$ make clean thesis
$ make clean slides
If you are running it for the first time,
you may have to install various packages.
I used the trial and error method i.e. everytime
pdflatex got stuck, search for the .sty missing file and install it.
Extra packages that you would have to install:
MnSymbolbussproofssemanticframedmintedcmllbeamer
You would need to set up python, pip, pygmentize to use minted.
This was created using a template approved by KU graduate school downloaded from http://crmda.ku.edu/latex