-${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python-only | |
| with: | |
| python-version: ${{ needs.python-filter.outputs.python-version }} | |
| - run: python -m pip install -e ".[all]" | |
| - name: Ensure Ray and Dask engines start up | |
| run: | | |
| MODIN_ENGINE=dask python -c "import modin.pandas as pd; print(pd.DataFrame([1,2,3]))" | |
| MODIN_ENGINE=ray python -c "import modin.pandas as pd; print(pd.DataFrame([1,2,3]))" | |
| - name: Ensure MPI engine start up | |
| # Install a working MPI implementation beforehand so mpi4py can link to it | |
| run: | | |
| sudo apt install libmpich-dev | |
| python -m pip install -e ".[mpi]" | |
| MODIN_ENGINE=unidist UNIDIST_BACKEND=mpi mpiexec -n 1 python -c "import modin.pandas as pd; print(pd.DataFrame([1,2,3]))" | |
| if: matrix.os == 'ubuntu' | |
| test-internals: | |
| needs: [lint-flake8, python-filter] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: test-internals | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: environment-dev.yml | |
| python-version: ${{ needs.python-filter.outputs.python-version }} | |
| - name: Internals tests | |
| run: python -m pytest modin/tests/core/test_dispatcher.py | |
| - run: python -m pytest modin/tests/config | |
| - run: python -m pytest modin/tests/test_envvar_catcher.py | |
| - run: python -m pytest modin/tests/core/storage_formats/base/test_internals.py | |
| - run: python -m pytest modin/tests/core/storage_formats/pandas/test_internals.py | |
| - run: python -m pytest modin/tests/test_envvar_npartitions.py | |
| - run: python -m pytest modin/tests/test_utils.py | |
| - run: python -m pytest asv_bench/test/test_utils.py | |
| - run: python -m pytest modin/tests/interchange/dataframe_protocol/base | |
| - run: python -m pytest modin/tests/test_dataframe_api_standard.py | |
| - run: python -m pytest modin/tests/test_logging.py | |
| - uses: ./.github/actions/upload-coverage | |
| test-defaults: | |
| needs: [lint-flake8, python-filter] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| execution: [BaseOnPython] | |
| env: | |
| MODIN_TEST_DATASET_SIZE: "small" | |
| name: Test ${{ matrix.execution }} execution, Python ${{ needs.python-filter.outputs.python-version }}" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: environment-dev.yml | |
| python-version: ${{ needs.python-filter.outputs.python-version }} | |
| - name: Install HDF5 | |
| run: sudo apt update && sudo apt install -y libhdf5-dev | |
| - name: xgboost tests | |
| run: | | |
| # TODO(https://github.com/modin-project/modin/issues/5194): Uncap xgboost | |
| # when we use collective instead of rabit. | |
| mamba install "xgboost>=1.7.1,<2.0.0" scikit-learn -c conda-forge | |
| python -m pytest modin/tests/experimental/xgboost/test_default.py --execution=${{ matrix.execution }} | |
| - run: python -m pytest -n 2 modin/tests/core/storage_formats/base/test_internals.py --execution=${{ matrix.execution }} | |
| - uses: ./.github/actions/run-core-tests | |
| with: | |
| runner: python -m pytest --execution=${{ matrix.execution }} | |
| - uses: ./.github/actions/upload-coverage | |
| test-asv-benchmarks: | |
| if: github.event_name == 'pull_request' | |
| needs: [lint-flake8] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| MODIN_ENGINE: ray | |
| MODIN_MEMORY: 1000000000 | |
| MODIN_TEST_DATASET_SIZE: small | |
| name: test-asv-benchmarks | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-activate-base: true | |
| activate-environment: "" | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| - name: Running benchmarks | |
| run: | | |
