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mapping issues from genomic to pdb #56

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jjgao opened this issue Aug 21, 2019 · 0 comments
Open

mapping issues from genomic to pdb #56

jjgao opened this issue Aug 21, 2019 · 0 comments
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@jjgao
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jjgao commented Aug 21, 2019

reported by user:

a strange case where a genomic position maps onto several different residues on the same protein chain. Here is an example:
https://g2s.genomenexus.org/api/alignments/hgvs-grch37/chr12:g.104713303C%3ET/pdb/3QFB_A/residueMapping

After getting the genome nexus data, I suspect that the gene_id was used for retrieving alignments. If so, transcript_id or trotein_id should be used instead.

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