From 6714196838dd159226c6ea74f91aeba2135bd0ca Mon Sep 17 00:00:00 2001 From: helenamachado Date: Thu, 31 Aug 2023 16:32:52 -0700 Subject: [PATCH] adding terms and importing oba term issue #151 imported: nasal bone length (oba) added: nasal bone length to nasion nasal bone length to frontonasal suture --- .DS_Store | Bin 8196 -> 8196 bytes src/ontology/fovt-edit.owl | 35 ++++ src/ontology/imports/bco_import.owl | 4 +- src/ontology/imports/bfo_import.owl | 4 +- src/ontology/imports/bspo_import.owl | 4 +- src/ontology/imports/iao_import.owl | 4 +- src/ontology/imports/ncbitaxon_import.owl | 4 +- src/ontology/imports/oba_import.owl | 216 +++++++++++++++++++++- src/ontology/imports/oba_terms.txt | 3 +- src/ontology/imports/pato_import.owl | 4 +- src/ontology/imports/ro_import.owl | 4 +- src/ontology/imports/uberon_import.owl | 4 +- 12 files changed, 260 insertions(+), 26 deletions(-) diff --git a/.DS_Store b/.DS_Store index 8f13d5afb3e6cdd929fd6d7c37d4cf0fb19449f2..a18934148a2dc766877adaae1af055e59f46cff0 100644 GIT binary patch delta 132 zcmZp1XmOa}aFU^hRb>Si7RcQy_~BO@IJBO`;!(PB4LSs6+gQW=UEav6#}bMlju fa`KZH7#IW?7#O>OnD0LrOiWzAnO(w%JgsX0$`mN@ delta 56 ycmZp1XmOa}C7U^hRb%4Qw`cQy`FBLf`;BU97K(PB3yrd-*~F5!bNco6{6C=n6> diff --git a/src/ontology/fovt-edit.owl b/src/ontology/fovt-edit.owl index 4506652..91ea17c 100644 --- a/src/ontology/fovt-edit.owl +++ b/src/ontology/fovt-edit.owl @@ -1138,6 +1138,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -13218,6 +13220,39 @@ AnnotationAssertion(Annotation( "facial skeleton lateral length to entorbitale"@en) SubClassOf( ) +# Class: (nasal bone length to nasion) + +AnnotationAssertion( ) +AnnotationAssertion(Annotation( "ISBN: 9780873659505") "The length of a nasal bone from a rhinion to a nasion."@en) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(dcterms:contributor "https://orcid.org/0000-0001-8415-4848") +AnnotationAssertion(Annotation( "ISBN: 9780873659505") "greatest length of the nasals"@en) +AnnotationAssertion(Annotation( "ISBN: 9780873659505") rdfs:comment "The following is the measurement number and genus for this trait in von den Driesch (1979): 12 Bos, 15 Ovis and Capra, 15 Cervus, 15 Sus, 10 Canis and Ursus, 5 Lepus and Oryctolagus."@en) +AnnotationAssertion(rdfs:label "nasal bone length to nasion"@en) +SubClassOf( ) +SubClassOf( ) + +# Class: (nasal bone length to frontonasal suture) + +AnnotationAssertion( ) +AnnotationAssertion(Annotation( "ISBN: 9780873659505") "The length of a nasal bone from a rhinion to a posteriormost part of a frontonasal suture."@en) +AnnotationAssertion( ) +AnnotationAssertion(dcterms:contributor "https://orcid.org/0000-0001-8415-4848") +AnnotationAssertion(Annotation( "ISBN: 9780873659505") "greatest length of the nasals"@en) +AnnotationAssertion(Annotation( "ISBN: 9780873659505") rdfs:comment "The following is the measurement number and genus for this trait in von den Driesch (1979): 16 Equus"@en) +AnnotationAssertion(Annotation( "ISBN: 9780873659505") rdfs:comment "This measurement is taken from the rhinion to the median point of intersection of the posteriormost part of the frontonasal suture."@en) +AnnotationAssertion(rdfs:label "nasal bone length to frontonasal suture"@en) +SubClassOf( ) +SubClassOf( ) + # Class: (pelvic girdle bone/zone size) SubClassOf( ) diff --git a/src/ontology/imports/bco_import.owl b/src/ontology/imports/bco_import.owl index 916c296..f27cf3a 100644 --- a/src/ontology/imports/bco_import.owl +++ b/src/ontology/imports/bco_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2023-08-18"^^xsd:string) +Annotation(owl:versionInfo "2023-08-31"^^xsd:string) Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/bfo_import.owl b/src/ontology/imports/bfo_import.owl index 82e407c..a1717e2 100644 --- a/src/ontology/imports/bfo_import.owl +++ b/src/ontology/imports/bfo_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2023-08-18"^^xsd:string) +Annotation(owl:versionInfo "2023-08-31"^^xsd:string) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) diff --git a/src/ontology/imports/bspo_import.owl b/src/ontology/imports/bspo_import.owl index a51ee8e..d537136 100644 --- a/src/ontology/imports/bspo_import.owl +++ b/src/ontology/imports/bspo_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2023-08-18"^^xsd:string) +Annotation(owl:versionInfo "2023-08-31"^^xsd:string) Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/iao_import.owl b/src/ontology/imports/iao_import.owl index 41c62f0..35f464d 100644 --- a/src/ontology/imports/iao_import.owl +++ b/src/ontology/imports/iao_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2023-08-18"^^xsd:string) +Annotation(owl:versionInfo "2023-08-31"^^xsd:string) Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/ncbitaxon_import.owl b/src/ontology/imports/ncbitaxon_import.owl index 17442df..eb073d9 100644 --- a/src/ontology/imports/ncbitaxon_import.owl +++ b/src/ontology/imports/ncbitaxon_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2023-08-18"^^xsd:string) +Annotation(owl:versionInfo "2023-08-31"^^xsd:string) Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/oba_import.owl b/src/ontology/imports/oba_import.owl index 192f602..987c56b 100644 --- a/src/ontology/imports/oba_import.owl +++ b/src/ontology/imports/oba_import.owl @@ -11,7 +11,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -261,6 +261,39 @@ + + + + + + + + + + + + + + + The size of a nasal bone. + size of nasal bone + nasal bone size + + + + + The size of a nasal bone. + AUTO:patterns/patterns/entity_attribute + + + + + size of nasal bone + AUTO:patterns/patterns/entity_attribute + + + + @@ -789,6 +822,39 @@ + + + + + + + + + + + + + + + The length of a nasal bone. + length of nasal bone + nasal bone length + + + + + The length of a nasal bone. + AUTO:patterns/patterns/entity_attribute + + + + + length of nasal bone + AUTO:patterns/patterns/entity_attribute + + + + @@ -5677,14 +5743,14 @@ - - The quality of a proximal phalanx of manual digit 4. + + quality of proximal phalanx of manual digit 4 obo:oba/patterns/entity_attribute_part_of - - quality of proximal phalanx of manual digit 4 + + The quality of a proximal phalanx of manual digit 4. obo:oba/patterns/entity_attribute_part_of @@ -5743,14 +5809,14 @@ - - quality of distal phalanx of manual digit 3 + + The quality of a distal phalanx of manual digit 3. obo:oba/patterns/entity_attribute_part_of - - The quality of a distal phalanx of manual digit 3. + + quality of distal phalanx of manual digit 3 obo:oba/patterns/entity_attribute_part_of @@ -6914,6 +6980,39 @@ + + + + + + + + + + + + + + + The quality of a nasal bone. + quality of nasal bone + nasal bone quality + + + + + The quality of a nasal bone. + obo:oba/patterns/entity_attribute_part_of + + + + + quality of nasal bone + obo:oba/patterns/entity_attribute_part_of + + + + @@ -7970,6 +8069,39 @@ + + + + + + + + + + + + + + + The morphology of a nasal bone. + morphology of nasal bone + nasal bone morphology trait + + + + + The morphology of a nasal bone. + obo:oba/patterns/entity_attribute_part_of + + + + + morphology of nasal bone + obo:oba/patterns/entity_attribute_part_of + + + + @@ -11261,6 +11393,12 @@ + + + + + + @@ -12625,6 +12763,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -15655,6 +15823,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/src/ontology/imports/oba_terms.txt b/src/ontology/imports/oba_terms.txt index bedf3b4..382ef9b 100644 --- a/src/ontology/imports/oba_terms.txt +++ b/src/ontology/imports/oba_terms.txt @@ -103,4 +103,5 @@ OBA:0003371 #middle phalanx of pedal digit 5 size OBA:0002556 #fused sacrum size OBA:VT0003047 #thoracic vertebra morphology trait OBA:0004048 #lumbar vertebra length -OBA:0002828 #lumbar vertebra 5 size \ No newline at end of file +OBA:0002828 #lumbar vertebra 5 size +OBA:0002399 #nasal bone length \ No newline at end of file diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl index 41ffbdf..8d2afb0 100644 --- a/src/ontology/imports/pato_import.owl +++ b/src/ontology/imports/pato_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2023-08-18"^^xsd:string) +Annotation(owl:versionInfo "2023-08-31"^^xsd:string) Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl index b0388fa..c93a639 100644 --- a/src/ontology/imports/ro_import.owl +++ b/src/ontology/imports/ro_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2023-08-18") +Annotation(owl:versionInfo "2023-08-31"^^xsd:string) Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/uberon_import.owl b/src/ontology/imports/uberon_import.owl index e17b164..80f5e45 100644 --- a/src/ontology/imports/uberon_import.owl +++ b/src/ontology/imports/uberon_import.owl @@ -7,7 +7,7 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) Annotation( ) Annotation( ) @@ -68,7 +68,7 @@ Annotation( "https://docs.google.com/doc Annotation( "https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit"^^xsd:anyURI) Annotation( "https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#"^^xsd:anyURI) Annotation( "https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0"^^xsd:anyURI) -Annotation(owl:versionInfo "2023-08-18"^^xsd:string) +Annotation(owl:versionInfo "2023-08-31"^^xsd:string) Declaration(Class()) Declaration(Class())