| git remote add upstream https://github.com/modin-project/modin.git | |
| git fetch upstream | |
| if git diff upstream/main --name-only | grep -q "^asv_bench/"; then | |
| cd asv_bench | |
| mamba env create -f ../environment-dev.yml | |
| conda activate modin | |
| pip install .. | |
| asv machine --yes | |
| # check Modin on Ray | |
| asv run --quick --dry-run --python=same --strict --show-stderr --launch-method=spawn \ | |
| -b ^benchmarks -b ^io -b ^scalability | tee benchmarks.log | |
| # check pure pandas | |
| MODIN_ASV_USE_IMPL=pandas asv run --quick --dry-run --python=same --strict --show-stderr --launch-method=spawn \ | |
| -b ^benchmarks -b ^io | tee benchmarks.log | |
| else | |
| echo "Benchmarks did not run, no changes detected" | |
| fi | |
| if: always() | |
| - name: Publish benchmarks artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Benchmarks log | |
| path: asv_bench/benchmarks.log | |
| if: failure() | |
| execution-filter: | |
| # see if execution backend-specific changes were made | |
| runs-on: ubuntu-latest | |
| outputs: | |
| ray: ${{ steps.filter.outputs.ray }} | |
| dask: ${{ steps.filter.outputs.dask }} | |
| unidist: ${{ steps.filter.outputs.unidist }} | |
| engines: ${{ steps.engines.outputs.engines }} | |
| experimental: ${{ steps.experimental.outputs.experimental }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: dorny/paths-filter@v3 | |
| id: filter | |
| with: | |
| filters: | | |
| shared: &shared | |
| - 'modin/core/execution/dispatching/**' | |
| ray: | |
| - *shared | |
| - 'modin/core/execution/ray/**' | |
| dask: | |
| - *shared | |
| - 'modin/core/execution/dask/**' | |
| unidist: | |
| - *shared | |
| - 'modin/core/execution/unidist/**' | |
| experimental: | |
| - 'modin/experimental/**' | |
| - uses: actions/setup-python@v5 | |
| - id: engines | |
| run: | | |
| python -c "import sys, json; print('engines=' + json.dumps(['python'] + (sys.argv[1] == 'true' and ['ray'] or []) + (sys.argv[2] == 'true' and ['dask'] or []) ))" \ | |
| "${{ steps.filter.outputs.ray }}" "${{ steps.filter.outputs.dask }}" >> $GITHUB_OUTPUT | |
| test-all-unidist: | |
| needs: [lint-flake8, execution-filter, python-filter] | |
| if: github.event_name == 'push' || needs.execution-filter.outputs.unidist == 'true' | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: [ "${{ needs.python-filter.outputs.python-version }}" ] | |
| unidist-backend: ["mpi"] | |
| env: | |
| MODIN_ENGINE: "Unidist" | |
| UNIDIST_BACKEND: ${{matrix.unidist-backend}} | |
| # Only test reading from SQL server and postgres on ubuntu for now. | |
| # Eventually, we should test on Windows, too, but we will have to set up | |
| # the servers differently. | |
| MODIN_TEST_READ_FROM_SQL_SERVER: true | |
| MODIN_TEST_READ_FROM_POSTGRES: true | |
| name: test-ubuntu (engine unidist ${{matrix.unidist-backend}}, python ${{matrix.python-version}}) | |
| services: | |
| moto: | |
| image: motoserver/moto | |
| ports: | |
| - 5000:5000 | |
| env: | |
| AWS_ACCESS_KEY_ID: foobar_key | |
| AWS_SECRET_ACCESS_KEY: foobar_secret | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: requirements/env_unidist_linux.yml | |
| activate-environment: modin_on_unidist | |
| python-version: ${{matrix.python-version}} | |
| - name: Install HDF5 | |
| run: sudo apt update && sudo apt install -y libhdf5-dev | |
| - name: Set up postgres | |
| # Locally, specifying port 2345:5432 works, but 2345:2345 and 5432:5432 do not. This solution is from | |
| # https://stackoverflow.com/questions/36415654/cant-connect-docker-postgresql-9-3 | |
| run: | | |
| sudo docker pull postgres | |
