metadata.yaml

---
title: "Opportunities and obstacles for deep learning in biology and medicine [update in progress]"
keywords:
  - deep learning
  - review
  - precision medicine
  - genomics
  - machine learning
  - neural networks
  - collaborative
  - manubot
lang: en-US
authors:
  - github: jlevy44
    name: Joshua J. Levy
    orcid: 0000-0001-8050-1291
    email: joshua.j.levy.gr@dartmouth.edu
    affiliations:
      - Program in Quantitative Biomedical Sciences, Geisel School of Medicine at Dartmouth, Lebanon, NH
    funders: Burroughs Wellcome Fund Big Data in the Life Sciences training grant at Dartmouth
    v1: ""
    v2: "Drafted one or more subsections"
    coi:
      string: "None"
      lastapproved: !!str 2020-03-04
  - github: brockclarke
    name: Brock C. Christensen
    orcid: 0000-0003-3022-426X
    email: brock.christensen@dartmouth.edu
    affiliations:
      - Department of Epidemiology, Geisel School of Medicine, Dartmouth College, Lebanon, NH
    funders: NIH R01CA216265, Dartmouth College Neukom Institute for Computational Science CompX award
    v1: ""
    v2: "Drafted one or more subsections"
    coi:
      string: "None"
      lastapproved: !!str 2020-03-05
  - github: AlexanderTitus
    name: Alexander J. Titus
    orcid: 0000-0002-0145-9564
    email: alexander.j.titus@dartmouth.edu
    affiliations:
      - Department of Epidemiology, Geisel School of Medicine, Dartmouth College, Lebanon, NH
    funders: NIH T32LM012204
    v1: ""
    v2: "Drafted one or more subsections"
    coi:
      string: "None"
      lastapproved: !!str 2020-03-07
  - github: cgreene
    name: Casey S. Greene
    orcid: 0000-0001-8713-9213
    email: greenescientist@gmail.com
    affiliations:
      - Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
      - Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Philadelphia, PA
    funders: GBMF GBMF4552, NIH R01HG010067 & R01CA237170, ALSF CCDL
    symbol_str: "†"
    v1: "Drafted sub-sections, edited the manuscript, reviewed pull requests, and coordinated co-authors"
    v2: "Drafted sub-sections, edited the manuscript, reviewed pull requests, and coordinated co-authors"
    coi:
      string: "None"
      lastapproved: !!str 2020-03-10
  - github: dhimmel
    name: Daniel S. Himmelstein
    orcid: 0000-0002-3012-7446
    email: daniel.himmelstein@gmail.com
    affiliations:
      - Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
    funders: G-2018-11163 and GBMF4552
    v1: "Edited the manuscript, reviewed pull requests, and developed Manubot"
    v2: "Edited the manuscript, reviewed pull requests, and developed Manubot"
    coi:
      string: "None"
      lastapproved: !!str 2020-03-10
  - github: delton137
    name: Daniel C. Elton
    orcid: 0000-0003-0249-1387
    email: daniel.elton@nih.gov
    affiliations:
      - Radiology and Imaging Sciences, National Institutes of Health Clinical Center, Bethesda, MD
    v1: ""
    v2: "Revised specific sub-sections or supervised drafting one or more sub-sections"
    coi:
      string: "None"
      lastapproved: !!str 2020-03-05
  - github: agitter
    name: Anthony Gitter
    orcid: 0000-0002-5324-9833
    email: gitter@biostat.wisc.edu
    affiliations:
      - Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI
      - Morgridge Institute for Research, Madison, WI
    funders: John W. and Jeanne M. Rowe Center for Research in Virology
    symbol_str: "†"
    v1: "Drafted sub-sections, edited the manuscript, reviewed pull requests, and coordinated co-authors"
    v2: "Drafted sub-sections, edited the manuscript, reviewed pull requests, and coordinated co-authors"
    coi:
      string: "Filed a provisional patent application with the Wisconsin Alumni Research Foundation related to classifying activated T cells"
      lastapproved: !!str 2020-08-09