From 4bc650d3a11d5a438c89d3a7778d38c49285d12a Mon Sep 17 00:00:00 2001 From: Seth Carbon Date: Thu, 13 Oct 2022 08:52:38 -0700 Subject: [PATCH] update metadata for #304 --- metadata/datasets/dictybase.yaml | 6 +- metadata/datasets/goa.yaml | 154 +++++++++++++++--------------- metadata/datasets/rnacentral.yaml | 2 +- metadata/datasets/sgd.yaml | 2 +- 4 files changed, 82 insertions(+), 82 deletions(-) diff --git a/metadata/datasets/dictybase.yaml b/metadata/datasets/dictybase.yaml index d4fe7b62..fa476123 100644 --- a/metadata/datasets/dictybase.yaml +++ b/metadata/datasets/dictybase.yaml @@ -16,7 +16,7 @@ datasets: dataset: dictybase submitter: dictyBase compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/contrib/goa/dictyBase.gpa.gz + source: https://ftp.ebi.ac.uk/pub/contrib/goa/dictyBase.gpa.gz entity_type: status: active species_code: Ddis @@ -34,7 +34,7 @@ datasets: dataset: dictybase submitter: dictyBase compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/contrib/goa/dictyBase.gpi.gz + source: https://ftp.ebi.ac.uk/pub/contrib/goa/dictyBase.gpi.gz entity_type: status: active species_code: Ddis @@ -52,7 +52,7 @@ datasets: dataset: dictybase submitter: dictyBase compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/contrib/goa/dictyBase.gaf.gz + source: https://ftp.ebi.ac.uk/pub/contrib/goa/dictyBase.gaf.gz entity_type: status: active species_code: Ddis diff --git a/metadata/datasets/goa.yaml b/metadata/datasets/goa.yaml index e0394afc..3648e9c7 100644 --- a/metadata/datasets/goa.yaml +++ b/metadata/datasets/goa.yaml @@ -16,7 +16,7 @@ datasets: dataset: goa_chicken submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken.gpa.gz entity_type: protein status: active species_code: Ggal @@ -36,7 +36,7 @@ datasets: dataset: goa_chicken submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken.gpi.gz entity_type: protein status: active species_code: Ggal @@ -56,7 +56,7 @@ datasets: dataset: goa_chicken_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_complex.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_complex.gpa.gz entity_type: complex status: active species_code: Ggal @@ -76,7 +76,7 @@ datasets: dataset: goa_chicken_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_complex.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_complex.gpi.gz entity_type: complex status: active species_code: Ggal @@ -96,7 +96,7 @@ datasets: dataset: goa_chicken_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_isoform.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_isoform.gpa.gz entity_type: isoform status: active species_code: Ggal @@ -116,7 +116,7 @@ datasets: dataset: goa_chicken_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_isoform.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_isoform.gpi.gz entity_type: isoform status: active species_code: Ggal @@ -136,7 +136,7 @@ datasets: dataset: goa_chicken_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_rna.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_rna.gpa.gz entity_type: rna status: active species_code: Ggal @@ -156,7 +156,7 @@ datasets: dataset: goa_chicken_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_rna.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_rna.gpi.gz entity_type: rna status: active species_code: Ggal @@ -176,7 +176,7 @@ datasets: dataset: goa_cow submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow.gpa.gz entity_type: protein status: active species_code: Btau @@ -194,7 +194,7 @@ datasets: dataset: goa_cow submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow.gpi.gz entity_type: protein status: active species_code: Btau @@ -212,7 +212,7 @@ datasets: dataset: goa_cow_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_complex.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_complex.gpa.gz entity_type: complex status: active species_code: Btau @@ -230,7 +230,7 @@ datasets: dataset: goa_cow_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_complex.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_complex.gpi.gz entity_type: complex status: active species_code: Btau @@ -248,7 +248,7 @@ datasets: dataset: goa_cow_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_isoform.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_isoform.gpa.gz entity_type: isoform status: active species_code: Btau @@ -266,7 +266,7 @@ datasets: dataset: goa_cow_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_isoform.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_isoform.gpi.gz entity_type: isoform status: active species_code: Btau @@ -284,7 +284,7 @@ datasets: dataset: goa_cow_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_rna.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_rna.gpa.gz entity_type: rna status: active species_code: Btau @@ -302,7 +302,7 @@ datasets: dataset: goa_cow_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_rna.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_rna.gpi.gz entity_type: rna status: active species_code: Btau @@ -320,7 +320,7 @@ datasets: dataset: goa_dog submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog.gpa.gz entity_type: protein status: active species_code: Cfam @@ -336,7 +336,7 @@ datasets: dataset: goa_dog submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog.gpi.gz entity_type: protein status: active species_code: Cfam @@ -352,7 +352,7 @@ datasets: dataset: goa_dog_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_complex.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_complex.gpa.gz entity_type: complex status: active species_code: Cfam @@ -368,7 +368,7 @@ datasets: dataset: goa_dog_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_complex.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_complex.gpi.gz entity_type: complex status: active species_code: Cfam @@ -384,7 +384,7 @@ datasets: dataset: goa_dog_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_isoform.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_isoform.gpa.gz entity_type: isoform status: active species_code: Cfam @@ -400,7 +400,7 @@ datasets: dataset: goa_dog_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_isoform.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_isoform.gpi.gz entity_type: isoform status: active species_code: Cfam @@ -416,7 +416,7 @@ datasets: dataset: goa_dog_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_rna.