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acdpretty.html
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<HTML>
<HEAD>
<TITLE>
EMBOSS: acdpretty
</TITLE>
</HEAD>
<table align=center border=0 cellspacing=0 cellpadding=0>
<tr><td valign=top>
<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
</td>
<td align=left valign=middle>
<b><font size="+6">
acdpretty
</font></b>
</td></tr>
</table>
<br>
<p>
<H2>
Function
</H2>
ACD pretty printing utility
<H2>
Description
</H2>
Acdpretty does not have its own command line. Instead, it will pretty print
the ACD file of the program specified as the first parameter.
<p>
The program is not run.
<H2>
Usage
</H2>
<b>Here is a sample session with acdpretty</b>
<p>
<p>
<table width="90%"><tr><td bgcolor="#CCFFFF"><pre>
% <b>acdpretty qatest </b>
Created qatest.acdpretty
</pre></td></tr></table><p>
<p>
<a href="#output.1">Go to the output files for this example</a><p><p>
<H2>
Command line arguments
</H2>
The first parameter is the name of the program to pretty print.
<p>
All other command line parameters and qualifiers are essentially
ignored as processing stops once the ACD file is printed. A few of the
general qualifiers have the potential to conflict with the function of
acdpretty..
<P>
<H2>
Input file format
</H2>
The input file is the ACD file for the specified program
<p>
<H2>
Output file format
</H2>
<p>
The output file is a pretty printed copy of the original ACD file.
<p>
All sections and attributed will be indented. All values will be
quoted. Lines will be wrapped at a reasonable width.
<p>
The output file is intended as a standard format for parsers used by
GUI and other interface wrappers, rather than using the original ACD
file directly.
<a name="output.1"></a>
<h3>Output files for usage example </h3>
<p><h3>File: qatest.acdpretty</h3>
<table width="90%"><tr><td bgcolor="#CCFFCC">
<pre>
application: qatest [
groups: "test"
documentation: "ACD file for QA testing"
]
sequence: asequence [
parameter: "Y"
features: "Y"
]
sequence: bsequence [
parameter: "Y"
]
outfile: outfile [
parameter: "Y"
]
integer: aint [
prompt: "first integer"
]
integer: bint [
prompt: "second integer, first was $(aint)"
default: "57"
]
string: testalen [
standard: "Y"
information: "asequence length $(asequence.length)"
]
string: testblen [
standard: "Y"
information: "bsequence length $(bsequence.length)"
]
string: outdir [
information: "output directory"
]
boolean: logic [
information: "boolean value"
]
outfile: outtest [
parameter: "Y"
odirectory: "$(outdir)"
]
seqout: outseq [
parameter: "Y"
features: "Y"
osdirectory: "$(outdir)"
ofdirectory: "$(outdir)"
]
</pre>
</td></tr></table><p>
<H2>
Data files
</H2>
None
<H2>
Notes
</H2>
<H2>
References
</H2>
<H2>
Warnings
</H2>
None.
<H2>
Diagnostic Error Messages
</H2>
<H2>
Exit status
</H2>
It exits with status 0.
<H2>
Known bugs
</H2>
None.
<h2><a name="See also">See also</a></h2>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="acdc.html">acdc</a></td>
<td>ACD compiler</td>
</tr>
<tr>
<td><a href="acdtable.html">acdtable</a></td>
<td>Creates an HTML table from an ACD file</td>
</tr>
<tr>
<td><a href="acdtrace.html">acdtrace</a></td>
<td>ACD compiler on-screen trace</td>
</tr>
<tr>
<td><a href="acdvalid.html">acdvalid</a></td>
<td>ACD file validation</td>
</tr>
</table>
<H2>
Author(s)
</H2>
Peter Rice (pmr © ebi.ac.uk)
<br>
Informatics Division, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
<H2>
History
</H2>
Completed 9th March 1999
<H2>
Target users
</H2>
This program is intended to be used by developers of applications and
interfaces.
<H2>
Comments
</H2>
None
</BODY>
</HTML>