partially address #57

gpertea · Sep 19, 2020 · eb4ab46 · eb4ab46
1 parent 2f5b3d0
commit eb4ab46
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/gffread.cpp b/gffread.cpp
@@ -856,6 +856,8 @@ int main(int argc, char* argv[]) {
      if (f_out && (fmtGFF3 || fmtTable)) {
       while (gfs_i<gdata->gfs.Count()) {
          GffObj& gfst=*(gdata->gfs[gfs_i]);
+         if (TFilters && gfst.isGene() && gfst.children.Count()==0) // gene with no children left, skip it if filters were applied
+        	 { ++gfs_i; continue; }
          if T_PRINTABLE(gfst.udata) { //never printed
            T_NO_PRINT(gfst.udata);
            if (fmtGFF3) {