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minor updates to lecture 3 and trinity headings
make alignment free its own module and updated TOC, footer, etc.
fix tables for real this time
Revert "fix the navigation tables on wiki pages" This reverts commit 1c78d5acac208efcaf4c284160febd715b2ddcb0.
fix the navigation tables on wiki pages
fixed section numbering and updated author attribution
fixing navigation bars at bottom of pages
Updated Trinotate_functional_annotation (markdown)