| sudo docker run --name some-postgres -e POSTGRES_USER=sa -e POSTGRES_PASSWORD=Strong.Pwd-123 -e POSTGRES_DB=postgres -d -p 2345:5432 postgres | |
| - run: mpiexec -n 1 python -m pytest modin/tests/pandas/internals/test_benchmark_mode.py | |
| - run: mpiexec -n 1 python -m pytest modin/tests/pandas/internals/test_repartition.py | |
| - run: mpiexec -n 1 python -m pytest modin/tests/test_partition_api.py | |
| - uses: ./.github/actions/run-core-tests | |
| with: | |
| runner: mpiexec -n 1 python -m pytest | |
| parallel: "" | |
| - run: mpiexec -n 1 python -m pytest modin/tests/numpy | |
| - run: chmod +x ./.github/workflows/sql_server/set_up_sql_server.sh | |
| - run: ./.github/workflows/sql_server/set_up_sql_server.sh | |
| # need an extra argument "genv" to set environment variables for mpiexec. We need | |
| # these variables to test writing to the mock s3 filesystem. | |
| - uses: nick-fields/retry@v3 | |
| # to avoid issues with non-stable `to_csv` tests for unidist on MPI backend. | |
| # for details see: https://github.com/modin-project/modin/pull/6776 | |
| with: | |
| timeout_minutes: 15 | |
| max_attempts: 3 | |
| command: | | |
| conda run --no-capture-output -n modin_on_unidist mpiexec -n 1 -genv AWS_ACCESS_KEY_ID foobar_key \ | |
| -genv AWS_SECRET_ACCESS_KEY foobar_secret python -m pytest modin/tests/pandas/test_io.py --verbose | |
| - run: | | |
| mpiexec -n 1 -genv AWS_ACCESS_KEY_ID foobar_key -genv AWS_SECRET_ACCESS_KEY foobar_secret \ | |
| python -m pytest modin/tests/experimental/test_io_exp.py | |
| - run: mpiexec -n 1 python -m pytest modin/tests/interchange/dataframe_protocol/test_general.py | |
| - run: mpiexec -n 1 python -m pytest modin/tests/interchange/dataframe_protocol/pandas/test_protocol.py | |
| - run: | | |
| python -m pip install lazy_import | |
| mpiexec -n 1 python -m pytest modin/tests/pandas/integrations/ | |
| - uses: ./.github/actions/upload-coverage | |
| test-all: | |
| needs: [lint-flake8, execution-filter, python-filter] | |
| strategy: | |
| matrix: | |
| os: | |
| - ubuntu | |
| - windows | |
| python-version: [ "${{ needs.python-filter.outputs.python-version }}" ] | |
| engine: ${{ fromJSON( github.event_name == 'push' && '["python", "ray", "dask"]' || needs.execution-filter.outputs.engines ) }} | |
| test_task: | |
| - group_1 | |
| - group_2 | |
| - group_3 | |
| - group_4 | |
| exclude: # python engine only have one task group that contains all the tests | |
| - engine: "python" | |
| test_task: "group_2" | |
| - engine: "python" | |
| test_task: "group_3" | |
| - engine: "python" | |
| test_task: "group_4" | |
| runs-on: ${{ matrix.os }}-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| MODIN_ENGINE: ${{matrix.engine}} | |
| # Only test reading from SQL server and postgres on ubuntu for now. | |
| # Eventually, we should test on Windows, too, but we will have to set up | |
| # the servers differently. | |
| MODIN_TEST_READ_FROM_SQL_SERVER: ${{ matrix.os == 'ubuntu' }} | |
| MODIN_TEST_READ_FROM_POSTGRES: ${{ matrix.os == 'ubuntu' }} | |
| name: test-${{ matrix.os }} (engine ${{matrix.engine}}, python ${{matrix.python-version}}, ${{matrix.test_task}}) | |
| services: | |
| # Using workaround https://github.com/actions/runner/issues/822#issuecomment-1524826092 | |
| moto: | |
| # we only need moto service on Ubuntu and for group_4 task or python engine | |
| image: ${{ (matrix.os == 'ubuntu' && (matrix.engine == 'python' || matrix.test_task == 'group_4')) && 'motoserver/moto' || '' }} | |
| ports: | |
| - 5000:5000 | |
| env: | |
| AWS_ACCESS_KEY_ID: foobar_key | |
