NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(plot,ialist)
S3method(plot,pairia)
S3method(print,amova)
S3method(print,ialist)
S3method(print,locustable)
S3method(print,pairia)
S3method(print,popprtable)
export("%>%")
export("cutoff<-")
export("distalgo<-")
export("distargs<-")
export("distenv<-")
export("distname<-")
export("mlg.filter<-")
export("mll.custom<-")
export("mll.levels<-")
export("mll<-")
export("visible<-")
export(MLG2df)
export(aboot)
export(as.genambig)
export(as.genclone)
export(as.snpclone)
export(bitwise.dist)
export(bitwise.ia)
export(boot.ia)
export(bootgen2genind)
export(bruvo.between)
export(bruvo.boot)
export(bruvo.dist)
export(bruvo.msn)
export(clonecorrect)
export(cutoff)
export(cutoff_predictor)
export(diss.dist)
export(distalgo)
export(distargs)
export(distenv)
export(distname)
export(diversity_boot)
export(diversity_ci)
export(diversity_stats)
export(edwards.dist)
export(filter_stats)
export(fix_replen)
export(genclone2genind)
export(genind2genalex)
export(genotype_curve)
export(getfile)
export(greycurve)
export(ia)
export(imsn)
export(incomp)
export(info_table)
export(informloci)
export(is.clone)
export(is.genclone)
export(is.snpclone)
export(jack.ia)
export(locus_table)
export(make_haplotypes)
export(missingno)
export(mlg)
export(mlg.crosspop)
export(mlg.filter)
export(mlg.id)
export(mlg.table)
export(mlg.vector)
export(mll)
export(mll.custom)
export(mll.levels)
export(mll.reset)
export(nei.dist)
export(nmll)
export(old2new_genclone)
export(pair.ia)
export(pgen)
export(plot_filter_stats)
export(plot_poppr_msn)
export(poppr)
export(poppr.all)
export(poppr.amova)
export(poppr.msn)
export(poppr_has_parallel)
export(popsub)
export(prevosti.dist)
export(private_alleles)
export(provesti.dist)
export(psex)
export(read.genalex)
export(recode_polyploids)
export(resample.ia)
export(reynolds.dist)
export(rogers.dist)
export(rraf)
export(rrmlg)
export(samp.ia)
export(shufflepop)
export(test_replen)
export(upgma)
export(visible)
export(win.ia)
exportClasses(MLG)
exportClasses(bootgen)
exportClasses(bruvomat)
exportClasses(genclone)
exportClasses(snpclone)
exportMethods("levels<-")
exportMethods(as.genambig)
exportMethods(duplicated)
exportMethods(levels)
exportMethods(print)
exportMethods(unique)
import(adegenet)
import(ggplot2)
import(methods)
import(shiny)
import(vegan)
importFrom(ade4,amova)
importFrom(ade4,cailliez)
importFrom(ade4,is.euclid)
importFrom(ade4,lingoes)
importFrom(ade4,quasieuclid)
importFrom(ape,add.scale.bar)
importFrom(ape,as.phylo)
importFrom(ape,as.phylo.hclust)
importFrom(ape,axisPhylo)
importFrom(ape,boot.phylo)
importFrom(ape,is.ultrametric)
importFrom(ape,ladderize)
importFrom(ape,nj)
importFrom(ape,nodelabels)
importFrom(ape,plot.phylo)
importFrom(ape,tiplabels)
importFrom(boot,boot)
importFrom(boot,boot.ci)
importFrom(boot,norm.ci)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange_)
importFrom(dplyr,group_by_)
importFrom(dplyr,n)
importFrom(dplyr,progress_estimated)
importFrom(dplyr,ungroup)
importFrom(grDevices,as.raster)
importFrom(grDevices,gray)
importFrom(grDevices,grey)
importFrom(grDevices,topo.colors)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,frame)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rasterImage)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,add.edges)
importFrom(igraph,delete.edges)
importFrom(igraph,graph.adjacency)
importFrom(igraph,layout.auto)
importFrom(igraph,minimum.spanning.tree)
importFrom(igraph,plot.igraph)
importFrom(igraph,print.igraph)
importFrom(magrittr,"%>%")
importFrom(pegas,as.loci)
importFrom(pegas,loci2genind)
importFrom(polysat,Genotypes)
importFrom(polysat,Missing)
importFrom(polysat,Ploidies)
importFrom(polysat,PopInfo)
importFrom(polysat,PopNames)
importFrom(rlang,"!!")
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,dbinom)
importFrom(stats,df)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,printCoefmat)
importFrom(stats,quantile)
importFrom(stats,rmultinom)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,terms)
importFrom(stats,update)
importFrom(stats,var)
importFrom(utils,capture.output)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
useDynLib(poppr, .registration = TRUE)