feat: update regulation workflow id and add transcriptomics (#144)

galaxyproject · Oct 26, 2024 · 814b352 · 814b352
1 parent 67729d6
commit 814b352
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Showing 3 changed files with 12 additions and 10 deletions.
diff --git a/app/apis/catalog/brc-analytics-catalog/common/constants.ts b/app/apis/catalog/brc-analytics-catalog/common/constants.ts
@@ -4,4 +4,5 @@ export const WORKFLOW_IDS_BY_ANALYSIS_METHOD: Partial<
   Record<ANALYSIS_METHOD, WORKFLOW_ID>
 > = {
   [ANALYSIS_METHOD.REGULATION]: WORKFLOW_ID.REGULATION,
+  [ANALYSIS_METHOD.TRANSCRIPTOMICS]: WORKFLOW_ID.TRANSCRIPTOMICS,
 };
diff --git a/app/apis/catalog/brc-analytics-catalog/common/entities.ts b/app/apis/catalog/brc-analytics-catalog/common/entities.ts
@@ -36,5 +36,6 @@ export interface EntitiesResponsePagination {
 }
 
 export enum WORKFLOW_ID {
-  REGULATION = "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/chipseq-pe/main/versions/v0.12",
+  REGULATION = "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/ChIPseq_PE/main",
+  TRANSCRIPTOMICS = "https://dockstore.org/api/ga4gh/trs/v2/tools/#workflow/github.com/iwc-workflows/rnaseq-pe/main",
 }
diff --git a/site-config/brc-analytics/local/entity/genome/analysisMethodMainColumn.ts b/site-config/brc-analytics/local/entity/genome/analysisMethodMainColumn.ts
@@ -21,6 +21,15 @@ export const mainColumn: ComponentsConfig = [
           variant: "banner",
         },
       },
+      {
+        component: C.AnalysisMethod,
+        viewBuilder: (r) =>
+          V.buildGenomeAnalysisMethod(r, {
+            analysisMethod: ANALYSIS_METHOD.TRANSCRIPTOMICS,
+            text: MDX.Transcriptomics({}),
+            title: "Transcriptomics",
+          }),
+      },
       {
         component: C.AnalysisMethod,
         viewBuilder: (r) =>
@@ -54,15 +63,6 @@ export const mainColumn: ComponentsConfig = [
             title: "Variant calling",
           }),
       },
-      {
-        component: C.AnalysisMethod,
-        viewBuilder: (r) =>
-          V.buildGenomeAnalysisMethod(r, {
-            analysisMethod: ANALYSIS_METHOD.TRANSCRIPTOMICS,
-            text: MDX.Transcriptomics({}),
-            title: "Transcriptomics",
-          }),
-      },
       {
         component: C.AnalysisMethod,
         viewBuilder: (r) =>