| AWS_SECRET_ACCESS_KEY: foobar_secret | |
| steps: | |
| - name: Limit ray memory | |
| run: echo "MODIN_MEMORY=1000000000" >> $GITHUB_ENV | |
| if: matrix.os == 'ubuntu' && matrix.engine == 'ray' | |
| - name: Tell Modin to use existing ray cluster | |
| run: echo "MODIN_RAY_CLUSTER=True" >> $GITHUB_ENV | |
| if: matrix.os == 'windows' && matrix.engine == 'ray' | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: environment-dev.yml | |
| python-version: ${{matrix.python-version}} | |
| - name: Start local ray cluster | |
| # Try a few times to start ray to work around | |
| # https://github.com/modin-project/modin/issues/4562 | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 5 | |
| max_attempts: 5 | |
| command: ray start --head --port=6379 --object-store-memory=1000000000 | |
| if: matrix.os == 'windows' && matrix.engine == 'ray' | |
| - name: Install HDF5 | |
| run: sudo apt update && sudo apt install -y libhdf5-dev | |
| if: matrix.os == 'ubuntu' | |
| - name: Set up postgres | |
| # Locally, specifying port 2345:5432 works, but 2345:2345 and 5432:5432 do not. This solution is from | |
| # https://stackoverflow.com/questions/36415654/cant-connect-docker-postgresql-9-3 | |
| run: | | |
| sudo docker pull postgres | |
| sudo docker run --name some-postgres -e POSTGRES_USER=sa -e POSTGRES_PASSWORD=Strong.Pwd-123 -e POSTGRES_DB=postgres -d -p 2345:5432 postgres | |
| if: matrix.os == 'ubuntu' | |
| - run: python -m pytest modin/tests/pandas/internals/test_benchmark_mode.py | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_1' | |
| - run: python -m pytest modin/tests/pandas/internals/test_repartition.py | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_1' | |
| - run: python -m pytest modin/tests/test_partition_api.py | |
| if: matrix.engine != 'python' && matrix.test_task == 'group_1' | |
| - name: xgboost tests | |
| run: | | |
| # TODO(https://github.com/modin-project/modin/issues/5194): Uncap xgboost | |
| # when we use collective instead of rabit. | |
| mamba install "xgboost>=1.7.1,<2.0.0" scikit-learn -c conda-forge | |
| python -m pytest -n 2 \ | |
| modin/tests/experimental/xgboost/test_default.py \ | |
| modin/tests/experimental/xgboost/test_xgboost.py \ | |
| modin/tests/experimental/xgboost/test_dmatrix.py | |
| if: matrix.os != 'windows' && matrix.test_task == 'group_1' | |
| - run: python -m pytest -n 2 modin/tests/experimental/test_pipeline.py | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_1' | |
| - uses: ./.github/actions/run-core-tests/group_1 | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_1' | |
| - uses: ./.github/actions/run-core-tests/group_2 | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_2' | |
| - uses: ./.github/actions/run-core-tests/group_3 | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_3' | |
| - uses: ./.github/actions/run-core-tests/group_4 | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_4' | |
| - run: python -m pytest -n 2 modin/tests/numpy | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_4' | |
| - run: chmod +x ./.github/workflows/sql_server/set_up_sql_server.sh | |
| if: matrix.os == 'ubuntu' && (matrix.engine == 'python' || matrix.test_task == 'group_4') | |
| - run: ./.github/workflows/sql_server/set_up_sql_server.sh | |
| if: matrix.os == 'ubuntu' && (matrix.engine == 'python' || matrix.test_task == 'group_4') | |
| # Do not add parallelism (`-n` argument) here - it will cause mock S3 service to fail. | |
| - run: python -m pytest modin/tests/pandas/test_io.py --verbose | |
| timeout-minutes: 60 | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_4' | |
