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Refresh organisms list for Sept 20 for 702 Organisms #89

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NoopDog opened this issue Sep 20, 2024 · 2 comments
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Refresh organisms list for Sept 20 for 702 Organisms #89

NoopDog opened this issue Sep 20, 2024 · 2 comments
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NoopDog commented Sep 20, 2024 •
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An HTML list is here...
https://hgdownload.soe.ucsc.edu/hubs/BRC/index.html

It references a JSON List on the page.
https://hgdownload.soe.ucsc.edu/hubs/BRC/assemblyList.json
@NoopDog NoopDog changed the title Refresh organisms list for Sept 20 Refresh organisms list for Sept 20 for 702 Organisms Sep 20, 2024
hunterckx added a commit that referenced this issue Sep 22, 2024
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chore: update organisms list for 2024-09-20 (#89)
ed64933
hunterckx added a commit that referenced this issue Sep 22, 2024
@hunterckx
feat: report unmatched assembly ids when building tsv (#89)
85efa7b
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asmId values of the 10 unmatched assemblies:

GCA_003675905.2_ASM367590v2
GCA_019968985.2_MNHN_PgigB_v1.1
GCF_000001405.40_GRCh38.p14
GCF_000181695.2_ASM18169v2
GCA_023705535.2_Bovis.genome.20180530v2
GCA_003072535.4_EMAI_ToriGNu_1
GCA_001444175.2_A.albopictus_v1.1
GCA_900258525.3_C_sonorensis_v2_redundans
GCF_000001635.27_GRCm39
GCA_003072545.4_EMAI_ToriFCr_1

@hunterckx hunterckx mentioned this issue Sep 22, 2024
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NoopDog added a commit that referenced this issue Sep 23, 2024
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Merge pull request #90 from galaxyproject/hunter/89-update-organism-list
e33d5db 
chore: update organisms list for 2024-09-20 (#89)
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NoopDog commented Sep 25, 2024

Complete

@NoopDog NoopDog closed this as completed Sep 25, 2024
@github-actions github-actions bot mentioned this issue Nov 13, 2024
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