Supported Filesystem Protocols

[david4096]

From @kellrott

We should have a discussion about syncing this concept with the one used in TES: https://github.com/ga4gh/task-execution-schemas/blob/master/task_execution.proto#L527

[jaeddy]

@susheel / @delagoya — the link above is dead. Can you point me to where the concept of supported filesystem protocols (or URI schemes) is specified in TES?

[delagoya]

It was originally pointing to the ServiceInfo result, but this was not well specified or documented. Here is the equivalent line from the JSON file, the storage attribute:
https://github.com/ga4gh/task-execution-schemas/blob/7bff83fd0120d6973f39508cc002d8e1690a0324/task_execution.swagger.json#L437

Here is a link above to the line but changed to adjust for the repo tag v.03:
https://github.com/ga4gh/task-execution-schemas/blob/d283bcb8d011c0603594daded1b28581520064f7/task_execution.proto#L527

[susheel]

@jaeddy The line below lists out the supported filesystem protocols in the new YAML spec.
https://github.com/ga4gh/task-execution-schemas/blob/d55bf880062442288afc95665aa0e21fbba77b20/openapi/task_execution.swagger.yaml#L407

[patmagee]

@jaeddy @david4096 this seems like something we have implemented already in the service info object, just wondering if I can close this

[jaeddy]

@patmagee it's implemented, but I don't know if it's necessarily synced with whatever approach TES has adopted per @kellrott's original comment. There's also the related issue of how to capture supported_filesystem_protocols when multiple environments and layers could be part of a WES service. It might be worth consolidating both threads into a new issue.