| - run: python -m pytest modin/tests/experimental/test_io_exp.py | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_4' | |
| - run: python -m pytest modin/tests/interchange/dataframe_protocol/test_general.py | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_4' | |
| - run: python -m pytest modin/tests/interchange/dataframe_protocol/pandas/test_protocol.py | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_4' | |
| - run: python -m pytest modin/tests/polars/test_dataframe.py | |
| - run: | | |
| python -m pip install lazy_import | |
| python -m pytest modin/tests/pandas/integrations/ | |
| if: matrix.engine == 'python' || matrix.test_task == 'group_4' | |
| - uses: ./.github/actions/upload-coverage | |
| - name: Stop local ray cluster | |
| run: ray stop | |
| if: matrix.os == 'windows' && matrix.engine == 'ray' | |
| - name: Rename the dirs with conda packages so it won't be deleted, it's too slow on Windows. | |
| run: | | |
| mkdir -p "${CONDA_PKGS_DIR}_do_not_cache" && \ | |
| find "${CONDA_PKGS_DIR}" -mindepth 1 -maxdepth 1 -type d -exec mv {} "${CONDA_PKGS_DIR}_do_not_cache" \; | |
| if: matrix.os == 'windows' | |
| test-sanity: | |
| needs: [lint-flake8, execution-filter, python-filter] | |
| if: github.event_name == 'pull_request' | |
| strategy: | |
| matrix: | |
| os: | |
| - ubuntu | |
| - windows | |
| python-version: [ "${{ needs.python-filter.outputs.python-version }}" ] | |
| execution: | |
| - name: ray | |
| shell-ex: "python -m pytest" | |
| if: needs.execution-filter.ray != 'true' | |
| - name: dask | |
| shell-ex: "python -m pytest" | |
| if: needs.execution-filter.dask != 'true' | |
| - name: unidist | |
| shell-ex: "mpiexec -n 1 -genv AWS_ACCESS_KEY_ID foobar_key -genv AWS_SECRET_ACCESS_KEY foobar_secret python -m pytest" | |
| if: needs.execution-filter.unidist != 'true' | |
| runs-on: ${{ matrix.os }}-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| MODIN_ENGINE: ${{ matrix.execution.name }} | |
| UNIDIST_BACKEND: "mpi" | |
| PARALLEL: ${{ matrix.execution.name != 'unidist' && matrix.os != 'windows' && '-n 2' || '' }} | |
| name: test-${{ matrix.os }}-sanity (engine ${{ matrix.execution.name }}, python ${{matrix.python-version}}) | |
| services: | |
| moto: | |
| image: ${{ matrix.os != 'windows' && 'motoserver/moto' || '' }} | |
| ports: | |
| - 5000:5000 | |
| env: | |
| AWS_ACCESS_KEY_ID: foobar_key | |
| AWS_SECRET_ACCESS_KEY: foobar_secret | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: ${{ matrix.os == 'ubuntu' && matrix.execution.name == 'unidist' && 'requirements/env_unidist_linux.yml' || matrix.os == 'windows' && matrix.execution.name == 'unidist' && 'requirements/env_unidist_win.yml' || 'environment-dev.yml' }} | |
| activate-environment: ${{ matrix.execution.name == 'unidist' && 'modin_on_unidist' || 'modin' }} | |
| python-version: ${{matrix.python-version}} | |
| - name: Install HDF5 | |
| run: sudo apt update && sudo apt install -y libhdf5-dev | |
| if: matrix.os != 'windows' | |
| - name: Limit ray memory | |
| run: echo "MODIN_MEMORY=1000000000" >> $GITHUB_ENV | |
| if: matrix.os != 'windows' && matrix.execution.name == 'ray' | |
| - name: Tell Modin to use existing ray cluster | |
| run: echo "MODIN_RAY_CLUSTER=True" >> $GITHUB_ENV | |
| if: matrix.os == 'windows' && matrix.execution.name == 'ray' | |
| - name: Start local ray cluster | |
| # Try a few times to start ray to work around | |
| # https://github.com/modin-project/modin/issues/4562 | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 5 | |
| max_attempts: 5 | |
| command: ray start --head --port=6379 --object-store-memory=1000000000 | |
