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Problems running vignette code #107

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ericnovik opened this issue May 17, 2022 · 0 comments
Open

Problems running vignette code #107

ericnovik opened this issue May 17, 2022 · 0 comments
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@ericnovik
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> library(tidyverse)
── Attaching packages ────────────────────────────────────────── tidyverse 1.3.1 ──
✔ ggplot2 3.3.6     ✔ purrr   0.3.4
✔ tibble  3.1.7     ✔ dplyr   1.0.9
✔ tidyr   1.2.0     ✔ stringr 1.4.0
✔ readr   2.1.2     ✔ forcats 0.5.1
── Conflicts ───────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()
> # ---- Authenticate through geco ----
> # Our login info is stored in two environment variables:
> # - `GECO_API_USER`: your email
> # - `GECO_API_PASSWORD`: your password
> rgeco::login()
> demo_project <- Sys.getenv('GECO_API_TEST_PROJECT')
> demo_project
[1] "nc318"
> subjects <- fetch_subjects(project = demo_project, event_type = 'overall_survival')
INFO [2022-05-16 18:41:41] Project version id set to 342cf4ba-fe86-45d9-98b0-e1e2d5ba414d
INFO [2022-05-16 18:41:41] Data were last updated 2020-11-05: Data provided Nov 2020 with pk, pd, demographic, cytokine, and chemistry data.
Error in `.data$event_type`:
! Column `event_type` not found in `.data`.
Run `rlang::last_error()` to see where the error occurred.

NC318 does not have survival data which is fine, but the vignette should not fail?

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