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_rna.gpa.gz entity_type: rna status: active species_code: Cfam @@ -432,7 +432,7 @@ datasets: dataset: goa_dog_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_rna.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_rna.gpi.gz entity_type: rna status: active species_code: Cfam @@ -448,7 +448,7 @@ datasets: dataset: goa_human submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human.gpa.gz entity_type: protein status: active species_code: Hsap @@ -464,7 +464,7 @@ datasets: dataset: goa_human submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human.gpi.gz entity_type: protein status: active species_code: Hsap @@ -480,7 +480,7 @@ datasets: dataset: goa_human_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_complex.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_complex.gpa.gz entity_type: complex status: active species_code: Hsap @@ -496,7 +496,7 @@ datasets: dataset: goa_human_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_complex.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_complex.gpi.gz entity_type: complex status: active species_code: Hsap @@ -512,7 +512,7 @@ datasets: dataset: goa_human_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_isoform.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_isoform.gpa.gz entity_type: isoform status: active species_code: Hsap @@ -528,7 +528,7 @@ datasets: dataset: goa_human_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_isoform.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_isoform.gpi.gz entity_type: isoform status: active species_code: Hsap @@ -544,7 +544,7 @@ datasets: dataset: goa_human_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gpa.gz entity_type: rna status: active species_code: Hsap @@ -560,7 +560,7 @@ datasets: dataset: goa_human_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gpi.gz entity_type: rna status: active species_code: Hsap @@ -576,7 +576,7 @@ datasets: dataset: goa_pig submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig.gpa.gz entity_type: protein status: active species_code: Sscr @@ -592,7 +592,7 @@ datasets: dataset: goa_pig submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig.gpi.gz entity_type: protein status: active species_code: Sscr @@ -608,7 +608,7 @@ datasets: dataset: goa_pig_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_complex.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_complex.gpa.gz entity_type: complex status: active species_code: Sscr @@ -624,7 +624,7 @@ datasets: dataset: goa_pig_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_complex.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_complex.gpi.gz entity_type: complex status: active species_code: Sscr @@ -640,7 +640,7 @@ datasets: dataset: goa_pig_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_isoform.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_isoform.gpa.gz entity_type: isoform status: active species_code: Sscr @@ -656,7 +656,7 @@ datasets: dataset: goa_pig_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_isoform.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_isoform.gpi.gz entity_type: isoform status: active species_code: Sscr @@ -672,7 +672,7 @@ datasets: dataset: goa_pig_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_rna.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_rna.gpa.gz entity_type: rna status: active species_code: Sscr @@ -688,7 +688,7 @@ datasets: dataset: goa_pig_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_rna.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_rna.gpi.gz entity_type: rna status: active species_code: Sscr @@ -704,7 +704,7 @@ datasets: dataset: goa_chicken submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken.gaf.gz entity_type: protein status: active species_code: Ggal @@ -724,7 +724,7 @@ datasets: dataset: goa_chicken_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_complex.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_complex.gaf.gz entity_type: complex status: active species_code: Ggal @@ -744,7 +744,7 @@ datasets: dataset: goa_chicken_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_isoform.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_isoform.gaf.gz entity_type: isoform status: active species_code: Ggal @@ -764,7 +764,7 @@ datasets: dataset: goa_chicken_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_rna.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/CHICKEN/goa_chicken_rna.gaf.gz entity_type: rna status: active species_code: Ggal @@ -784,7 +784,7 @@ datasets: dataset: goa_cow submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow.gaf.gz entity_type: protein status: active species_code: Btau @@ -802,7 +802,7 @@ datasets: dataset: goa_cow_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_complex.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_complex.gaf.gz entity_type: complex status: active species_code: Btau @@ -820,7 +820,7 @@ datasets: dataset: goa_cow_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_isoform.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_isoform.gaf.gz entity_type: isoform status: active species_code: Btau @@ -838,7 +838,7 @@ datasets: dataset: goa_cow_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_rna.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/COW/goa_cow_rna.gaf.gz entity_type: rna status: active species_code: Btau @@ -856,7 +856,7 @@ datasets: dataset: goa_dog submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog.gaf.gz entity_type: protein status: active species_code: Cfam @@ -872,7 +872,7 @@ datasets: dataset: goa_dog_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_complex.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_complex.gaf.gz entity_type: complex status: active species_code: Cfam @@ -888,7 +888,7 @@ datasets: dataset: goa_dog_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_isoform.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_isoform.gaf.gz entity_type: isoform status: active species_code: Cfam @@ -904,7 +904,7 @@ datasets: dataset: goa_dog_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_rna.