| if: matrix.os == 'windows' && matrix.execution.name == 'ray' | |
| - run: MODIN_BENCHMARK_MODE=True ${{ matrix.execution.shell-ex }} modin/tests/pandas/internals/test_benchmark_mode.py | |
| - run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/pandas/internals/test_repartition.py | |
| - run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/test_partition_api.py | |
| - run: ${{ matrix.execution.shell-ex }} modin/tests/pandas/extensions | |
| - name: xgboost tests | |
| run: | | |
| # TODO(https://github.com/modin-project/modin/issues/5194): Uncap xgboost | |
| # when we use collective instead of rabit. | |
| mamba install "xgboost>=1.7.1,<2.0.0" scikit-learn -c conda-forge | |
| ${{ matrix.execution.shell-ex }} $PARALLEL \ | |
| modin/tests/experimental/xgboost/test_default.py \ | |
| modin/tests/experimental/xgboost/test_xgboost.py \ | |
| modin/tests/experimental/xgboost/test_dmatrix.py | |
| if: matrix.os != 'windows' && needs.execution-filter.experimental == 'true' | |
| - run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/experimental/test_pipeline.py | |
| if: matrix.os != 'windows' && matrix.execution.name != 'unidist' && needs.execution-filter.experimental == 'true' | |
| - name: "test DF: binary, default, iter" | |
| run: | | |
| ${{ matrix.execution.shell-ex }} $PARALLEL \ | |
| modin/tests/pandas/dataframe/test_binary.py \ | |
| modin/tests/pandas/dataframe/test_default.py \ | |
| modin/tests/pandas/dataframe/test_iter.py | |
| if: matrix.os != 'windows' | |
| - name: "test DF: reduce, udf, window, pickle" | |
| run: | | |
| ${{ matrix.execution.shell-ex }} $PARALLEL \ | |
| modin/tests/pandas/dataframe/test_reduce.py \ | |
| modin/tests/pandas/dataframe/test_udf.py \ | |
| modin/tests/pandas/dataframe/test_window.py \ | |
| modin/tests/pandas/dataframe/test_pickle.py | |
| if: matrix.os != 'windows' | |
| - run: ${{ matrix.execution.shell-ex }} modin/tests/pandas/test_series.py | |
| if: matrix.execution.name == 'ray' | |
| - run: ${{ matrix.execution.shell-ex }} -m "not exclude_in_sanity" modin/tests/pandas/test_series.py | |
| if: matrix.execution.name != 'ray' | |
| - run: ${{ matrix.execution.shell-ex }} modin/tests/pandas/dataframe/test_map_metadata.py | |
| if: matrix.execution.name == 'ray' | |
| - run: ${{ matrix.execution.shell-ex }} -m "not exclude_in_sanity" modin/tests/pandas/dataframe/test_map_metadata.py | |
| if: matrix.execution.name != 'ray' | |
| - name: "test rolling, expanding, reshape, general, concat" | |
| run: | | |
| ${{ matrix.execution.shell-ex }} $PARALLEL \ | |
| modin/tests/pandas/test_rolling.py \ | |
| modin/tests/pandas/test_expanding.py \ | |
| modin/tests/pandas/test_reshape.py \ | |
| modin/tests/pandas/test_general.py \ | |
| modin/tests/pandas/test_concat.py | |
| if: matrix.os != 'windows' | |
| - run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/numpy | |
| - run: ${{ matrix.execution.shell-ex }} -m "not exclude_in_sanity" modin/tests/pandas/test_io.py --verbose | |
| if: matrix.execution.name != 'unidist' | |
| - uses: nick-fields/retry@v3 | |
| # to avoid issues with non-stable `to_csv` tests for unidist on MPI backend. | |
| # for details see: https://github.com/modin-project/modin/pull/6776 | |
| with: | |
| timeout_minutes: 15 | |
| max_attempts: 3 | |
| command: conda run --no-capture-output -n modin_on_unidist ${{ matrix.execution.shell-ex }} -m "not exclude_in_sanity" modin/tests/pandas/test_io.py --verbose | |
| if: matrix.execution.name == 'unidist' | |
| - run: ${{ matrix.execution.shell-ex }} modin/tests/experimental/test_io_exp.py | |
