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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[project]
name = "genomespy"
dynamic = ["version"]
description = 'A python wrapper to the GPU-powered Javascript visualization grammar library GenomeSpy.'
readme = "README.md"
requires-python = ">=3.10"
license = "MIT"
keywords = []
authors = [
{ name = "fuxialexander", email = "fuxialexander@gmail.com" },
]
classifiers = [
"Development Status :: 4 - Beta",
"Programming Language :: Python",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: Implementation :: CPython",
"Programming Language :: Python :: Implementation :: PyPy",
]
dependencies = [
"numpy",
"pandas",
"ipython",
"scipy"
]
[project.urls]
Documentation = "https://github.com/fuxialexander/genomespy#readme"
Issues = "https://github.com/fuxialexander/genomespy/issues"
Source = "https://github.com/fuxialexander/genomespy"
[tool.hatch.version]
path = "src/genomespy/__about__.py"
[tool.hatch.envs.default]
dependencies = [
"pytest>=7.0.0",
"pytest-cov>=4.0.0",
"pytest-mock>=3.10.0",
"pytest-asyncio>=0.21.0",
"sphinx>=7.0.0",
"sphinx-rtd-theme>=1.3.0",
"myst-parser>=2.0.0",
"sphinx-autodoc-typehints>=1.25.0",
]
[tool.hatch.envs.default.scripts]
test = "pytest {args:tests}"
test-cov = "pytest --cov {args:tests}"
docs = "sphinx-build -b html docs/source docs/build/html"
[tool.hatch.envs.types]
extra-dependencies = [
"mypy>=1.0.0",
]
[tool.hatch.envs.types.scripts]
check = "mypy --install-types --non-interactive {args:src/genomespy tests}"
[tool.coverage.run]
source_pkgs = ["genomespy", "tests"]
branch = true
parallel = true
omit = [
"src/genomespy/__about__.py",
]
[tool.coverage.paths]
genomespy = ["src/genomespy", "*/genomespy/src/genomespy"]
tests = ["tests", "*/genomespy/tests"]
[tool.coverage.report]
exclude_lines = [
"no cov",
"if __name__ == .__main__.:",
"if TYPE_CHECKING:",
]
[tool.pytest.ini_options]
minversion = "7.0"
addopts = "-ra -q"
testpaths = [
"tests",
]
[tool.poetry]
include = ["src/genomespy/shared/*"]
[tool.setuptools.package-data]
genomespy = ["src/genomespy/shared/*"]
[tool.hatch.build.targets.wheel]
packages = ["src/genomespy"]
[tool.hatch.build.targets.sdist]
include = [
"src/genomespy/shared/*",
]
[tool.hatch.build]
artifacts = [
"src/genomespy/shared/*",
]