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/DOG/goa_dog_rna.gaf.gz entity_type: rna status: active species_code: Cfam @@ -920,7 +920,7 @@ datasets: dataset: goa_human submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human.gaf.gz entity_type: protein status: active species_code: Hsap @@ -952,7 +952,7 @@ datasets: dataset: goa_human_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_isoform.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_isoform.gaf.gz entity_type: isoform status: active species_code: Hsap @@ -968,7 +968,7 @@ datasets: dataset: goa_human_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/goa_human_rna.gaf.gz entity_type: rna status: active species_code: Hsap @@ -984,7 +984,7 @@ datasets: dataset: goa_pdb submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PDB/goa_pdb.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PDB/goa_pdb.gaf.gz entity_type: protein status: active species_code: @@ -1000,7 +1000,7 @@ datasets: dataset: goa_pig submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig.gaf.gz entity_type: protein status: active species_code: Sscr @@ -1016,7 +1016,7 @@ datasets: dataset: goa_pig_complex submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_complex.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_complex.gaf.gz entity_type: complex status: active species_code: Sscr @@ -1032,7 +1032,7 @@ datasets: dataset: goa_pig_isoform submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_isoform.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_isoform.gaf.gz entity_type: isoform status: active species_code: Sscr @@ -1048,7 +1048,7 @@ datasets: dataset: goa_pig_rna submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_rna.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/PIG/goa_pig_rna.gaf.gz entity_type: rna status: active species_code: Sscr @@ -1064,7 +1064,7 @@ datasets: dataset: goa_uniprot_all submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz entity_type: all status: active aggregates: goa @@ -1080,7 +1080,7 @@ datasets: dataset: goa_uniprot_all submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gpi.gz entity_type: all status: active aggregates: goa @@ -1096,7 +1096,7 @@ datasets: dataset: goa_uniprot_all submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gpa.gz entity_type: all status: active aggregates: goa @@ -1112,7 +1112,7 @@ datasets: dataset: goa_uniprot_gcrp submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_gcrp.gaf.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_gcrp.gaf.gz entity_type: all status: active aggregates: goa @@ -1129,7 +1129,7 @@ datasets: dataset: goa_uniprot_gcrp submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_gcrp.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_gcrp.gpi.gz entity_type: all status: active aggregates: goa @@ -1146,7 +1146,7 @@ datasets: dataset: goa_uniprot_gcrp submitter: goa compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_gcrp.gpa.gz + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_gcrp.gpa.gz entity_type: all status: active aggregates: goa @@ -1162,7 +1162,7 @@ datasets: type: external2go dataset: interpro2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/interpro2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/interpro2go status: active - @@ -1173,7 +1173,7 @@ datasets: type: external2go dataset: pfam2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/pfam2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/pfam2go status: active - @@ -1184,7 +1184,7 @@ datasets: type: external2go dataset: pirsf2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/pirsf2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/pirsf2go status: active - @@ -1195,7 +1195,7 @@ datasets: type: external2go dataset: prints2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/prints2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/prints2go status: active - @@ -1206,7 +1206,7 @@ datasets: type: external2go dataset: prodom2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/prodom2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/prodom2go status: active - @@ -1217,7 +1217,7 @@ datasets: type: external2go dataset: prosite2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/prosite2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/prosite2go status: active - @@ -1228,7 +1228,7 @@ datasets: type: external2go dataset: smart2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/smart2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/smart2go status: active - @@ -1239,7 +1239,7 @@ datasets: type: external2go dataset: uniprotkb_kw2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/uniprotkb_kw2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/uniprotkb_kw2go status: active - @@ -1250,7 +1250,7 @@ datasets: type: external2go dataset: uniprotkb_sl2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/uniprotkb_sl2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/uniprotkb_sl2go status: active - @@ -1261,7 +1261,7 @@ datasets: type: external2go dataset: unirule2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/unirule2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/unirule2go status: active - @@ -1272,5 +1272,5 @@ datasets: type: external2go dataset: hamap2go submitter: goa - source: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/hamap2go + source: https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/hamap2go status: active diff --git a/metadata/datasets/rnacentral.yaml b/metadata/datasets/rnacentral.yaml index 7adb1abd..e78eb0b7 100644 --- a/metadata/datasets/rnacentral.yaml +++ b/metadata/datasets/rnacentral.yaml @@ -10,7 +10,7 @@ datasets: dataset: rnacentral submitter: rnacentral compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/databases/RNAcentral/current_release/gpi/rnacentral.gpi.gz + source: https://ftp.ebi.ac.uk/pub/databases/RNAcentral/current_release/gpi/rnacentral.gpi.gz entity_type: rna status: active taxa: diff --git a/metadata/datasets/sgd.yaml b/metadata/datasets/sgd.yaml index e1938b25..f077dc24 100644 --- a/metadata/datasets/sgd.yaml +++ b/metadata/datasets/sgd.yaml @@ -35,7 +35,7 @@ datasets: dataset: sgd submitter: sgd compression: gzip - source: ftp://ftp.ebi.ac.uk/pub/contrib/goa/gp_association.559292_sgd.gz + source: https://ftp.ebi.ac.uk/pub/contrib/goa/gp_association.559292_sgd.gz entity_type: status: active species_code: Scer