| - run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/interchange/dataframe_protocol/test_general.py | |
| - run: ${{ matrix.execution.shell-ex }} $PARALLEL modin/tests/interchange/dataframe_protocol/pandas/test_protocol.py | |
| - name: Stop local ray cluster | |
| run: ray stop | |
| if: matrix.os == 'windows' && matrix.execution.name == 'ray' | |
| - name: Rename the dirs with conda packages so it won't be deleted, it's too slow on Windows. | |
| run: | | |
| mkdir -p "${CONDA_PKGS_DIR}_do_not_cache" && \ | |
| find "${CONDA_PKGS_DIR}" -mindepth 1 -maxdepth 1 -type d -exec mv {} "${CONDA_PKGS_DIR}_do_not_cache" \; | |
| if: matrix.os == 'windows' | |
| - uses: ./.github/actions/upload-coverage | |
| test-experimental: | |
| needs: [lint-flake8, python-filter] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| MODIN_ENGINE: "python" | |
| MODIN_EXPERIMENTAL: "True" | |
| name: test experimental | |
| services: | |
| moto: | |
| image: motoserver/moto | |
| ports: | |
| - 5000:5000 | |
| env: | |
| AWS_ACCESS_KEY_ID: foobar_key | |
| AWS_SECRET_ACCESS_KEY: foobar_secret | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: environment-dev.yml | |
| python-version: ${{ needs.python-filter.outputs.python-version }} | |
| - name: Install HDF5 | |
| run: sudo apt update && sudo apt install -y libhdf5-dev | |
| - run: python -m pytest -n 2 modin/tests/pandas/dataframe/test_map_metadata.py | |
| - run: python -m pytest -n 2 modin/tests/pandas/test_series.py | |
| # Do not add parallelism (`-n` argument) here - it will cause mock S3 service to fail. | |
| - run: python -m pytest modin/tests/pandas/test_io.py --verbose | |
| - uses: ./.github/actions/upload-coverage | |
| test-spreadsheet: | |
| needs: [lint-flake8, python-filter] | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: [ "${{ needs.python-filter.outputs.python-version }}" ] | |
| engine: ["ray", "dask"] | |
| env: | |
| MODIN_EXPERIMENTAL: "True" | |
| MODIN_ENGINE: ${{matrix.engine}} | |
| name: test-spreadsheet (engine ${{matrix.engine}}, python ${{matrix.python-version}}) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: environment-dev.yml | |
| python-version: ${{matrix.python-version}} | |
| - run: python -m pytest modin/tests/experimental/spreadsheet/test_general.py | |
| merge-coverage-artifacts: | |
| needs: [test-internals, test-api-and-no-engine, test-defaults, test-all-unidist, test-all, test-experimental, test-sanity] | |
| if: always() # we need to run it regardless of some job being skipped, like in PR | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Merge Artifacts | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: coverage-data | |
| pattern: coverage-data-* | |
| delete-merged: true | |
| upload-coverage: | |
| needs: [merge-coverage-artifacts, python-filter] | |
| if: always() # we need to run it regardless of some job being skipped, like in PR | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/python-only | |
| with: | |
| python-version: ${{ needs.python-filter.outputs.python-version }} | |
| - name: Download coverage data | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: coverage-data | |
| - run: pip install coverage | |
| - name: Combine coverage | |
| run: python -m coverage combine | |
| - name: Generate coverage report in xml format | |
| run: python -m coverage xml | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: ${{ github.event_name == 'push' }} # do not care about uploads in PR | |
| token: ${{ secrets.CODECOV_TOKEN }} # this token is available at https://app.codecov.io/account/github/modin-project/ |