bioconda variables

Merge pull request #11 from grenaud/makevars

modified make

fixed minor bug

fixed minor bug in single-end

fixed release for bioconda

This is a minor release to set it for bioconda.

automatic detection of adapters using maximum-likelihood

We use reads that have an overlap of some portion of the read that is extremely unlikely to occur by chance and leverage those to infer the adapter sequences. A maximum-likelihood consensus is then called.

added UMI support

UMI support has been added. We do now a maximum-likelihood inference of the UMI if those were observed twice.

v.1.1.5

program faster due to precomputation