Installation fails for old R (2.14.1)

[lejlot]

R

R version 2.14.1 (2011-12-22)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

install.packages("gmum.r")
Installing package(s) into ‘/home/lejlot/R/x86_64-pc-linux-gnu-library/2.14’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
Warning: dependencies ‘SparseM’, ‘httr’, ‘Rcpp’, ‘plyr’, ‘NMF’, ‘irlba’ are not available
also installing the dependencies ‘reshape2’, ‘scales’, ‘magrittr’, ‘ggplot2’, ‘igraph’, ‘RcppArmadillo’, ‘BH’

trying URL 'http://cran.univ-lyon1.fr/src/contrib/reshape2_1.4.1.tar.gz'
Content type 'application/x-gzip' length 34693 bytes (33 Kb)

opened URL

downloaded 33 Kb

trying URL 'http://cran.univ-lyon1.fr/src/contrib/scales_0.3.0.tar.gz'
Content type 'application/x-gzip' length 57030 bytes (55 Kb)

opened URL

downloaded 55 Kb

trying URL 'http://cran.univ-lyon1.fr/src/contrib/magrittr_1.5.tar.gz'
Content type 'application/x-gzip' length 200504 bytes (195 Kb)

opened URL

downloaded 195 Kb

trying URL 'http://cran.univ-lyon1.fr/src/contrib/ggplot2_1.0.1.tar.gz'
Content type 'application/x-gzip' length 2351203 bytes (2.2 Mb)

opened URL

downloaded 2.2 Mb

trying URL 'http://cran.univ-lyon1.fr/src/contrib/igraph_1.0.1.tar.gz'
Content type 'application/x-gzip' length 3328353 bytes (3.2 Mb)

opened URL

downloaded 3.2 Mb

trying URL 'http://cran.univ-lyon1.fr/src/contrib/RcppArmadillo_0.6.100.0.0.tar.gz'
Content type 'application/x-gzip' length 981341 bytes (958 Kb)

opened URL

downloaded 958 Kb

trying URL 'http://cran.univ-lyon1.fr/src/contrib/BH_1.58.0-1.tar.gz'
Content type 'application/x-gzip' length 8727864 bytes (8.3 Mb)

opened URL

downloaded 8.3 Mb

trying URL 'http://cran.univ-lyon1.fr/src/contrib/gmum.r_0.2.1.tar.gz'
Content type 'application/x-gzip' length 567611 bytes (554 Kb)

opened URL

downloaded 554 Kb

ERROR: dependencies ‘plyr’, ‘Rcpp’ are not available for package ‘reshape2’

• removing ‘/home/lejlot/R/x86_64-pc-linux-gnu-library/2.14/reshape2’
  ERROR: dependencies ‘plyr’, ‘Rcpp’ are not available for package ‘scales’
• removing ‘/home/lejlot/R/x86_64-pc-linux-gnu-library/2.14/scales’
• installing source package ‘magrittr’ ...
  ** package ‘magrittr’ successfully unpacked and MD5 sums checked
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  ** help
  *** installing help indices
  ** building package indices ...
  ** testing if installed package can be loaded
• DONE (magrittr)
  ERROR: dependency ‘Rcpp’ is not available for package ‘RcppArmadillo’
• removing ‘/home/lejlot/R/x86_64-pc-linux-gnu-library/2.14/RcppArmadillo’
• installing source package ‘BH’ ...
  ** package ‘BH’ successfully unpacked and MD5 sums checked
  ** inst
  ** help
  *** installing help indices
  ** building package indices ...
  ** testing if installed package can be loaded
• DONE (BH)
  ERROR: dependencies ‘plyr’, ‘reshape2’, ‘scales’ are not available for package ‘ggplot2’
• removing ‘/home/lejlot/R/x86_64-pc-linux-gnu-library/2.14/ggplot2’
  ERROR: dependencies ‘NMF’, ‘irlba’ are not available for package ‘igraph’
• removing ‘/home/lejlot/R/x86_64-pc-linux-gnu-library/2.14/igraph’
  ERROR: dependencies ‘ggplot2’, ‘igraph’, ‘SparseM’, ‘httr’, ‘Rcpp’ are not available for package ‘gmum.r’
• removing ‘/home/lejlot/R/x86_64-pc-linux-gnu-library/2.14/gmum.r’

The downloaded packages are in
‘/tmp/RtmpbLQc83/downloaded_packages’
Warning messages:
1: In install.packages("gmum.r") :
installation of package ‘reshape2’ had non-zero exit status
2: In install.packages("gmum.r") :
installation of package ‘scales’ had non-zero exit status
3: In install.packages("gmum.r") :
installation of package ‘RcppArmadillo’ had non-zero exit status
4: In install.packages("gmum.r") :
installation of package ‘ggplot2’ had non-zero exit status
5: In install.packages("gmum.r") :
installation of package ‘igraph’ had non-zero exit status
6: In install.packages("gmum.r") :
installation of package ‘gmum.r’ had non-zero exit status

[kudkudak]

Reason: unsatisfied dependencies, same problem for igraph and ggplot2

[kudkudak]

Solutions: just do what igraph and ggplot2 - fail, or add igrah and ggplot2 as suggested and appropriately check for that in code.