Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

JAMg complains cannot find the transposons database file when running repeatmasker #2

Open
yjx1217 opened this issue Jun 16, 2015 · 0 comments
Open

JAMg complains cannot find the transposons database file when running repeatmasker #2

yjx1217 opened this issue Jun 16, 2015 · 0 comments

Comments

@yjx1217
Copy link

yjx1217 commented Jun 16, 2015

This error happened due to the default transposons database path specified ($transposon_db = $ENV{'HOME'} . "/src/jamg/databases/hhblits/transposons") in the "prepare_domain_exon_annotation.pl" script doesn't match well with the database path established with current JAMg installation. I worked around by specifiy "-transposon_db $JAMG_PATH/databases/hhblits/transposons " to override the default value when running the "prepare_domain_exon_annotation.pl" script.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@yjx1217